Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine
DNA double-strand breaks (DSBs) resulting from reactive oxygen species generated by exposure to UV and ionizing radiation are characterized by clusters of lesions near break sites. Such complex DSBs are repaired slowly, and their persistence can have severe consequences for human health. We have the...
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Veröffentlicht in: | Nucleic acids research 2019-09, Vol.47 (17), p.9410-9422 |
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creator | Kaminski, Andrea M Chiruvella, Kishore K Ramsden, Dale A Kunkel, Thomas A Bebenek, Katarzyna Pedersen, Lars C |
description | DNA double-strand breaks (DSBs) resulting from reactive oxygen species generated by exposure to UV and ionizing radiation are characterized by clusters of lesions near break sites. Such complex DSBs are repaired slowly, and their persistence can have severe consequences for human health. We have therefore probed DNA break repair containing a template 8-oxo-7,8-dihydro-2'-guanosine (8OG) by Family X Polymerase μ (Pol μ) in steady-state kinetics and cell-based assays. Pol μ tolerates 8OG-containing template DNA substrates, and the filled products can be subsequently ligated by DNA Ligase IV during Nonhomologous end-joining. Furthermore, Pol μ exhibits a strong preference for mutagenic bypass of 8OG by insertion of adenine. Crystal structures reveal that the template 8OG is accommodated in the Pol μ active site with none of the DNA substrate distortions observed for Family X siblings Pols β or λ. Kinetic characterization of template 8OG bypass indicates that Pol μ inserts adenosine nucleotides with weak sugar selectivity and, given the high cellular concentration of ATP, likely performs its role in repair of complex 8OG-containing DSBs using ribonucleotides. |
doi_str_mv | 10.1093/nar/gkz680 |
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Such complex DSBs are repaired slowly, and their persistence can have severe consequences for human health. We have therefore probed DNA break repair containing a template 8-oxo-7,8-dihydro-2'-guanosine (8OG) by Family X Polymerase μ (Pol μ) in steady-state kinetics and cell-based assays. Pol μ tolerates 8OG-containing template DNA substrates, and the filled products can be subsequently ligated by DNA Ligase IV during Nonhomologous end-joining. Furthermore, Pol μ exhibits a strong preference for mutagenic bypass of 8OG by insertion of adenine. Crystal structures reveal that the template 8OG is accommodated in the Pol μ active site with none of the DNA substrate distortions observed for Family X siblings Pols β or λ. Kinetic characterization of template 8OG bypass indicates that Pol μ inserts adenosine nucleotides with weak sugar selectivity and, given the high cellular concentration of ATP, likely performs its role in repair of complex 8OG-containing DSBs using ribonucleotides.</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gkz680</identifier><identifier>PMID: 31435651</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Adenosine Triphosphate - genetics ; DNA Breaks, Double-Stranded - radiation effects ; DNA Damage - genetics ; DNA Damage - radiation effects ; DNA End-Joining Repair - genetics ; DNA End-Joining Repair - radiation effects ; DNA Ligase ATP - genetics ; DNA Replication - genetics ; DNA-Directed DNA Polymerase - chemistry ; DNA-Directed DNA Polymerase - genetics ; Guanosine - analogs & derivatives ; Guanosine - genetics ; Humans ; Mutagenesis - radiation effects ; Radiation, Ionizing ; Reactive Oxygen Species - chemistry ; Structural Biology ; Ultraviolet Rays</subject><ispartof>Nucleic acids research, 2019-09, Vol.47 (17), p.9410-9422</ispartof><rights>Published by Oxford University Press on behalf of Nucleic Acids Research 2019.</rights><rights>Published by Oxford University Press on behalf of Nucleic Acids Research 2019. 