Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations
Background X‐ray repair cross‐complementing group 3 (XRCC3) plays a crucial role in mammalian DNA repair processes. The polymorphism of XRCC3, rs861539 (Thr > Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide poly...
Gespeichert in:
Veröffentlicht in: | Journal of clinical laboratory analysis 2014-03, Vol.28 (2), p.118-123 |
---|---|
Hauptverfasser: | , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 123 |
---|---|
container_issue | 2 |
container_start_page | 118 |
container_title | Journal of clinical laboratory analysis |
container_volume | 28 |
creator | Chen, Yng-Tay Chen, Shih-Yin Lin, Ying-Ju Huang, Chung-Ming Chang, Yuan-Yen Tsai, Fuu-Jen |
description | Background
X‐ray repair cross‐complementing group 3 (XRCC3) plays a crucial role in mammalian DNA repair processes. The polymorphism of XRCC3, rs861539 (Thr > Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide polymorphism and systemic lupus erythematosus (SLE) in the Han Chinese population in Taiwan (HC‐TW).
Methods
Genotyping was performed using polymerase chain reaction restriction fragment length polymorphism on 163 SLE patients and 191 healthy participants in the control group.
Results
The data showed that the genotype frequency at codon 241 did not differ significantly between the SLE patients and the healthy participants in the control group; however, the allele frequency analysis indicated a significant difference between these groups. In addition, we used the genotype and allele frequencies of 191 healthy HC‐TW participants for comparison with HapMap populations. The results indicated a significant difference of XRCC3 Thr241Met allele and genotype frequencies between the HC‐TW population and HapMap populations, except for the other Han Chinese populations. A prior study showed that Thr241 > Met substitution in XRCC3 protein was positive as damaging and functional consequences as well.
Conclusion
This is the first study to demonstrate the difference of XRCC3 Thr241 > Met variant between the HC‐TW population and HapMap population. |
doi_str_mv | 10.1002/jcla.21654 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_6807594</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3248189601</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4154-82f8367de08576c1a762fbb9044fd47e1ad00ba4112609aec49107bf4ac4654f3</originalsourceid><addsrcrecordid>eNpVkc2O0zAUhS0EYsrAhgdAltiSwU78lw1SGw1ToAyFFg1iY90kDnVJnRInlLwIz4snHSpY-eee891rH4SeUnJBCYlfbosaLmIqOLuHJpSkKopVzO-jCVFKRorQ5Aw98n5LCFEpFQ_RWcySlAtOJ-j31PumsNDZxuGZ6Q7GOPzlU5YleL1pY0bfmw6vrpcYXIlXg-_MzhZ40e97jy_boduYHXSNDyfr8BwczjbWGW_wMiCN68b7NdgDuBcjA3AgQjR1UA_eetxUeG6g7jYDXjb7vh4n8Y_Rgwpqb57crefo8-vLdTaPFh-u3mTTRVQwylmk4kolQpaGKC5FQUGKuMrzlDBWlUwaCiUhOTBKY0FSMAVLKZF5xaBg4buq5By9OnL3fb4zZREmbqHW-9buoB10A1b_X3F2o781P7VQRPKUBcDzO0Db_OiN7_S26dvwOK8pJ1IlUioZVM_-bXPi_80hCOhRcLC1GU51SvRtwvo2YT0mrN9mi-m4C57o6LEhlV8nD7TftZCJ5Prm-krz2cfV7N3XGy2SP_ZtqRQ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1507837787</pqid></control><display><type>article</type><title>Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations</title><source>MEDLINE</source><source>Access via Wiley Online Library</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Chen, Yng-Tay ; Chen, Shih-Yin ; Lin, Ying-Ju ; Huang, Chung-Ming ; Chang, Yuan-Yen ; Tsai, Fuu-Jen</creator><creatorcontrib>Chen, Yng-Tay ; Chen, Shih-Yin ; Lin, Ying-Ju ; Huang, Chung-Ming ; Chang, Yuan-Yen ; Tsai, Fuu-Jen</creatorcontrib><description>Background
X‐ray repair cross‐complementing group 3 (XRCC3) plays a crucial role in mammalian DNA repair processes. The polymorphism of XRCC3, rs861539 (Thr > Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide polymorphism and systemic lupus erythematosus (SLE) in the Han Chinese population in Taiwan (HC‐TW).
