Genomic Selection for Optimum Index with Dry Biomass Yield, Dry Mass Fraction of Fresh Material, and Plant Height in Biomass Sorghum
Sorghum is one of the world's major crops, expresses traits for resilience to climate change, and can be used for several purposes including food and clean fuels. Multiple-trait genomic prediction and selection models were implemented using genotyping-by-sequencing single nucleotide polymorphis...
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Veröffentlicht in: | Genes 2020-01, Vol.11 (1), p.61 |
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description | Sorghum is one of the world's major crops, expresses traits for resilience to climate change, and can be used for several purposes including food and clean fuels. Multiple-trait genomic prediction and selection models were implemented using genotyping-by-sequencing single nucleotide polymorphism markers and phenotypic data information. We demonstrated for the first time the efficiency genomic selection modelling of index selection including biofuel traits such as aboveground biomass yield, plant height, and dry mass fraction of the fresh material. This work also sheds light, for the first time, on the promising potential of using the information from the populations grown from seed to predict the performance of the populations regrown from the rhizomes-even two winter seasons after the original trial was sown. Genomic selection modelling of the optimum index selection including the three traits of interest (plant height, aboveground dry biomass yield, and dry mass fraction of fresh mass material) was the most promising. Since the plant characteristics evaluated herein are routinely measured in cereal and other plant species of agricultural interest, it can be inferred that the findings can be transferred in other major crops. |
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Multiple-trait genomic prediction and selection models were implemented using genotyping-by-sequencing single nucleotide polymorphism markers and phenotypic data information. We demonstrated for the first time the efficiency genomic selection modelling of index selection including biofuel traits such as aboveground biomass yield, plant height, and dry mass fraction of the fresh material. This work also sheds light, for the first time, on the promising potential of using the information from the populations grown from seed to predict the performance of the populations regrown from the rhizomes-even two winter seasons after the original trial was sown. Genomic selection modelling of the optimum index selection including the three traits of interest (plant height, aboveground dry biomass yield, and dry mass fraction of fresh mass material) was the most promising. Since the plant characteristics evaluated herein are routinely measured in cereal and other plant species of agricultural interest, it can be inferred that the findings can be transferred in other major crops.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes11010061</identifier><identifier>PMID: 31948110</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Agricultural production ; Algorithms ; Biofuels ; Biomass ; Breeding of animals ; Climate change ; Corn ; Crops ; Efficiency ; Gene polymorphism ; Genomics ; Genotype & phenotype ; Genotyping ; Grain ; Population ; Productivity ; Rhizomes ; Seeds ; Single-nucleotide polymorphism ; Sorghum</subject><ispartof>Genes, 2020-01, Vol.11 (1), p.61</ispartof><rights>2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). 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Since the plant characteristics evaluated herein are routinely measured in cereal and other plant species of agricultural interest, it can be inferred that the findings can be transferred in other major crops.</description><subject>Agricultural production</subject><subject>Algorithms</subject><subject>Biofuels</subject><subject>Biomass</subject><subject>Breeding of animals</subject><subject>Climate change</subject><subject>Corn</subject><subject>Crops</subject><subject>Efficiency</subject><subject>Gene polymorphism</subject><subject>Genomics</subject><subject>Genotype & phenotype</subject><subject>Genotyping</subject><subject>Grain</subject><subject>Population</subject><subject>Productivity</subject><subject>Rhizomes</subject><subject>Seeds</subject><subject>Single-nucleotide polymorphism</subject><subject>Sorghum</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNpdkTtvFTEQhS0EIlFISYss0VBkwc99NEgQyEMKClKgoLJ87fFdR7v2xfYC6fnhONxwleDGM-Nvjnx0EHpOyWvOB_JmDQEypYQS0tJHaJ-RjjdCMPn4Xr2HDnO-JvUIwgiRT9Eep4Po694--n0KIc7e4CuYwBQfA3Yx4ctN8fMy4_Ng4Rf-6cuIP6Qb_N7HWeeMv3mY7NHf0afb_iTp7W50tYY81nGB5PV0hHWw-POkQ8Fn4NdjwT7sdK5iWo_L_Aw9cXrKcHh3H6CvJx-_HJ81F5en58fvLhojqCwN6xmzBJxjxNGV1RrcYGo7AHScS9ZyKrRsSTVmBdjOrIgeXN8aZoRlbsUP0Nut7mZZzWANhJL0pDbJzzrdqKi9evgS_KjW8YfqCO2olFXg1Z1Ait8XyEXNPhuYqj2IS1aMC9ryVsiuoi__Q6_jkkK1p5gUvaSSkb5SzZYyKeacwO0-Q4m6jVg9iLjyL-472NH_AuV_ALieo4Y</recordid><startdate>20200105</startdate><enddate>20200105</enddate><creator>Habyarimana, Ephrem</creator><creator>Lopez-Cruz, Marco</creator><creator>Baloch, Faheem S</creator><general>MDPI AG</general><general>MDPI</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-2731-2744</orcidid><orcidid>https://orcid.org/0000-0002-7470-0080</orcidid></search><sort><creationdate>20200105</creationdate><title>Genomic Selection for Optimum Index with Dry Biomass Yield, Dry Mass Fraction of Fresh Material, and Plant Height in Biomass Sorghum</title><author>Habyarimana, Ephrem ; 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subjects | Agricultural production Algorithms Biofuels Biomass Breeding of animals Climate change Corn Crops Efficiency Gene polymorphism Genomics Genotype & phenotype Genotyping Grain Population Productivity Rhizomes Seeds Single-nucleotide polymorphism Sorghum |
title | Genomic Selection for Optimum Index with Dry Biomass Yield, Dry Mass Fraction of Fresh Material, and Plant Height in Biomass Sorghum |
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