Next-generation sequencing predicts interaction network between miRNA and target genes in lipoteichoic acid-stimulated human neutrophils

Toll‑like receptors (TLRs), which are a class of pattern‑recognition receptors, can sense specific molecules of pathogens and then activate immune cells, such as neutrophils. The regulation of TLR signaling in immune cells has been investigated by various studies. However, the interaction of TLR sig...

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Veröffentlicht in:International journal of molecular medicine 2019-10, Vol.44 (4), p.1436-1446
Hauptverfasser: Yen, Meng-Chi, Yeh, I-Jeng, Liu, Kuan-Ting, Jian, Shu-Fang, Lin, Chia-Jung, Tsai, Ming-Ju, Kuo, Po-Lin
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container_issue 4
container_start_page 1436
container_title International journal of molecular medicine
container_volume 44
creator Yen, Meng-Chi
Yeh, I-Jeng
Liu, Kuan-Ting
Jian, Shu-Fang
Lin, Chia-Jung
Tsai, Ming-Ju
Kuo, Po-Lin
description Toll‑like receptors (TLRs), which are a class of pattern‑recognition receptors, can sense specific molecules of pathogens and then activate immune cells, such as neutrophils. The regulation of TLR signaling in immune cells has been investigated by various studies. However, the interaction of TLR signaling‑activated microRNAs (miRNAs) and genes has not been well investigated in a specific type of immune cells. In the present study, neutrophils were isolated from peripheral blood of a healthy donor, and then treated for 16 h with Staphylococcus aureus lipoteichoic acid (LTA), which is an agonist of TLR2. The miRNA and mRNA expression profiles were analyzed via next‑generation sequencing and bioinformatics approaches. A total of 290 differentially expressed genes between LTA‑treated and vehicle‑treated neutrophils were identified. Gene ontology analysis revealed that various biological processes and pathways, including inflammatory responses, defense response, positive regulation of cell migration, motility, and locomotion, and cell surface receptor signaling pathway, were significantly enriched. In addition, 38 differentially expressed miRNAs were identified and predicted to be involved in regulating signal transduction and cell communication. The interaction of 4 miRNAs (hsa‑miR‑34a‑5p, hsa‑miR‑34c‑5p, hsa‑miR‑708‑5p, and hsa‑miR‑1271‑5p) and 5 genes (MET, CACNB3, TNS3, TTYH3, and HBEGF) was proposed to participate in the LTA‑induced signaling network. The present findings may provide novel information for understanding the detailed expression profiles and potential networks between miRNAs and their target genes in LTA‑stimulated healthy neutrophils.
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The regulation of TLR signaling in immune cells has been investigated by various studies. However, the interaction of TLR signaling‑activated microRNAs (miRNAs) and genes has not been well investigated in a specific type of immune cells. In the present study, neutrophils were isolated from peripheral blood of a healthy donor, and then treated for 16 h with Staphylococcus aureus lipoteichoic acid (LTA), which is an agonist of TLR2. The miRNA and mRNA expression profiles were analyzed via next‑generation sequencing and bioinformatics approaches. A total of 290 differentially expressed genes between LTA‑treated and vehicle‑treated neutrophils were identified. Gene ontology analysis revealed that various biological processes and pathways, including inflammatory responses, defense response, positive regulation of cell migration, motility, and locomotion, and cell surface receptor signaling pathway, were significantly enriched. In addition, 38 differentially expressed miRNAs were identified and predicted to be involved in regulating signal transduction and cell communication. The interaction of 4 miRNAs (hsa‑miR‑34a‑5p, hsa‑miR‑34c‑5p, hsa‑miR‑708‑5p, and hsa‑miR‑1271‑5p) and 5 genes (MET, CACNB3, TNS3, TTYH3, and HBEGF) was proposed to participate in the LTA‑induced signaling network. 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source Spandidos Publications Journals; MEDLINE; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection
subjects Analysis
Bacteria
Biotechnology industries
Cell adhesion & migration
Cellular signal transduction
Chemokines
Computational biology
Computational Biology - methods
Cytokines
Gene expression
Gene Expression Profiling
Gene Expression Regulation
Gene Ontology
Gene Regulatory Networks
Genes
Genomes
Gram-positive bacteria
Granulocytes
High-Throughput Nucleotide Sequencing
Humans
Immunophenotyping
Instrument industry (Equipment)
Ligands
Lipopolysaccharides - immunology
Localization
Messenger RNA
MicroRNA
MicroRNAs
MicroRNAs - genetics
Motility
Neutrophils
Neutrophils - immunology
Neutrophils - metabolism
Novels
Ontology
Organic acids
Pathogenic microorganisms
Penicillin G
RNA
RNA Interference
RNA, Messenger - genetics
Scientific equipment industry
Signal transduction
Software
Staphylococcus aureus
Teichoic Acids - immunology
Tumor necrosis factor-TNF
title Next-generation sequencing predicts interaction network between miRNA and target genes in lipoteichoic acid-stimulated human neutrophils
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