The mycolic acid reductase Rv2509 has distinct structural motifs and is essential for growth in slow‐growing mycobacteria

The final step in mycolic acid biosynthesis in Mycobacterium tuberculosis is catalysed by mycolyl reductase encoded by the Rv2509 gene. Sequence analysis and homology modelling indicate that Rv2509 belongs to the short‐chain fatty acid dehydrogenase/reductase (SDR) family, but with some distinct fea...

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Veröffentlicht in:Molecular microbiology 2020-02, Vol.113 (2), p.521-533
Hauptverfasser: Javid, Asma, Cooper, Charlotte, Singh, Albel, Schindler, Steffen, Hänisch, Milena, Marshall, Robert L., Kalscheuer, Rainer, Bavro, Vassiliy N., Bhatt, Apoorva
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container_end_page 533
container_issue 2
container_start_page 521
container_title Molecular microbiology
container_volume 113
creator Javid, Asma
Cooper, Charlotte
Singh, Albel
Schindler, Steffen
Hänisch, Milena
Marshall, Robert L.
Kalscheuer, Rainer
Bavro, Vassiliy N.
Bhatt, Apoorva
description The final step in mycolic acid biosynthesis in Mycobacterium tuberculosis is catalysed by mycolyl reductase encoded by the Rv2509 gene. Sequence analysis and homology modelling indicate that Rv2509 belongs to the short‐chain fatty acid dehydrogenase/reductase (SDR) family, but with some distinct features that warrant its classification as belonging to a novel family of short‐chain dehydrogenases. In particular, the predicted structure revealed a unique α‐helical C‐terminal region which we demonstrated to be essential for Rv2509 function, though this region did not seem to play any role in protein stabilisation or oligomerisation. We also show that unlike the M. smegmatis homologue which was not essential for growth, Rv2509 was an essential gene in slow‐growing mycobacteria. A knockdown strain of the BCG2529 gene, the Rv2509 homologue in Mycobacterium bovis BCG, was unable to grow following the conditional depletion of BCG2529. This conditional depletion also led to a reduction of mature mycolic acid production and accumulation of intermediates derived from 3‐oxo‐mycolate precursors. Our studies demonstrate novel features of the mycolyl reductase Rv2509 and outline its role in mycobacterial growth, highlighting its potential as a new target for therapies. The Mycobacterium tuberculosis gene Rv2509 encodes a reductase enzyme involved in the last step of synthesis of mycolic acids, a key cell wall lipid. By generating a predicted model for the protein encoded by Rv2509, we show that the enzyme has distinct structural motifs including a distinct C‐terminal region, which we show by complementation studies to be vital for function. The gene is also essential for growth and viability underlining its potential as a new drug target.
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Sequence analysis and homology modelling indicate that Rv2509 belongs to the short‐chain fatty acid dehydrogenase/reductase (SDR) family, but with some distinct features that warrant its classification as belonging to a novel family of short‐chain dehydrogenases. In particular, the predicted structure revealed a unique α‐helical C‐terminal region which we demonstrated to be essential for Rv2509 function, though this region did not seem to play any role in protein stabilisation or oligomerisation. We also show that unlike the M. smegmatis homologue which was not essential for growth, Rv2509 was an essential gene in slow‐growing mycobacteria. A knockdown strain of the BCG2529 gene, the Rv2509 homologue in Mycobacterium bovis BCG, was unable to grow following the conditional depletion of BCG2529. This conditional depletion also led to a reduction of mature mycolic acid production and accumulation of intermediates derived from 3‐oxo‐mycolate precursors. Our studies demonstrate novel features of the mycolyl reductase Rv2509 and outline its role in mycobacterial growth, highlighting its potential as a new target for therapies. The Mycobacterium tuberculosis gene Rv2509 encodes a reductase enzyme involved in the last step of synthesis of mycolic acids, a key cell wall lipid. By generating a predicted model for the protein encoded by Rv2509, we show that the enzyme has distinct structural motifs including a distinct C‐terminal region, which we show by complementation studies to be vital for function. 