Some Gammaproteobacteria are enriched within CD14+ macrophages from intestinal lamina propria of Crohn’s disease patients versus mucus

Crohn’s disease causes chronic inflammation in the gastrointestinal tract and its pathogenesis remains unclear. In the intestine of Crohn’s disease patients, CD14 + CD11 + CD163 low macrophages contribute to inflammation through the induction of Th17 cells and production of inflammatory cytokines; t...

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Veröffentlicht in:Scientific reports 2020-02, Vol.10 (1), p.2988-2988, Article 2988
Hauptverfasser: Sekido, Yuki, Nishimura, Junichi, Nakano, Kazuhiro, Osu, Takeaki, Chow, Cheryl-Emiliane T., Matsuno, Hiroshi, Ogino, Takayuki, Fujino, Shiki, Miyoshi, Norikatsu, Takahashi, Hidekazu, Uemura, Mamoru, Matsuda, Chu, Kayama, Hisako, Mori, Masaki, Doki, Yuichiro, Takeda, Kiyoshi, Uchino, Motoi, Ikeuchi, Hiroki, Mizushima, Tsunekazu
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container_title Scientific reports
container_volume 10
creator Sekido, Yuki
Nishimura, Junichi
Nakano, Kazuhiro
Osu, Takeaki
Chow, Cheryl-Emiliane T.
Matsuno, Hiroshi
Ogino, Takayuki
Fujino, Shiki
Miyoshi, Norikatsu
Takahashi, Hidekazu
Uemura, Mamoru
Matsuda, Chu
Kayama, Hisako
Mori, Masaki
Doki, Yuichiro
Takeda, Kiyoshi
Uchino, Motoi
Ikeuchi, Hiroki
Mizushima, Tsunekazu
description Crohn’s disease causes chronic inflammation in the gastrointestinal tract and its pathogenesis remains unclear. In the intestine of Crohn’s disease patients, CD14 + CD11 + CD163 low macrophages contribute to inflammation through the induction of Th17 cells and production of inflammatory cytokines; the CD14 + CD11c + 163 high fraction is anti-inflammatory through the production of IL-10 in normal cases. In this report, the 16S rRNA gene amplicon sequencing method was used to identify bacteria that are specifically present in intestinal CD14 + CD11c + macrophages of Crohn’s disease patients. Bacteria present in intestinal CD14 + CD11c + macrophages and mucus of Crohn’s disease patients were separated into different clusters in principal coordinates analysis. There was a statistically significant increase in the relative composition of CD14 + CD11c + macrophages from mucus in two phyla ( Proteobacteria [p = 0.01] and Actinobacteria [p = 0.02]) and two families ( Moraxellaceae [p 
doi_str_mv 10.1038/s41598-020-59937-w
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In the intestine of Crohn’s disease patients, CD14 + CD11 + CD163 low macrophages contribute to inflammation through the induction of Th17 cells and production of inflammatory cytokines; the CD14 + CD11c + 163 high fraction is anti-inflammatory through the production of IL-10 in normal cases. In this report, the 16S rRNA gene amplicon sequencing method was used to identify bacteria that are specifically present in intestinal CD14 + CD11c + macrophages of Crohn’s disease patients. Bacteria present in intestinal CD14 + CD11c + macrophages and mucus of Crohn’s disease patients were separated into different clusters in principal coordinates analysis. There was a statistically significant increase in the relative composition of CD14 + CD11c + macrophages from mucus in two phyla ( Proteobacteria [p = 0.01] and Actinobacteria [p = 0.02]) and two families ( Moraxellaceae [p &lt; 0.001] and Pseudomonadaceae [p = 0.01]). In addition, OTU-1: Acinetobacter and OTU-8: Pseudomonadaceae tended to concentrate in the CD14 + CD11c + CD163 low subset, whereas OTU-10: Proteus , OTU-15: Collinsella tended to concentrate more in the CD14 + CD11c + CD163 high subset than the other subset and mucus.