Identification of Indian Spiders through DNA barcoding: Cryptic species and species complex

Spiders are mega diverse arthropods and play an important role in the ecosystem. Identification of this group is challenging due to their cryptic behavior, sexual dimorphism, and unavailability of taxonomic keys for juveniles. To overcome these obstacles, DNA barcoding plays a pivotal role in spider...

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Veröffentlicht in:Scientific reports 2019-10, Vol.9 (1), p.14033-13, Article 14033
Hauptverfasser: Tyagi, Kaomud, Kumar, Vikas, Kundu, Shantanu, Pakrashi, Avas, Prasad, Priya, Caleb, John T. D., Chandra, Kailash
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container_issue 1
container_start_page 14033
container_title Scientific reports
container_volume 9
creator Tyagi, Kaomud
Kumar, Vikas
Kundu, Shantanu
Pakrashi, Avas
Prasad, Priya
Caleb, John T. D.
Chandra, Kailash
description Spiders are mega diverse arthropods and play an important role in the ecosystem. Identification of this group is challenging due to their cryptic behavior, sexual dimorphism, and unavailability of taxonomic keys for juveniles. To overcome these obstacles, DNA barcoding plays a pivotal role in spider identification throughout the globe. This study is the first large scale attempt on DNA barcoding of spiders from India with 101 morphospecies of 72 genera under 21 families, including five endemic species and holotypes of three species. A total of 489 barcodes was generated and analyzed, among them 85 novel barcodes of 22 morphospecies were contributed to the global database. The estimated delimitation threshold of the Indian spiders was 2.6% to 3.7% K2P corrected pairwise distance. The multiple species delimitation methods (BIN, ABGD, GMYC and PTP) revealed a total of 107 molecular operational taxonomic units (MOTUs) for 101 morphospecies. We detected more than one MOTU in 11 morphospecies with discrepancies in genetic distances and tree topologies. Cryptic diversity was detected in Pardosa pusiola , Cyclosa spirifera , and Heteropoda venatoria . The intraspecies distances which were as large as our proposed delimitation threshold were observed in Pardosa sumatrana , Thiania bhamoensis , and Cheiracanthium triviale . Further, shallow genetic distances were detected in Cyrtophora cicatrosa , Hersilia savignyi , Argiope versicolor , Phintella vittata , and Oxyopes birmanicus . Two morphologically distinguished species ( Plexippus paykulli and Plexippus petersi ) showed intra-individual variation within their DNA barcode data. Additionally, we reinstate the original combination for Linyphia sikkimensis based on both morphology and DNA barcoding. These data show that DNA barcoding is a valuable tool for specimen identification and species discovery of Indian spiders.
doi_str_mv 10.1038/s41598-019-50510-8
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This study is the first large scale attempt on DNA barcoding of spiders from India with 101 morphospecies of 72 genera under 21 families, including five endemic species and holotypes of three species. A total of 489 barcodes was generated and analyzed, among them 85 novel barcodes of 22 morphospecies were contributed to the global database. The estimated delimitation threshold of the Indian spiders was 2.6% to 3.7% K2P corrected pairwise distance. The multiple species delimitation methods (BIN, ABGD, GMYC and PTP) revealed a total of 107 molecular operational taxonomic units (MOTUs) for 101 morphospecies. We detected more than one MOTU in 11 morphospecies with discrepancies in genetic distances and tree topologies. Cryptic diversity was detected in Pardosa pusiola , Cyclosa spirifera , and Heteropoda venatoria . The intraspecies distances which were as large as our proposed delimitation threshold were observed in Pardosa sumatrana , Thiania bhamoensis , and Cheiracanthium triviale . 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subjects 14
45/22
45/23
45/29
631/181/2480
631/601/1466
Animals
Araneae
Classification
Cryptic species
Deoxyribonucleic acid
DNA
DNA - genetics
DNA Barcoding, Taxonomic - methods
Endemic species
Female
Genera
Genetic distance
Haplotypes
Holotypes
Humanities and Social Sciences
Identification
India
Male
multidisciplinary
Phylogeny
Polymerase Chain Reaction
Science
Science (multidisciplinary)
Sexual behavior
Sexual dimorphism
Spiders
Spiders - anatomy & histology
Spiders - classification
Spiders - genetics
Taxonomy
title Identification of Indian Spiders through DNA barcoding: Cryptic species and species complex
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