Linkage mapping of quantitative trait loci for fiber yield and its related traits in the population derived from cultivated ramie and wild B. nivea var. tenacissima
Ramie is an important natural fiber crop, and the fiber yield and its related traits are the most valuable traits in ramie production. However, the genetic basis for these traits is still poorly understood, which has dramatically hindered the breeding of high yield in this fiber crop. Herein, a high...
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| description | Ramie is an important natural fiber crop, and the fiber yield and its related traits are the most valuable traits in ramie production. However, the genetic basis for these traits is still poorly understood, which has dramatically hindered the breeding of high yield in this fiber crop. Herein, a high-density genetic map with 6,433 markers spanning 2476.5 cM was constructed using a population derived from two parents, cultivated ramie Zhongsizhu 1 (ZSZ1) and its wild progenitor
B. nivea
var.
tenacissima
(BNT). The fiber yield (FY) and its four related traits—stem diameter (SD) and length (SL), stem bark weight (BW) and thickness (BT)—were performed for quantitative trait locus (QTL) analysis, resulting in a total of 47 QTLs identified. Forty QTLs were mapped into 12 genomic regions, thus forming 12 QTL clusters. Among 47 QTLs, there were 14 QTLs whose wild allele from BNT was beneficial. Interestingly, all QTLs in Cluster 10 displayed overdominance, indicating that the region of this cluster was likely heterotic loci. In addition, four fiber yield-related genes underwent positive selection were found either to fall into the FY-related QTL regions or to be near to the identified QTLs. The dissection of FY and FY-related traits not only improved our understanding to the genetic basis of these traits, but also provided new insights into the domestication of FY in ramie. The identification of many QTLs and the discovery of beneficial alleles from wild species provided a basis for the improvement of yield traits in ramie breeding. |
| doi_str_mv | 10.1038/s41598-019-53399-5 |
| format | Article |
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B. nivea
var.
tenacissima
(BNT). The fiber yield (FY) and its four related traits—stem diameter (SD) and length (SL), stem bark weight (BW) and thickness (BT)—were performed for quantitative trait locus (QTL) analysis, resulting in a total of 47 QTLs identified. Forty QTLs were mapped into 12 genomic regions, thus forming 12 QTL clusters. Among 47 QTLs, there were 14 QTLs whose wild allele from BNT was beneficial. Interestingly, all QTLs in Cluster 10 displayed overdominance, indicating that the region of this cluster was likely heterotic loci. In addition, four fiber yield-related genes underwent positive selection were found either to fall into the FY-related QTL regions or to be near to the identified QTLs. The dissection of FY and FY-related traits not only improved our understanding to the genetic basis of these traits, but also provided new insights into the domestication of FY in ramie. The identification of many QTLs and the discovery of beneficial alleles from wild species provided a basis for the improvement of yield traits in ramie breeding.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-019-53399-5</identifier><identifier>PMID: 31728008</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/208/207 ; 631/208/480 ; Agricultural production ; Alleles ; Bark ; Boehmeria - anatomy & histology ; Boehmeria - chemistry ; Boehmeria - genetics ; Boehmeria - growth & development ; Breeding ; Chromosome Mapping - statistics & numerical data ; Crops, Agricultural ; Crosses, Genetic ; Dietary Fiber - analysis ; Domestication ; Gene mapping ; Genetic Linkage ; Genome, Plant ; Humanities and Social Sciences ; Humans ; multidisciplinary ; Plant Breeding - methods ; Plant Stems - anatomy & histology ; Plant Stems - chemistry ; Plant Stems - genetics ; Plant Stems - growth & development ; Positive selection ; Quantitative Trait Loci ; Quantitative Trait, Heritable ; Science ; Science (multidisciplinary)</subject><ispartof>Scientific reports, 2019-11, Vol.9 (1), p.16855-9, Article 16855</ispartof><rights>The Author(s) 2019</rights><rights>2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c474t-ed3ad68163f26d1eb7dbdf9ccd1bac47a317516cb90802faa2cd083bdd2c20f43</citedby><cites>FETCH-LOGICAL-c474t-ed3ad68163f26d1eb7dbdf9ccd1bac47a317516cb90802faa2cd083bdd2c20f43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856109/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856109/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31728008$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zeng, Zheng</creatorcontrib><creatorcontrib>Wang, Yanzhou</creatorcontrib><creatorcontrib>Liu, Chan</creatorcontrib><creatorcontrib>Yang, Xiufeng</creatorcontrib><creatorcontrib>Wang, Hengyun</creatorcontrib><creatorcontrib>Li, Fu</creatorcontrib><creatorcontrib>Liu, Touming</creatorcontrib><title>Linkage mapping of quantitative trait loci for fiber yield and its related traits in the population derived from cultivated ramie and wild B. nivea var. tenacissima</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Ramie is an important natural fiber crop, and the fiber yield and its related traits are the most valuable traits in ramie production. However, the genetic basis for these traits is still poorly understood, which has dramatically hindered the breeding of high yield in this fiber crop. Herein, a high-density genetic map with 6,433 markers spanning 2476.5 cM was constructed using a population derived from two parents, cultivated ramie Zhongsizhu 1 (ZSZ1) and its wild progenitor
B. nivea
var.