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Molecular Microbiology published by John Wiley &amp; Sons Ltd</rights><rights>2019 The Authors. 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Sequence analysis and homology modelling indicate that Rv2509 belongs to the short‐chain fatty acid dehydrogenase/reductase (SDR) family, but with some distinct features that warrant its classification as belonging to a novel family of short‐chain dehydrogenases. In particular, the predicted structure revealed a unique α‐helical C‐terminal region which we demonstrated to be essential for Rv2509 function, though this region did not seem to play any role in protein stabilisation or oligomerisation. We also show that unlike the M. smegmatis homologue which was not essential for growth, Rv2509 was an essential gene in slow‐growing mycobacteria. A knockdown strain of the BCG2529 gene, the Rv2509 homologue in Mycobacterium bovis BCG, was unable to grow following the conditional depletion of BCG2529. This conditional depletion also led to a reduction of mature mycolic acid production and accumulation of intermediates derived from 3‐oxo‐mycolate precursors. 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Sequence analysis and homology modelling indicate that Rv2509 belongs to the short‐chain fatty acid dehydrogenase/reductase (SDR) family, but with some distinct features that warrant its classification as belonging to a novel family of short‐chain dehydrogenases. In particular, the predicted structure revealed a unique α‐helical C‐terminal region which we demonstrated to be essential for Rv2509 function, though this region did not seem to play any role in protein stabilisation or oligomerisation. We also show that unlike the M. smegmatis homologue which was not essential for growth, Rv2509 was an essential gene in slow‐growing mycobacteria. A knockdown strain of the BCG2529 gene, the Rv2509 homologue in Mycobacterium bovis BCG, was unable to grow following the conditional depletion of BCG2529. This conditional depletion also led to a reduction of mature mycolic acid production and accumulation of intermediates derived from 3‐oxo‐mycolate precursors. Our studies demonstrate novel features of the mycolyl reductase Rv2509 and outline its role in mycobacterial growth, highlighting its potential as a new target for therapies. The Mycobacterium tuberculosis gene Rv2509 encodes a reductase enzyme involved in the last step of synthesis of mycolic acids, a key cell wall lipid. By generating a predicted model for the protein encoded by Rv2509, we show that the enzyme has distinct structural motifs including a distinct C‐terminal region, which we show by complementation studies to be vital for function. The gene is also essential for growth and viability underlining its potential as a new drug target.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>31785114</pmid><doi>10.1111/mmi.14437</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-6655-1636</orcidid><orcidid>https://orcid.org/0000-0003-2330-8924</orcidid><oa>free_for_read</oa></addata></record>
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subjects Acid production
Bacillus Calmette-Guerin vaccine
Bacterial Proteins - chemistry
Bacterial Proteins - genetics
Bacterial Proteins - metabolism
BCG
Biosynthesis
Cell Wall - metabolism
dehydrogenase
Depletion
Fatty acids
Homology
Intermediates
Models, Molecular
Mycobacterium
Mycobacterium - genetics
Mycobacterium - growth & development
Mycobacterium - metabolism
Mycobacterium bovis - genetics
Mycobacterium bovis - growth & development
Mycobacterium bovis - metabolism
Mycobacterium smegmatis - genetics
Mycobacterium smegmatis - growth & development
Mycobacterium smegmatis - metabolism
Mycobacterium tuberculosis - genetics
Mycobacterium tuberculosis - growth & development
Mycobacterium tuberculosis - metabolism
mycolic acid
Mycolic Acids - metabolism
Oxidoreductases - chemistry
Oxidoreductases - genetics
Oxidoreductases - metabolism
Reductase
Reductases
Sequence analysis
Tuberculosis
title The mycolic acid reductase Rv2509 has distinct structural motifs and is essential for growth in slow‐growing mycobacteria
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