Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations

Background X‐ray repair cross‐complementing group 3 (XRCC3) plays a crucial role in mammalian DNA repair processes. The polymorphism of XRCC3, rs861539 (Thr > Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide poly...

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Veröffentlicht in:Journal of clinical laboratory analysis 2014-03, Vol.28 (2), p.118-123
Hauptverfasser: Chen, Yng-Tay, Chen, Shih-Yin, Lin, Ying-Ju, Huang, Chung-Ming, Chang, Yuan-Yen, Tsai, Fuu-Jen
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container_issue 2
container_start_page 118
container_title Journal of clinical laboratory analysis
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creator Chen, Yng-Tay
Chen, Shih-Yin
Lin, Ying-Ju
Huang, Chung-Ming
Chang, Yuan-Yen
Tsai, Fuu-Jen
description Background X‐ray repair cross‐complementing group 3 (XRCC3) plays a crucial role in mammalian DNA repair processes. The polymorphism of XRCC3, rs861539 (Thr > Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide polymorphism and systemic lupus erythematosus (SLE) in the Han Chinese population in Taiwan (HC‐TW). Methods Genotyping was performed using polymerase chain reaction restriction fragment length polymorphism on 163 SLE patients and 191 healthy participants in the control group. Results The data showed that the genotype frequency at codon 241 did not differ significantly between the SLE patients and the healthy participants in the control group; however, the allele frequency analysis indicated a significant difference between these groups. In addition, we used the genotype and allele frequencies of 191 healthy HC‐TW participants for comparison with HapMap populations. The results indicated a significant difference of XRCC3 Thr241Met allele and genotype frequencies between the HC‐TW population and HapMap populations, except for the other Han Chinese populations. A prior study showed that Thr241 > Met substitution in XRCC3 protein was positive as damaging and functional consequences as well. Conclusion This is the first study to demonstrate the difference of XRCC3 Thr241 > Met variant between the HC‐TW population and HapMap population.
doi_str_mv 10.1002/jcla.21654
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The polymorphism of XRCC3, rs861539 (Thr &gt; Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide polymorphism and systemic lupus erythematosus (SLE) in the Han Chinese population in Taiwan (HC‐TW). Methods Genotyping was performed using polymerase chain reaction restriction fragment length polymorphism on 163 SLE patients and 191 healthy participants in the control group. Results The data showed that the genotype frequency at codon 241 did not differ significantly between the SLE patients and the healthy participants in the control group; however, the allele frequency analysis indicated a significant difference between these groups. In addition, we used the genotype and allele frequencies of 191 healthy HC‐TW participants for comparison with HapMap populations. The results indicated a significant difference of XRCC3 Thr241Met allele and genotype frequencies between the HC‐TW population and HapMap populations, except for the other Han Chinese populations. A prior study showed that Thr241 &gt; Met substitution in XRCC3 protein was positive as damaging and functional consequences as well. Conclusion This is the first study to demonstrate the difference of XRCC3 Thr241 &gt; Met variant between the HC‐TW population and HapMap population.</description><identifier>ISSN: 0887-8013</identifier><identifier>EISSN: 1098-2825</identifier><identifier>DOI: 10.1002/jcla.21654</identifier><identifier>PMID: 24395651</identifier><language>eng</language><publisher>United States: Blackwell Publishing Ltd</publisher><subject>Alleles ; Amino Acid Substitution - genetics ; Asian Continental Ancestry Group - genetics ; Autoimmune diseases ; Case-Control Studies ; DNA-Binding Proteins - genetics ; Ethnic Groups - genetics ; Gene Frequency - genetics ; Genetic Association Studies ; Genetic Predisposition to Disease ; genotype ; Genotype &amp; phenotype ; haplotype ; Haplotypes - genetics ; Humans ; Lupus ; Meta-analysis ; Original ; Polymerase Chain Reaction ; Polymorphism ; Polymorphism, Restriction Fragment Length ; Polymorphism, Single Nucleotide - genetics ; Population genetics ; single nucleotide polymorphisms (SNPs) ; systemic lupus erythematosus (SLE) ; Taiwan ; X-ray repair cross-complementing group 3 (XRCC3)</subject><ispartof>Journal of clinical laboratory analysis, 2014-03, Vol.28 (2), p.118-123</ispartof><rights>2014 Wiley