tenacissima
(BNT). The fiber yield (FY) and its four related traits—stem diameter (SD) and length (SL), stem bark weight (BW) and thickness (BT)—were performed for quantitative trait locus (QTL) analysis, resulting in a total of 47 QTLs identified. Forty QTLs were mapped into 12 genomic regions, thus forming 12 QTL clusters. Among 47 QTLs, there were 14 QTLs whose wild allele from BNT was beneficial. Interestingly, all QTLs in Cluster 10 displayed overdominance, indicating that the region of this cluster was likely heterotic loci. In addition, four fiber yield-related genes underwent positive selection were found either to fall into the FY-related QTL regions or to be near to the identified QTLs. The dissection of FY and FY-related traits not only improved our understanding to the genetic basis of these traits, but also provided new insights into the domestication of FY in ramie. The identification of many QTLs and the discovery of beneficial alleles from wild species provided a basis for the improvement of yield traits in ramie breeding.</description><subject>631/208/207</subject><subject>631/208/480</subject><subject>Agricultural production</subject><subject>Alleles</subject><subject>Bark</subject><subject>Boehmeria - anatomy & histology</subject><subject>Boehmeria - chemistry</subject><subject>Boehmeria - genetics</subject><subject>Boehmeria - growth & development</subject><subject>Breeding</subject><subject>Chromosome Mapping - statistics & numerical data</subject><subject>Crops, Agricultural</subject><subject>Crosses, Genetic</subject><subject>Dietary Fiber - analysis</subject><subject>Domestication</subject><subject>Gene mapping</subject><subject>Genetic Linkage</subject><subject>Genome, Plant</subject><subject>Humanities and Social Sciences</subject><subject>Humans</subject><subject>multidisciplinary</subject><subject>Plant Breeding - methods</subject><subject>Plant Stems - 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anatomy & histology</topic><topic>Boehmeria - chemistry</topic><topic>Boehmeria - genetics</topic><topic>Boehmeria - growth & development</topic><topic>Breeding</topic><topic>Chromosome Mapping - statistics & numerical data</topic><topic>Crops, Agricultural</topic><topic>Crosses, Genetic</topic><topic>Dietary Fiber - analysis</topic><topic>Domestication</topic><topic>Gene mapping</topic><topic>Genetic Linkage</topic><topic>Genome, Plant</topic><topic>Humanities and Social Sciences</topic><topic>Humans</topic><topic>multidisciplinary</topic><topic>Plant Breeding - methods</topic><topic>Plant Stems - anatomy & histology</topic><topic>Plant Stems - chemistry</topic><topic>Plant Stems - genetics</topic><topic>Plant Stems - growth & development</topic><topic>Positive selection</topic><topic>Quantitative Trait Loci</topic><topic>Quantitative Trait, Heritable</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zeng, Zheng</creatorcontrib><creatorcontrib>Wang, Yanzhou</creatorcontrib><creatorcontrib>Liu, Chan</creatorcontrib><creatorcontrib>Yang, Xiufeng</creatorcontrib><creatorcontrib>Wang, Hengyun</creatorcontrib><creatorcontrib>Li, Fu</creatorcontrib><creatorcontrib>Liu, Touming</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zeng, Zheng</au><au>Wang, Yanzhou</au><au>Liu, Chan</au><au>Yang, Xiufeng</au><au>Wang, Hengyun</au><au>Li, Fu</au><au>Liu, Touming</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Linkage mapping of quantitative trait loci for fiber yield and its related traits in the population derived from cultivated ramie and wild B. nivea var. tenacissima</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2019-11-14</date><risdate>2019</risdate><volume>9</volume><issue>1</issue><spage>16855</spage><epage>9</epage><pages>16855-9</pages><artnum>16855</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Ramie is an important natural fiber crop, and the fiber yield and its related traits are the most valuable traits in ramie production. However, the genetic basis for these traits is still poorly understood, which has dramatically hindered the breeding of high yield in this fiber crop. Herein, a high-density genetic map with 6,433 markers spanning 2476.5 cM was constructed using a population derived from two parents, cultivated ramie Zhongsizhu 1 (ZSZ1) and its wild progenitor
B. nivea
var.
tenacissima
(BNT). The fiber yield (FY) and its four related traits—stem diameter (SD) and length (SL), stem bark weight (BW) and thickness (BT)—were performed for quantitative trait locus (QTL) analysis, resulting in a total of 47 QTLs identified. Forty QTLs were mapped into 12 genomic regions, thus forming 12 QTL clusters. Among 47 QTLs, there were 14 QTLs whose wild allele from BNT was beneficial. Interestingly, all QTLs in Cluster 10 displayed overdominance, indicating that the region of this cluster was likely heterotic loci. In addition, four fiber yield-related genes underwent positive selection were found either to fall into the FY-related QTL regions or to be near to the identified QTLs. The dissection of FY and FY-related traits not only improved our understanding to the genetic basis of these traits, but also provided new insights into the domestication of FY in ramie. The identification of many QTLs and the discovery of beneficial alleles from wild species provided a basis for the improvement of yield traits in ramie breeding.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>31728008</pmid><doi>10.1038/s41598-019-53399-5</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | 631/208/207 631/208/480 Agricultural production Alleles Bark Boehmeria - anatomy & histology Boehmeria - chemistry Boehmeria - genetics Boehmeria - growth & development Breeding Chromosome Mapping - statistics & numerical data Crops, Agricultural Crosses, Genetic Dietary Fiber - analysis Domestication Gene mapping Genetic Linkage Genome, Plant Humanities and Social Sciences Humans multidisciplinary Plant Breeding - methods Plant Stems - anatomy & histology Plant Stems - chemistry Plant Stems - genetics Plant Stems - growth & development Positive selection Quantitative Trait Loci Quantitative Trait, Heritable Science Science (multidisciplinary) |
| title | Linkage mapping of quantitative trait loci for fiber yield and its related traits in the population derived from cultivated ramie and wild B. nivea var. tenacissima |
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