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-020-59937-w</identifier><identifier>PMID: 32076066</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>13/31 ; 38/22 ; 45/23 ; 45/77 ; 631/208/325/1506 ; 631/250/249/2510/1402 ; 631/250/262 ; 631/326/2565/2134 ; 692/4020/1503/257/1402 ; Adult ; Aged ; Bacteria ; CD11c antigen ; CD14 antigen ; Crohn Disease - immunology ; Crohn Disease - microbiology ; Crohn Disease - pathology ; Crohn Disease - surgery ; Crohn's disease ; Cytokines ; DNA, Bacterial - isolation &amp; purification ; Female ; Flow cytometry ; Gammaproteobacteria - genetics ; Gammaproteobacteria - immunology ; Gammaproteobacteria - isolation &amp; purification ; Gastrointestinal tract ; Genetic testing ; Helper cells ; Hospitals ; Humanities and Social Sciences ; Humans ; Ileum - cytology ; Ileum - immunology ; Ileum - microbiology ; Ileum - pathology ; Immunology ; Inflammation ; Inflammatory bowel disease ; Interleukin 10 ; Intestinal Mucosa - cytology ; Intestinal Mucosa - immunology ; Intestinal Mucosa - microbiology ; Intestinal Mucosa - pathology ; Intestine ; Lamina propria ; Lipopolysaccharide Receptors - metabolism ; Lymphocytes T ; Macrophages ; Macrophages - immunology ; Macrophages - metabolism ; Macrophages - microbiology ; Male ; Medicine ; Microbiota ; Middle Aged ; Mucus ; multidisciplinary ; Pseudomonadaceae ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Science ; Science (multidisciplinary) ; Statistical analysis ; Surgery ; Young Adult</subject><ispartof>Scientific reports, 2020-02, Vol.10 (1), p.2988-2988, Article 2988</ispartof><rights>The Author(s) 2020</rights><rights>This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c540t-3b5837cd16f3bd4515ca3255ed3cd595b1549b4bd838e4e12ad2a1d5a1fd69783</citedby><cites>FETCH-LOGICAL-c540t-3b5837cd16f3bd4515ca3255ed3cd595b1549b4bd838e4e12ad2a1d5a1fd69783</cites><orcidid>0000-0002-0825-6823</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031516/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031516/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,41120,42189,51576,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32076066$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sekido, Yuki</creatorcontrib><creatorcontrib>Nishimura, Junichi</creatorcontrib><creatorcontrib>Nakano, Kazuhiro</creatorcontrib><creatorcontrib>Osu, Takeaki</creatorcontrib><creatorcontrib>Chow, Cheryl-Emiliane T.</creatorcontrib><creatorcontrib>Matsuno, Hiroshi</creatorcontrib><creatorcontrib>Ogino, Takayuki</creatorcontrib><creatorcontrib>Fujino, Shiki</creatorcontrib><creatorcontrib>Miyoshi, Norikatsu</creatorcontrib><creatorcontrib>Takahashi, Hidekazu</creatorcontrib><creatorcontrib>Uemura, Mamoru</creatorcontrib><creatorcontrib>Matsuda, Chu</creatorcontrib><creatorcontrib>Kayama, Hisako</creatorcontrib><creatorcontrib>Mori, Masaki</creatorcontrib><creatorcontrib>Doki, Yuichiro</creatorcontrib><creatorcontrib>Takeda, Kiyoshi</creatorcontrib><creatorcontrib>Uchino, Motoi</creatorcontrib><creatorcontrib>Ikeuchi, Hiroki</creatorcontrib><creatorcontrib>Mizushima, Tsunekazu</creatorcontrib><title>Some Gammaproteobacteria are enriched within CD14+ macrophages from intestinal lamina propria of Crohn’s disease patients versus mucus</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Crohn’s disease causes chronic inflammation in the gastrointestinal tract and its pathogenesis remains unclear. In the intestine of Crohn’s disease patients, CD14 + CD11 + CD163 low macrophages contribute to inflammation through the induction of Th17 cells and production of inflammatory cytokines; the CD14 + CD11c + 163 high fraction is anti-inflammatory through the production of IL-10 in normal cases. In this report, the 16S rRNA gene amplicon sequencing method was used to identify bacteria that are specifically present in intestinal CD14 + CD11c + macrophages of Crohn’s disease patients. Bacteria present in intestinal CD14 + CD11c + macrophages and mucus of Crohn’s disease patients were separated into different clusters in principal coordinates analysis. There was a statistically significant increase in the relative composition of CD14 + CD11c + macrophages from mucus in two phyla ( Proteobacteria [p = 0.01] and Actinobacteria [p = 0.02]) and two families ( Moraxellaceae [p &lt; 0.001] and Pseudomonadaceae [p = 0.01]). 