Periodicals, Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4154-82f8367de08576c1a762fbb9044fd47e1ad00ba4112609aec49107bf4ac4654f3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6807594/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6807594/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,1417,27924,27925,45574,45575,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24395651$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chen, Yng-Tay</creatorcontrib><creatorcontrib>Chen, Shih-Yin</creatorcontrib><creatorcontrib>Lin, Ying-Ju</creatorcontrib><creatorcontrib>Huang, Chung-Ming</creatorcontrib><creatorcontrib>Chang, Yuan-Yen</creatorcontrib><creatorcontrib>Tsai, Fuu-Jen</creatorcontrib><title>Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations</title><title>Journal of clinical laboratory analysis</title><addtitle>J. Clin. Lab. Anal</addtitle><description>Background X‐ray repair cross‐complementing group 3 (XRCC3) plays a crucial role in mammalian DNA repair processes. The polymorphism of XRCC3, rs861539 (Thr &gt; Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide polymorphism and systemic lupus erythematosus (SLE) in the Han Chinese population in Taiwan (HC‐TW). Methods Genotyping was performed using polymerase chain reaction restriction fragment length polymorphism on 163 SLE patients and 191 healthy participants in the control group. Results The data showed that the genotype frequency at codon 241 did not differ significantly between the SLE patients and the healthy participants in the control group; however, the allele frequency analysis indicated a significant difference between these groups. In addition, we used the genotype and allele frequencies of 191 healthy HC‐TW participants for comparison with HapMap populations. The results indicated a significant difference of XRCC3 Thr241Met allele and genotype frequencies between the HC‐TW population and HapMap populations, except for the other Han Chinese populations. A prior study showed that Thr241 &gt; Met substitution in XRCC3 protein was positive as damaging and functional consequences as well. Conclusion This is the first study to demonstrate the difference of XRCC3 Thr241 &gt; Met variant between the HC‐TW population and HapMap population.</description><subject>Alleles</subject><subject>Amino Acid Substitution - genetics</subject><subject>Asian Continental Ancestry Group - genetics</subject><subject>Autoimmune diseases</subject><subject>Case-Control Studies</subject><subject>DNA-Binding Proteins - genetics</subject><subject>Ethnic Groups - genetics</subject><subject>Gene Frequency - genetics</subject><subject>Genetic Association Studies</subject><subject>Genetic Predisposition to Disease</subject><subject>genotype</subject><subject>Genotype &amp; phenotype</subject><subject>haplotype</subject><subject>Haplotypes - genetics</subject><subject>Humans</subject><subject>Lupus</subject><subject>Meta-analysis</subject><subject>Original</subject><subject>Polymerase Chain Reaction</subject><subject>Polymorphism</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>Polymorphism, Single Nucleotide - genetics</subject><subject>Population genetics</subject><subject>single nucleotide polymorphisms (SNPs)</subject><subject>systemic lupus erythematosus (SLE)</subject><subject>Taiwan</subject><subject>X-ray repair cross-complementing group 3 (XRCC3)</subject><issn>0887-8013</issn><issn>1098-2825</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkc2O0zAUhS0EYsrAhgdAltiSwU78lw1SGw1ToAyFFg1iY90kDnVJnRInlLwIz4snHSpY-eee891rH4SeUnJBCYlfbosaLmIqOLuHJpSkKopVzO-jCVFKRorQ5Aw98n5LCFEpFQ_RWcySlAtOJ-j31PumsNDZxuGZ6Q7GOPzlU5YleL1pY0bfmw6vrpcYXIlXg-_MzhZ40e97jy_boduYHXSNDyfr8BwczjbWGW_wMiCN68b7NdgDuBcjA3AgQjR1UA_eetxUeG6g7jYDXjb7vh4n8Y_Rgwpqb57crefo8-vLdTaPFh-u3mTTRVQwylmk4kolQpaGKC5FQUGKuMrzlDBWlUwaCiUhOTBKY0FSMAVLKZF5xaBg4buq5By9OnL3fb4zZREmbqHW-9buoB10A1b_X3F2o781P7VQRPKUBcDzO0Db_OiN7_S26dvwOK8pJ1IlUioZVM_-bXPi_80hCOhRcLC1GU51SvRtwvo2YT0mrN9mi-m4C57o6LEhlV8nD7TftZCJ5Prm-krz2cfV7N3XGy2SP_ZtqRQ</recordid><startdate>201403</startdate><enddate>201403</enddate><creator>Chen, Yng-Tay</creator><creator>Chen, Shih-Yin</creator><creator>Lin, Ying-Ju</creator><creator>Huang, Chung-Ming</creator><creator>Chang, Yuan-Yen</creator><creator>Tsai, Fuu-Jen</creator><general>Blackwell Publishing Ltd</general><general>John Wiley &amp; Sons, Inc</general><general>John Wiley and Sons Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7QP</scope><scope>7T5</scope><scope>7U9</scope><scope>H94</scope><scope>K9.