Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer

Cellular diversity in tumors is a key factor for therapeutic failures and lethal outcomes of solid malignancies. Here, we determined the single-cell transcriptomic landscape of liver cancer biospecimens from 19 patients. We found varying degrees of heterogeneity in malignant cells within and between...

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Veröffentlicht in:Cancer cell 2019-10, Vol.36 (4), p.418-430.e6
Hauptverfasser: Ma, Lichun, Hernandez, Maria O., Zhao, Yongmei, Mehta, Monika, Tran, Bao, Kelly, Michael, Rae, Zachary, Hernandez, Jonathan M., Davis, Jeremy L., Martin, Sean P., Kleiner, David E., Hewitt, Stephen M., Ylaya, Kris, Wood, Bradford J., Greten, Tim F., Wang, Xin Wei
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container_end_page 430.e6
container_issue 4
container_start_page 418
container_title Cancer cell
container_volume 36
creator Ma, Lichun
Hernandez, Maria O.
Zhao, Yongmei
Mehta, Monika
Tran, Bao
Kelly, Michael
Rae, Zachary
Hernandez, Jonathan M.
Davis, Jeremy L.
Martin, Sean P.
Kleiner, David E.
Hewitt, Stephen M.
Ylaya, Kris
Wood, Bradford J.
Greten, Tim F.
Wang, Xin Wei
description Cellular diversity in tumors is a key factor for therapeutic failures and lethal outcomes of solid malignancies. Here, we determined the single-cell transcriptomic landscape of liver cancer biospecimens from 19 patients. We found varying degrees of heterogeneity in malignant cells within and between tumors and diverse landscapes of tumor microenvironment (TME). Strikingly, tumors with higher transcriptomic diversity were associated with patient's worse overall survival. We found a link between hypoxia-dependent vascular endothelial growth factor expression in tumor diversity and TME polarization. Moreover, T cells from higher heterogeneous tumors showed lower cytolytic activities. Consistent results were found using bulk genomic and transcriptomic profiles of 765 liver tumors. Our results offer insight into the diverse ecosystem of liver cancer and its impact on patient prognosis. [Display omitted] •HCC and iCCA have a varying degree of transcriptomic diversity•Tumor transcriptomic diversity is associated with patient outcomes•Tumor-derived VEGF drives microenvironmental reprogramming•T cells derived from higher heterogeneous tumors showed lower cytolytic activities Ma et al. perform single-cell RNA sequencing of primary liver cancers and find heterogeneity in malignant cells and in the tumor microenvironment, the degree of which negatively associates with patient prognosis. They demonstrate that VEGF expression is linked to tumor diversity and T cell dysfunction.
doi_str_mv 10.1016/j.ccell.2019.08.007
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Here, we determined the single-cell transcriptomic landscape of liver cancer biospecimens from 19 patients. We found varying degrees of heterogeneity in malignant cells within and between tumors and diverse landscapes of tumor microenvironment (TME). Strikingly, tumors with higher transcriptomic diversity were associated with patient's worse overall survival. We found a link between hypoxia-dependent vascular endothelial growth factor expression in tumor diversity and TME polarization. Moreover, T cells from higher heterogeneous tumors showed lower cytolytic activities. Consistent results were found using bulk genomic and transcriptomic profiles of 765 liver tumors. Our results offer insight into the diverse ecosystem of liver cancer and its impact on patient prognosis. 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Here, we determined the single-cell transcriptomic landscape of liver cancer biospecimens from 19 patients. We found varying degrees of heterogeneity in malignant cells within and between tumors and diverse landscapes of tumor microenvironment (TME). Strikingly, tumors with higher transcriptomic diversity were associated with patient's worse overall survival. We found a link between hypoxia-dependent vascular endothelial growth factor expression in tumor diversity and TME polarization. Moreover, T cells from higher heterogeneous tumors showed lower cytolytic activities. Consistent results were found using bulk genomic and transcriptomic profiles of 765 liver tumors. Our results offer insight into the diverse ecosystem of liver cancer and its impact on patient prognosis. 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Here, we determined the single-cell transcriptomic landscape of liver cancer biospecimens from 19 patients. We found varying degrees of heterogeneity in malignant cells within and between tumors and diverse landscapes of tumor microenvironment (TME). Strikingly, tumors with higher transcriptomic diversity were associated with patient's worse overall survival. We found a link between hypoxia-dependent vascular endothelial growth factor expression in tumor diversity and TME polarization. Moreover, T cells from higher heterogeneous tumors showed lower cytolytic activities. Consistent results were found using bulk genomic and transcriptomic profiles of 765 liver tumors. Our results offer insight into the diverse ecosystem of liver cancer and its impact on patient prognosis. [Display omitted] •HCC and iCCA have a varying degree of transcriptomic diversity•Tumor transcriptomic diversity is associated with patient outcomes•Tumor-derived VEGF drives microenvironmental reprogramming•T cells derived from higher heterogeneous tumors showed lower cytolytic activities Ma et al. perform single-cell RNA sequencing of primary liver cancers and find heterogeneity in malignant cells and in the tumor microenvironment, the degree of which negatively associates with patient prognosis. They demonstrate that VEGF expression is linked to tumor diversity and T cell dysfunction.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>31588021</pmid><doi>10.1016/j.ccell.2019.08.007</doi><oa>free_for_read</oa></addata></record>
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subjects Adult
Aged
Aged, 80 and over
Antineoplastic Agents, Immunological - pharmacology
Antineoplastic Agents, Immunological - therapeutic use
Bile Duct Neoplasms - genetics
Bile Duct Neoplasms - mortality
Bile Duct Neoplasms - pathology
Bile Duct Neoplasms - therapy
Bile Ducts, Intrahepatic - pathology
Bile Ducts, Intrahepatic - surgery
biodiversity
Biopsy
Carcinoma, Hepatocellular - genetics
Carcinoma, Hepatocellular - mortality
Carcinoma, Hepatocellular - pathology
Carcinoma, Hepatocellular - therapy
cholangiocarcinoma
Cholangiocarcinoma - genetics
Cholangiocarcinoma - mortality
Cholangiocarcinoma - pathology
Cholangiocarcinoma - therapy
DNA Copy Number Variations
Drug Resistance, Neoplasm - genetics
Female
Gene Expression Regulation, Neoplastic
Genetic Variation
Hepatectomy
hepatocellular carcinoma
Humans
Liver - pathology
Liver - surgery
liver cancer
Liver Neoplasms - genetics
Liver Neoplasms - mortality
Liver Neoplasms - pathology
Liver Neoplasms - therapy
Male
microenvironmental reprogramming
Middle Aged
Prognosis
Progression-Free Survival
RNA-Seq
single-cell
Single-Cell Analysis
tumor ecosystem
tumor heterogeneity
Tumor Microenvironment - drug effects
Tumor Microenvironment - genetics
tumor microenvironments
Vascular Endothelial Growth Factor A - genetics
Vascular Endothelial Growth Factor A - metabolism
VEGF
title Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer
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