Methods
Genotyping was performed using polymerase chain reaction restriction fragment length polymorphism on 163 SLE patients and 191 healthy participants in the control group.
Results
The data showed that the genotype frequency at codon 241 did not differ significantly between the SLE patients and the healthy participants in the control group; however, the allele frequency analysis indicated a significant difference between these groups. In addition, we used the genotype and allele frequencies of 191 healthy HC‐TW participants for comparison with HapMap populations. The results indicated a significant difference of XRCC3 Thr241Met allele and genotype frequencies between the HC‐TW population and HapMap populations, except for the other Han Chinese populations. A prior study showed that Thr241 > Met substitution in XRCC3 protein was positive as damaging and functional consequences as well.
Conclusion
This is the first study to demonstrate the difference of XRCC3 Thr241 > Met variant between the HC‐TW population and HapMap population.</description><identifier>ISSN: 0887-8013</identifier><identifier>EISSN: 1098-2825</identifier><identifier>DOI: 10.1002/jcla.21654</identifier><identifier>PMID: 24395651</identifier><language>eng</language><publisher>United States: Blackwell Publishing Ltd</publisher><subject>Alleles ; Amino Acid Substitution - genetics ; Asian Continental Ancestry Group - genetics ; Autoimmune diseases ; Case-Control Studies ; DNA-Binding Proteins - genetics ; Ethnic Groups - genetics ; Gene Frequency - genetics ; Genetic Association Studies ; Genetic Predisposition to Disease ; genotype ; Genotype & phenotype ; haplotype ; Haplotypes - genetics ; Humans ; Lupus ; Meta-analysis ; Original ; Polymerase Chain Reaction ; Polymorphism ; Polymorphism, Restriction Fragment Length ; Polymorphism, Single Nucleotide - genetics ; Population genetics ; single nucleotide polymorphisms (SNPs) ; systemic lupus erythematosus (SLE) ; Taiwan ; X-ray repair cross-complementing group 3 (XRCC3)</subject><ispartof>Journal of clinical laboratory analysis, 2014-03, Vol.28 (2), p.118-123</ispartof><rights>2014 Wiley Periodicals, Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4154-82f8367de08576c1a762fbb9044fd47e1ad00ba4112609aec49107bf4ac4654f3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6807594/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6807594/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,1417,27924,27925,45574,45575,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24395651$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chen, Yng-Tay</creatorcontrib><creatorcontrib>Chen, Shih-Yin</creatorcontrib><creatorcontrib>Lin, Ying-Ju</creatorcontrib><creatorcontrib>Huang, Chung-Ming</creatorcontrib><creatorcontrib>Chang, Yuan-Yen</creatorcontrib><creatorcontrib>Tsai, Fuu-Jen</creatorcontrib><title>Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations</title><title>Journal of clinical laboratory analysis</title><addtitle>J. Clin. Lab. Anal</addtitle><description>Background
X‐ray repair cross‐complementing group 3 (XRCC3) plays a crucial role in mammalian DNA repair processes. The polymorphism of XRCC3, rs861539 (Thr > Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide polymorphism and systemic lupus erythematosus (SLE) in the Han Chinese population in Taiwan (HC‐TW).
Methods
Genotyping was performed using polymerase chain reaction restriction fragment length polymorphism on 163 SLE patients and 191 healthy participants in the control group.
Results
The data showed that the genotype frequency at codon 241 did not differ significantly between the SLE patients and the healthy participants in the control group; however, the allele frequency analysis indicated a significant difference between these groups. In addition, we used the genotype and allele frequencies of 191 healthy HC‐TW participants for comparison with HapMap populations. The results indicated a significant difference of XRCC3 Thr241Met allele and genotype frequencies between the HC‐TW population and HapMap populations, except for the other Han Chinese populations. A prior study showed that Thr241 > Met substitution in XRCC3 protein was positive as damaging and functional consequences as well.