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Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sekido, Yuki</au><au>Nishimura, Junichi</au><au>Nakano, Kazuhiro</au><au>Osu, Takeaki</au><au>Chow, Cheryl-Emiliane T.</au><au>Matsuno, Hiroshi</au><au>Ogino, Takayuki</au><au>Fujino, Shiki</au><au>Miyoshi, Norikatsu</au><au>Takahashi, Hidekazu</au><au>Uemura, Mamoru</au><au>Matsuda, Chu</au><au>Kayama, Hisako</au><au>Mori, Masaki</au><au>Doki, Yuichiro</au><au>Takeda, Kiyoshi</au><au>Uchino, Motoi</au><au>Ikeuchi, Hiroki</au><au>Mizushima, Tsunekazu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Some Gammaproteobacteria are enriched within CD14+ macrophages from intestinal lamina propria of Crohn’s disease patients versus mucus</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2020-02-19</date><risdate>2020</risdate><volume>10</volume><issue>1</issue><spage>2988</spage><epage>2988</epage><pages>2988-2988</pages><artnum>2988</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Crohn’s disease causes chronic inflammation in the gastrointestinal tract and its pathogenesis remains unclear. In the intestine of Crohn’s disease patients, CD14 + CD11 + CD163 low macrophages contribute to inflammation through the induction of Th17 cells and production of inflammatory cytokines; the CD14 + CD11c + 163 high fraction is anti-inflammatory through the production of IL-10 in normal cases. In this report, the 16S rRNA gene amplicon sequencing method was used to identify bacteria that are specifically present in intestinal CD14 + CD11c + macrophages of Crohn’s disease patients. Bacteria present in intestinal CD14 + CD11c + macrophages and mucus of Crohn’s disease patients were separated into different clusters in principal coordinates analysis. There was a statistically significant increase in the relative composition of CD14 + CD11c + macrophages from mucus in two phyla ( Proteobacteria [p = 0.01] and Actinobacteria [p = 0.02]) and two families ( Moraxellaceae [p &lt; 0.001] and Pseudomonadaceae [p = 0.01]). In addition, OTU-1: Acinetobacter and OTU-8: Pseudomonadaceae tended to concentrate in the CD14 + CD11c + CD163 low subset, whereas OTU-10: Proteus , OTU-15: Collinsella tended to concentrate more in the CD14 + CD11c + CD163 high subset than the other subset and mucus.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>32076066</pmid><doi>10.1038/s41598-020-59937-w</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-0825-6823</orcidid><oa>free_for_read</oa></addata></record>
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identifier ISSN: 2045-2322
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subjects 13/31
38/22
45/23
45/77
631/208/325/1506
631/250/249/2510/1402
631/250/262
631/326/2565/2134
692/4020/1503/257/1402
Adult
Aged
Bacteria
CD11c antigen
CD14 antigen
Crohn Disease - immunology
Crohn Disease - microbiology
Crohn Disease - pathology
Crohn Disease - surgery
Crohn's disease
Cytokines
DNA, Bacterial - isolation & purification
Female
Flow cytometry
Gammaproteobacteria - genetics
Gammaproteobacteria - immunology
Gammaproteobacteria - isolation & purification
Gastrointestinal tract
Genetic testing
Helper cells
Hospitals
Humanities and Social Sciences
Humans
Ileum - cytology
Ileum - immunology
Ileum - microbiology
Ileum - pathology
Immunology
Inflammation
Inflammatory bowel disease
Interleukin 10
Intestinal Mucosa - cytology
Intestinal Mucosa - immunology
Intestinal Mucosa - microbiology
Intestinal Mucosa - pathology
Intestine
Lamina propria
Lipopolysaccharide Receptors - metabolism
Lymphocytes T
Macrophages
Macrophages - immunology
Macrophages - metabolism
Macrophages - microbiology
Male
Medicine
Microbiota
Middle Aged
Mucus
multidisciplinary
Pseudomonadaceae
RNA, Ribosomal, 16S - genetics
rRNA 16S
Science
Science (multidisciplinary)
Statistical analysis
Surgery
Young Adult
title Some Gammaproteobacteria are enriched within CD14+ macrophages from intestinal lamina propria of Crohn’s disease patients versus mucus
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