2019</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c444t-cdc7afbc69cbd1c1d187285a9cf52d2f6f50f971a6d98b96ee00fa4fd1483a273</citedby><cites>FETCH-LOGICAL-c444t-cdc7afbc69cbd1c1d187285a9cf52d2f6f50f971a6d98b96ee00fa4fd1483a273</cites><orcidid>0000-0002-3263-7992 ; 0000-0002-6263-4186 ; 0000-0002-4488-4077</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6755092/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6755092/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31435651$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kaminski, Andrea M</creatorcontrib><creatorcontrib>Chiruvella, Kishore K</creatorcontrib><creatorcontrib>Ramsden, Dale A</creatorcontrib><creatorcontrib>Kunkel, Thomas A</creatorcontrib><creatorcontrib>Bebenek, Katarzyna</creatorcontrib><creatorcontrib>Pedersen, Lars C</creatorcontrib><title>Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine</title><title>Nucleic acids research</title><addtitle>Nucleic Acids Res</addtitle><description>DNA double-strand breaks (DSBs) resulting from reactive oxygen species generated by exposure to UV and ionizing radiation are characterized by clusters of lesions near break sites. Such complex DSBs are repaired slowly, and their persistence can have severe consequences for human health. We have therefore probed DNA break repair containing a template 8-oxo-7,8-dihydro-2'-guanosine (8OG) by Family X Polymerase μ (Pol μ) in steady-state kinetics and cell-based assays. Pol μ tolerates 8OG-containing template DNA substrates, and the filled products can be subsequently ligated by DNA Ligase IV during Nonhomologous end-joining. Furthermore, Pol μ exhibits a strong preference for mutagenic bypass of 8OG by insertion of adenine. Crystal structures reveal that the template 8OG is accommodated in the Pol μ active site with none of the DNA substrate distortions observed for Family X siblings Pols β or λ. Kinetic characterization of template 8OG bypass indicates that Pol μ inserts adenosine nucleotides with weak sugar selectivity and, given the high cellular concentration of ATP, likely performs its role in repair of complex 8OG-containing DSBs using ribonucleotides.</description><subject>Adenosine Triphosphate - genetics</subject><subject>DNA Breaks, Double-Stranded - radiation effects</subject><subject>DNA Damage - genetics</subject><subject>DNA Damage - radiation effects</subject><subject>DNA End-Joining Repair - genetics</subject><subject>DNA End-Joining Repair - radiation effects</subject><subject>DNA Ligase ATP - genetics</subject><subject>DNA Replication - genetics</subject><subject>DNA-Directed DNA Polymerase - chemistry</subject><subject>DNA-Directed DNA Polymerase - genetics</subject><subject>Guanosine - analogs & derivatives</subject><subject>Guanosine - genetics</subject><subject>Humans</subject><subject>Mutagenesis - radiation effects</subject><subject>Radiation, Ionizing</subject><subject>Reactive Oxygen Species - chemistry</subject><subject>Structural Biology</subject><subject>Ultraviolet Rays</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkMtKw0AUhgdRbK1ufADJThDHzj2ZjVDqFapu7MLVMJlLG00zYZKW1qc3Ui26OgfO9_8HPgBOMbrCSNJhpeNw9vEpMrQH-pgKApkUZB_0EUUcYsSyHjhqmneEMMOcHYIexYxywXEfvE0rt66daZ1NcjfXqyLEJPjk5nmU1KHcLFzUjUuelkmo69AUrUtat6hL3S0ZDOsA08sM2mK-sTFAcg5nS111XOWOwYHXZeNOfuYATO9uX8cPcPJy_zgeTaBhjLXQWJNqnxshTW6xwRZnKcm4lsZzYokXniMvU6yFlVkuhXMIec28xSyjmqR0AK63vfUyXzhrXNVGXao6FgsdNyroQv2_VMVczcJKiZRzJElXcLEtMDE0TXR-l8VIfQtWnWC1FdzBZ3-_7dBfo_QL6W151w</recordid><startdate>20190926</startdate><enddate>20190926</enddate><creator>Kaminski, Andrea M</creator><creator>Chiruvella, Kishore K</creator><creator>Ramsden, Dale A</creator><creator>Kunkel, Thomas A</creator><creator>Bebenek, Katarzyna</creator><creator>Pedersen, Lars C</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-3263-7992</orcidid><orcidid>https://orcid.org/0000-0002-6263-4186</orcidid><orcidid>https://orcid.org/0000-0002-4488-4077</orcidid></search><sort><creationdate>20190926</creationdate><title>Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine</title><author>Kaminski, Andrea