Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

ABSTRACT Background Sugarcane cultivars are polyploid interspecific hybrids of giant genomes, typically with 10–13 sets of chromosomes from 2 Saccharum species. The ploidy, hybridity, and size of the genome, estimated to have >10 Gb, pose a challenge for sequencing. Results Here we present a gene...

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Veröffentlicht in:	Gigascience 2019-12, Vol.8 (12)
Hauptverfasser:	Souza, Glaucia Mendes, Van Sluys, Marie-Anne, Lembke, Carolina Gimiliani, Lee, Hayan, Margarido, Gabriel Rodrigues Alves, Hotta, Carlos Takeshi, Gaiarsa, Jonas Weissmann, Diniz, Augusto Lima, Oliveira, Mauro de Medeiros, Ferreira, Sávio de Siqueira, Nishiyama, Milton Yutaka, ten-Caten, Felipe, Ragagnin, Geovani Tolfo, Andrade, Pablo de Morais, de Souza, Robson Francisco, Nicastro, Gianlucca Gonçalves, Pandya, Ravi, Kim, Changsoo, Guo, Hui, Durham, Alan Mitchell, Carneiro, Monalisa Sampaio, Zhang, Jisen, Zhang, Xingtan, Zhang, Qing, Ming, Ray, Schatz, Michael C, Davidson, Bob, Paterson, Andrew H, Heckerman, David
Format:	Artikel
Sprache:	eng
Schlagworte:	Ammonia Assembly Biomass Contig Mapping - methods Crops, Agricultural - genetics Crops, Agricultural - growth & development Cultivars Diploids Divergence Gene families Genes Genetic Variation Genome Size Genome, Plant Genomes Glucosyltransferases - genetics Hybrids Multigene Family Nucleotides Phenylalanine Phenylalanine ammonia-lyase Phenylalanine Ammonia-Lyase - genetics Plant Proteins - genetics Ploidy Polyploidy Promoter Regions, Genetic Regulatory sequences Saccharum Saccharum - genetics Saccharum - growth & development Saccharum spontaneum Sorghum Sucrose Sucrose synthase Sugarcane Synthesis
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