Rational Design of a Histidine–Methionine Site Modeling the M‑Center of Copper Monooxygenases in a Small Metallochaperone Scaffold

Mononuclear copper monooxygenases peptidylglycine monooxygenase (PHM) and dopamine β-monooxygenase (DBM) catalyze the hydroxylation of high energy C–H bonds utilizing a pair of chemically distinct copper sites (CuH and CuM) separated by 11 Å. In earlier work, we constructed single-site PHM variants...

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Veröffentlicht in:Biochemistry (Easton) 2019-07, Vol.58 (28), p.3097-3108
Hauptverfasser: Alwan, Katherine B, Welch, Evan F, Arias, Renee J, Gambill, Ben F, Blackburn, Ninian J
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container_end_page 3108
container_issue 28
container_start_page 3097
container_title Biochemistry (Easton)
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creator Alwan, Katherine B
Welch, Evan F
Arias, Renee J
Gambill, Ben F
Blackburn, Ninian J
description Mononuclear copper monooxygenases peptidylglycine monooxygenase (PHM) and dopamine β-monooxygenase (DBM) catalyze the hydroxylation of high energy C–H bonds utilizing a pair of chemically distinct copper sites (CuH and CuM) separated by 11 Å. In earlier work, we constructed single-site PHM variants that were designed to allow the study of the M- and H-centers independently in order to place their reactivity sequentially along the catalytic pathway. More recent crystallographic studies suggest that these single-site variants may not be truly representative of the individual active sites. In this work, we describe an alternative approach that uses a rational design to construct an artificial PHM model in a small metallochaperone scaffold. Using site-directed mutagenesis, we constructed variants that provide a His2Met copper-binding ligand set that mimics the M-center of PHM. The results show that the model accurately reproduces the chemical and spectroscopic properties of the M-center, including details of the methionine coordination, and the properties of Cu­(I) and Cu­(II) states in the presence of endogenous ligands such as CO and azide. The rate of reduction of the Cu­(II) form of the model by the chromophoric reductant N,N′-dimethyl phenylenediamine (DMPD) has been compared with that of the PHM M-center, and the reaction chemistry of the Cu­(I) forms with molecular oxygen has also been explored, revealing an unusually low reactivity toward molecular oxygen. This latter finding emphasizes the importance of substrate triggering of oxygen reactivity and implies that the His2Met ligand set, while necessary, is insufficient on its own to activate oxygen in these enzyme systems.
doi_str_mv 10.1021/acs.biochem.9b00312
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The rate of reduction of the Cu­(II) form of the model by the chromophoric reductant N,N′-dimethyl phenylenediamine (DMPD) has been compared with that of the PHM M-center, and the reaction chemistry of the Cu­(I) forms with molecular oxygen has also been explored, revealing an unusually low reactivity toward molecular oxygen. 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Welch, Evan F ; Arias, Renee J ; Gambill, Ben F ; Blackburn, Ninian J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a478t-f2889b6238adc4958d67590cd42dedb302136fae8eecf5a1971defd0b24361bb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>active sites</topic><topic>Animals</topic><topic>azides</topic><topic>Binding Sites - physiology</topic><topic>catalytic activity</topic><topic>chemical bonding</topic><topic>copper</topic><topic>Copper - chemistry</topic><topic>Copper - metabolism</topic><topic>dopamine</topic><topic>dopamine beta-monooxygenase</topic><topic>energy</topic><topic>Histidine - chemistry</topic><topic>Histidine - metabolism</topic><topic>hydroxylation</topic><topic>ligands</topic><topic>Metallochaperones - chemistry</topic><topic>Metallochaperones - metabolism</topic><topic>methionine</topic><topic>Methionine - chemistry</topic><topic>Methionine - metabolism</topic><topic>Mixed Function Oxygenases - chemistry</topic><topic>Mixed Function Oxygenases - metabolism</topic><topic>Models, Chemical</topic><topic>oxygen</topic><topic>Protein Structure, Secondary</topic><topic>reducing agents</topic><topic>site-directed mutagenesis</topic><topic>spectral analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Alwan, Katherine B</creatorcontrib><creatorcontrib>Welch, Evan F</creatorcontrib><creatorcontrib>Arias, Renee J</creatorcontrib><creatorcontrib>Gambill, Ben F</creatorcontrib><creatorcontrib>Blackburn, Ninian J</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Biochemistry (Easton)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Alwan, Katherine B</au><au>Welch, Evan F</au><au>Arias, Renee J</au><au>Gambill, Ben F</au><au>Blackburn, Ninian J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rational Design of a Histidine–Methionine Site Modeling the M‑Center of Copper Monooxygenases in a Small Metallochaperone Scaffold</atitle><jtitle>Biochemistry (Easton)</jtitle><addtitle>Biochemistry</addtitle><date>2019-07-16</date><risdate>2019</risdate><volume>58</volume><issue>28</issue><spage>3097</spage><epage>3108</epage><pages>3097-3108</pages><issn>0006-2960</issn><issn>1520-4995</issn><eissn>1520-4995</eissn><abstract>Mononuclear copper monooxygenases peptidylglycine monooxygenase (PHM) and dopamine β-monooxygenase (DBM) catalyze the hydroxylation of high energy C–H bonds utilizing a pair of chemically distinct copper sites (CuH and CuM) separated by 11 Å. In earlier work, we constructed single-site PHM variants that were designed to allow the study of the M- and H-centers independently in order to place their reactivity sequentially along the catalytic pathway. More recent crystallographic studies suggest that these single-site variants may not be truly representative of the individual active sites. In this work, we describe an alternative approach that uses a rational design to construct an artificial PHM model in a small metallochaperone scaffold. Using site-directed mutagenesis, we constructed variants that provide a His2Met copper-binding ligand set that mimics the M-center of PHM. The results show that the model accurately reproduces the chemical and spectroscopic properties of the M-center, including details of the methionine coordination, and the properties of Cu­(I) and Cu­(II) states in the presence of endogenous ligands such as CO and azide. The rate of reduction of the Cu­(II) form of the model by the chromophoric reductant N,N′-dimethyl phenylenediamine (DMPD) has been compared with that of the PHM M-center, and the reaction chemistry of the Cu­(I) forms with molecular oxygen has also been explored, revealing an unusually low reactivity toward molecular oxygen. This latter finding emphasizes the importance of substrate triggering of oxygen reactivity and implies that the His2Met ligand set, while necessary, is insufficient on its own to activate oxygen in these enzyme systems.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>31243953</pmid><doi>10.1021/acs.biochem.9b00312</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-9755-7838</orcidid><oa>free_for_read</oa></addata></record>
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subjects active sites
Animals
azides
Binding Sites - physiology
catalytic activity
chemical bonding
copper
Copper - chemistry
Copper - metabolism
dopamine
dopamine beta-monooxygenase
energy
Histidine - chemistry
Histidine - metabolism
hydroxylation
ligands
Metallochaperones - chemistry
Metallochaperones - metabolism
methionine
Methionine - chemistry
Methionine - metabolism
Mixed Function Oxygenases - chemistry
Mixed Function Oxygenases - metabolism
Models, Chemical
oxygen
Protein Structure, Secondary
reducing agents
site-directed mutagenesis
spectral analysis
title Rational Design of a Histidine–Methionine Site Modeling the M‑Center of Copper Monooxygenases in a Small Metallochaperone Scaffold
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