Conclusion
This is the first study to demonstrate the difference of XRCC3 Thr241 > Met variant between the HC‐TW population and HapMap population.</description><subject>Alleles</subject><subject>Amino Acid Substitution - genetics</subject><subject>Asian Continental Ancestry Group - genetics</subject><subject>Autoimmune diseases</subject><subject>Case-Control Studies</subject><subject>DNA-Binding Proteins - genetics</subject><subject>Ethnic Groups - genetics</subject><subject>Gene Frequency - genetics</subject><subject>Genetic Association Studies</subject><subject>Genetic Predisposition to Disease</subject><subject>genotype</subject><subject>Genotype & phenotype</subject><subject>haplotype</subject><subject>Haplotypes - genetics</subject><subject>Humans</subject><subject>Lupus</subject><subject>Meta-analysis</subject><subject>Original</subject><subject>Polymerase Chain Reaction</subject><subject>Polymorphism</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>Polymorphism, Single Nucleotide - genetics</subject><subject>Population genetics</subject><subject>single nucleotide polymorphisms (SNPs)</subject><subject>systemic lupus erythematosus (SLE)</subject><subject>Taiwan</subject><subject>X-ray repair cross-complementing group 3 (XRCC3)</subject><issn>0887-8013</issn><issn>1098-2825</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkc2O0zAUhS0EYsrAhgdAltiSwU78lw1SGw1ToAyFFg1iY90kDnVJnRInlLwIz4snHSpY-eee891rH4SeUnJBCYlfbosaLmIqOLuHJpSkKopVzO-jCVFKRorQ5Aw98n5LCFEpFQ_RWcySlAtOJ-j31PumsNDZxuGZ6Q7GOPzlU5YleL1pY0bfmw6vrpcYXIlXg-_MzhZ40e97jy_boduYHXSNDyfr8BwczjbWGW_wMiCN68b7NdgDuBcjA3AgQjR1UA_eetxUeG6g7jYDXjb7vh4n8Y_Rgwpqb57crefo8-vLdTaPFh-u3mTTRVQwylmk4kolQpaGKC5FQUGKuMrzlDBWlUwaCiUhOTBKY0FSMAVLKZF5xaBg4buq5By9OnL3fb4zZREmbqHW-9buoB10A1b_X3F2o781P7VQRPKUBcDzO0Db_OiN7_S26dvwOK8pJ1IlUioZVM_-bXPi_80hCOhRcLC1GU51SvRtwvo2YT0mrN9mi-m4C57o6LEhlV8nD7TftZCJ5Prm-krz2cfV7N3XGy2SP_ZtqRQ</recordid><startdate>201403</startdate><enddate>201403</enddate><creator>Chen, Yng-Tay</creator><creator>Chen, Shih-Yin</creator><creator>Lin, Ying-Ju</creator><creator>Huang, Chung-Ming</creator><creator>Chang, Yuan-Yen</creator><creator>Tsai, Fuu-Jen</creator><general>Blackwell Publishing Ltd</general><general>John Wiley & Sons, Inc</general><general>John Wiley and Sons Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7QP</scope><scope>7T5</scope><scope>7U9</scope><scope>H94</scope><scope>K9.</scope><scope>5PM</scope></search><sort><creationdate>201403</creationdate><title>Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations</title><author>Chen, Yng-Tay ; Chen, Shih-Yin ; Lin, Ying-Ju ; Huang, Chung-Ming ; Chang, Yuan-Yen ; Tsai, Fuu-Jen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4154-82f8367de08576c1a762fbb9044fd47e1ad00ba4112609aec49107bf4ac4654f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Alleles</topic><topic>Amino Acid Substitution - genetics</topic><topic>Asian Continental Ancestry Group - genetics</topic><topic>Autoimmune diseases</topic><topic>Case-Control Studies</topic><topic>DNA-Binding Proteins - genetics</topic><topic>Ethnic Groups - genetics</topic><topic>Gene Frequency - genetics</topic><topic>Genetic Association Studies</topic><topic>Genetic Predisposition to Disease</topic><topic>genotype</topic><topic>Genotype & phenotype</topic><topic>haplotype</topic><topic>Haplotypes - genetics</topic><topic>Humans</topic><topic>Lupus</topic><topic>Meta-analysis</topic><topic>Original</topic><topic>Polymerase Chain Reaction</topic><topic>Polymorphism</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>Polymorphism, Single Nucleotide - genetics</topic><topic>Population genetics</topic><topic>single nucleotide polymorphisms (SNPs)</topic><topic>systemic lupus erythematosus (SLE)</topic><topic>Taiwan</topic><topic>X-ray repair cross-complementing group 3 (XRCC3)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Yng-Tay</creatorcontrib><creatorcontrib>Chen, Shih-Yin</creatorcontrib><creatorcontrib>Lin, Ying-Ju</creatorcontrib><creatorcontrib>Huang, Chung-Ming</creatorcontrib><creatorcontrib>Chang, Yuan-Yen</creatorcontrib><creatorcontrib>Tsai, Fuu-Jen</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Immunology Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of clinical laboratory analysis</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Yng-Tay</au><au>Chen, Shih-Yin</au><au>Lin, Ying-Ju</au><au>Huang, Chung-Ming</au><au>Chang, Yuan-Yen</au><au>Tsai, Fuu-Jen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations</atitle><jtitle>Journal of clinical laboratory analysis</jtitle><addtitle>J. Clin. Lab. Anal</addtitle><date>2014-03</date><risdate>2014</risdate><volume>28</volume><issue>2</issue><spage>118</spage><epage>123</epage><pages>118-123</pages><issn>0887-8013</issn><eissn>1098-2825</eissn><abstract>Background
X‐ray repair cross‐complementing group 3 (XRCC3) plays a crucial role in mammalian DNA repair processes. The polymorphism of XRCC3, rs861539 (Thr > Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide polymorphism and systemic lupus erythematosus (SLE) in the Han Chinese population in Taiwan (HC‐TW).
Methods
Genotyping was performed using polymerase chain reaction restriction fragment length polymorphism on 163 SLE patients and 191 healthy participants in the control group.
Results
The data showed that the genotype frequency at codon 241 did not differ significantly between the SLE patients and the healthy participants in the control group; however, the allele frequency analysis indicated a significant difference between these groups. In addition, we used the genotype and allele frequencies of 191 healthy HC‐TW participants for comparison with HapMap populations. The results indicated a significant difference of XRCC3 Thr241Met allele and genotype frequencies between the HC‐TW population and HapMap populations, except for the other Han Chinese populations. A prior study showed that Thr241 > Met substitution in XRCC3 protein was positive as damaging and functional consequences as well.
Conclusion
This is the first study to demonstrate the difference of XRCC3 Thr241 > Met variant between the HC‐TW population and HapMap population.</abstract><cop>United States</cop><pub>Blackwell Publishing Ltd</pub><pmid>24395651</pmid><doi>10.1002/jcla.21654</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0887-8013 |
ispartof | Journal of clinical laboratory analysis, 2014-03, Vol.28 (2), p.118-123 |
issn | 0887-8013 1098-2825 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_6807594 |
source | MEDLINE; Access via Wiley Online Library; EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Alleles Amino Acid Substitution - genetics Asian Continental Ancestry Group - genetics Autoimmune diseases Case-Control Studies DNA-Binding Proteins - genetics Ethnic Groups - genetics Gene Frequency - genetics Genetic Association Studies Genetic Predisposition to Disease genotype Genotype & phenotype haplotype Haplotypes - genetics Humans Lupus Meta-analysis Original Polymerase Chain Reaction Polymorphism Polymorphism, Restriction Fragment Length Polymorphism, Single Nucleotide - genetics Population genetics single nucleotide polymorphisms (SNPs) systemic lupus erythematosus (SLE) Taiwan X-ray repair cross-complementing group 3 (XRCC3) |
title | Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-26T17%3A47%3A16IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Association%20Between%20XRCC3%20Thr241Met%20SNP%20and%20Systemic%20Lupus%20Erythematosus%20in%20Han%20Chinese%20Patients%20in%20Taiwan,%20and%20a%20Meta-Analysis%20of%20Healthy%20Populations&rft.jtitle=Journal%20of%20clinical%20laboratory%20analysis&rft.au=Chen,%20Yng-Tay&rft.date=2014-03&rft.volume=28&rft.issue=2&rft.spage=118&rft.epage=123&rft.pages=118-123&rft.issn=0887-8013&rft.eissn=1098-2825&rft_id=info:doi/10.1002/jcla.21654&rft_dat=%3Cproquest_pubme%3E3248189601%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1507837787&rft_id=info:pmid/24395651&rfr_iscdi=true |