M ; Chiruvella, Kishore K ; Ramsden, Dale A ; Kunkel, Thomas A ; Bebenek, Katarzyna ; Pedersen, Lars C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c444t-cdc7afbc69cbd1c1d187285a9cf52d2f6f50f971a6d98b96ee00fa4fd1483a273</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Adenosine Triphosphate - genetics</topic><topic>DNA Breaks, Double-Stranded - radiation effects</topic><topic>DNA Damage - genetics</topic><topic>DNA Damage - radiation effects</topic><topic>DNA End-Joining Repair - genetics</topic><topic>DNA End-Joining Repair - radiation effects</topic><topic>DNA Ligase ATP - genetics</topic><topic>DNA Replication - genetics</topic><topic>DNA-Directed DNA Polymerase - chemistry</topic><topic>DNA-Directed DNA Polymerase - genetics</topic><topic>Guanosine - analogs & derivatives</topic><topic>Guanosine - genetics</topic><topic>Humans</topic><topic>Mutagenesis - radiation effects</topic><topic>Radiation, Ionizing</topic><topic>Reactive Oxygen Species - chemistry</topic><topic>Structural Biology</topic><topic>Ultraviolet Rays</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kaminski, Andrea M</creatorcontrib><creatorcontrib>Chiruvella, Kishore K</creatorcontrib><creatorcontrib>Ramsden, Dale A</creatorcontrib><creatorcontrib>Kunkel, Thomas A</creatorcontrib><creatorcontrib>Bebenek, Katarzyna</creatorcontrib><creatorcontrib>Pedersen, Lars C</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kaminski, Andrea M</au><au>Chiruvella, Kishore K</au><au>Ramsden, Dale A</au><au>Kunkel, Thomas A</au><au>Bebenek, Katarzyna</au><au>Pedersen, Lars C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2019-09-26</date><risdate>2019</risdate><volume>47</volume><issue>17</issue><spage>9410</spage><epage>9422</epage><pages>9410-9422</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><abstract>DNA double-strand breaks (DSBs) resulting from reactive oxygen species generated by exposure to UV and ionizing radiation are characterized by clusters of lesions near break sites. Such complex DSBs are repaired slowly, and their persistence can have severe consequences for human health. We have therefore probed DNA break repair containing a template 8-oxo-7,8-dihydro-2'-guanosine (8OG) by Family X Polymerase μ (Pol μ) in steady-state kinetics and cell-based assays. Pol μ tolerates 8OG-containing template DNA substrates, and the filled products can be subsequently ligated by DNA Ligase IV during Nonhomologous end-joining. Furthermore, Pol μ exhibits a strong preference for mutagenic bypass of 8OG by insertion of adenine. Crystal structures reveal that the template 8OG is accommodated in the Pol μ active site with none of the DNA substrate distortions observed for Family X siblings Pols β or λ. Kinetic characterization of template 8OG bypass indicates that Pol μ inserts adenosine nucleotides with weak sugar selectivity and, given the high cellular concentration of ATP, likely performs its role in repair of complex 8OG-containing DSBs using ribonucleotides.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>31435651</pmid><doi>10.1093/nar/gkz680</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-3263-7992</orcidid><orcidid>https://orcid.org/0000-0002-6263-4186</orcidid><orcidid>https://orcid.org/0000-0002-4488-4077</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adenosine Triphosphate - genetics DNA Breaks, Double-Stranded - radiation effects DNA Damage - genetics DNA Damage - radiation effects DNA End-Joining Repair - genetics DNA End-Joining Repair - radiation effects DNA Ligase ATP - genetics DNA Replication - genetics DNA-Directed DNA Polymerase - chemistry DNA-Directed DNA Polymerase - genetics Guanosine - analogs & derivatives Guanosine - genetics Humans Mutagenesis - radiation effects Radiation, Ionizing Reactive Oxygen Species - chemistry Structural Biology Ultraviolet Rays |
title | Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine |
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