</scope><scope>5PM</scope></search><sort><creationdate>201403</creationdate><title>Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations</title><author>Chen, Yng-Tay ; Chen, Shih-Yin ; Lin, Ying-Ju ; Huang, Chung-Ming ; Chang, Yuan-Yen ; Tsai, Fuu-Jen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4154-82f8367de08576c1a762fbb9044fd47e1ad00ba4112609aec49107bf4ac4654f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Alleles</topic><topic>Amino Acid Substitution - genetics</topic><topic>Asian Continental Ancestry Group - genetics</topic><topic>Autoimmune diseases</topic><topic>Case-Control Studies</topic><topic>DNA-Binding Proteins - genetics</topic><topic>Ethnic Groups - genetics</topic><topic>Gene Frequency - genetics</topic><topic>Genetic Association Studies</topic><topic>Genetic Predisposition to Disease</topic><topic>genotype</topic><topic>Genotype &amp; phenotype</topic><topic>haplotype</topic><topic>Haplotypes - genetics</topic><topic>Humans</topic><topic>Lupus</topic><topic>Meta-analysis</topic><topic>Original</topic><topic>Polymerase Chain Reaction</topic><topic>Polymorphism</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>Polymorphism, Single Nucleotide - genetics</topic><topic>Population genetics</topic><topic>single nucleotide polymorphisms (SNPs)</topic><topic>systemic lupus erythematosus (SLE)</topic><topic>Taiwan</topic><topic>X-ray repair cross-complementing group 3 (XRCC3)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Yng-Tay</creatorcontrib><creatorcontrib>Chen, Shih-Yin</creatorcontrib><creatorcontrib>Lin, Ying-Ju</creatorcontrib><creatorcontrib>Huang, Chung-Ming</creatorcontrib><creatorcontrib>Chang, Yuan-Yen</creatorcontrib><creatorcontrib>Tsai, Fuu-Jen</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Calcium &amp; Calcified Tissue Abstracts</collection><collection>Immunology Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of clinical laboratory analysis</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Yng-Tay</au><au>Chen, Shih-Yin</au><au>Lin, Ying-Ju</au><au>Huang, Chung-Ming</au><au>Chang, Yuan-Yen</au><au>Tsai, Fuu-Jen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations</atitle><jtitle>Journal of clinical laboratory analysis</jtitle><addtitle>J. Clin. Lab. Anal</addtitle><date>2014-03</date><risdate>2014</risdate><volume>28</volume><issue>2</issue><spage>118</spage><epage>123</epage><pages>118-123</pages><issn>0887-8013</issn><eissn>1098-2825</eissn><abstract>Background X‐ray repair cross‐complementing group 3 (XRCC3) plays a crucial role in mammalian DNA repair processes. The polymorphism of XRCC3, rs861539 (Thr &gt; Met at codon 241), is common in populations worldwide. This study analyzed the relationship between this functional single nucleotide polymorphism and systemic lupus erythematosus (SLE) in the Han Chinese population in Taiwan (HC‐TW). Methods Genotyping was performed using polymerase chain reaction restriction fragment length polymorphism on 163 SLE patients and 191 healthy participants in the control group. Results The data showed that the genotype frequency at codon 241 did not differ significantly between the SLE patients and the healthy participants in the control group; however, the allele frequency analysis indicated a significant difference between these groups. In addition, we used the genotype and allele frequencies of 191 healthy HC‐TW participants for comparison with HapMap populations. The results indicated a significant difference of XRCC3 Thr241Met allele and genotype frequencies between the HC‐TW population and HapMap populations, except for the other Han Chinese populations. A prior study showed that Thr241 &gt; Met substitution in XRCC3 protein was positive as damaging and functional consequences as well. Conclusion This is the first study to demonstrate the difference of XRCC3 Thr241 &gt; Met variant between the HC‐TW population and HapMap population.</abstract><cop>United States</cop><pub>Blackwell Publishing Ltd</pub><pmid>24395651</pmid><doi>10.1002/jcla.21654</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record>
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subjects Alleles
Amino Acid Substitution - genetics
Asian Continental Ancestry Group - genetics
Autoimmune diseases
Case-Control Studies
DNA-Binding Proteins - genetics
Ethnic Groups - genetics
Gene Frequency - genetics
Genetic Association Studies
Genetic Predisposition to Disease
genotype
Genotype & phenotype
haplotype
Haplotypes - genetics
Humans
Lupus
Meta-analysis
Original
Polymerase Chain Reaction
Polymorphism
Polymorphism, Restriction Fragment Length
Polymorphism, Single Nucleotide - genetics
Population genetics
single nucleotide polymorphisms (SNPs)
systemic lupus erythematosus (SLE)
Taiwan
X-ray repair cross-complementing group 3 (XRCC3)
title Association Between XRCC3 Thr241Met SNP and Systemic Lupus Erythematosus in Han Chinese Patients in Taiwan, and a Meta-Analysis of Healthy Populations
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