Rational Design of a Histidine–Methionine Site Modeling the M‑Center of Copper Monooxygenases in a Small Metallochaperone Scaffold
Mononuclear copper monooxygenases peptidylglycine monooxygenase (PHM) and dopamine β-monooxygenase (DBM) catalyze the hydroxylation of high energy C–H bonds utilizing a pair of chemically distinct copper sites (CuH and CuM) separated by 11 Å. In earlier work, we constructed single-site PHM variants...
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Veröffentlicht in: | Biochemistry (Easton) 2019-07, Vol.58 (28), p.3097-3108 |
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description | Mononuclear copper monooxygenases peptidylglycine monooxygenase (PHM) and dopamine β-monooxygenase (DBM) catalyze the hydroxylation of high energy C–H bonds utilizing a pair of chemically distinct copper sites (CuH and CuM) separated by 11 Å. In earlier work, we constructed single-site PHM variants that were designed to allow the study of the M- and H-centers independently in order to place their reactivity sequentially along the catalytic pathway. More recent crystallographic studies suggest that these single-site variants may not be truly representative of the individual active sites. In this work, we describe an alternative approach that uses a rational design to construct an artificial PHM model in a small metallochaperone scaffold. Using site-directed mutagenesis, we constructed variants that provide a His2Met copper-binding ligand set that mimics the M-center of PHM. The results show that the model accurately reproduces the chemical and spectroscopic properties of the M-center, including details of the methionine coordination, and the properties of Cu(I) and Cu(II) states in the presence of endogenous ligands such as CO and azide. The rate of reduction of the Cu(II) form of the model by the chromophoric reductant N,N′-dimethyl phenylenediamine (DMPD) has been compared with that of the PHM M-center, and the reaction chemistry of the Cu(I) forms with molecular oxygen has also been explored, revealing an unusually low reactivity toward molecular oxygen. This latter finding emphasizes the importance of substrate triggering of oxygen reactivity and implies that the His2Met ligand set, while necessary, is insufficient on its own to activate oxygen in these enzyme systems. |
doi_str_mv | 10.1021/acs.biochem.9b00312 |
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In earlier work, we constructed single-site PHM variants that were designed to allow the study of the M- and H-centers independently in order to place their reactivity sequentially along the catalytic pathway. More recent crystallographic studies suggest that these single-site variants may not be truly representative of the individual active sites. In this work, we describe an alternative approach that uses a rational design to construct an artificial PHM model in a small metallochaperone scaffold. Using site-directed mutagenesis, we constructed variants that provide a His2Met copper-binding ligand set that mimics the M-center of PHM. The results show that the model accurately reproduces the chemical and spectroscopic properties of the M-center, including details of the methionine coordination, and the properties of Cu(I) and Cu(II) states in the presence of endogenous ligands such as CO and azide. The rate of reduction of the Cu(II) form of the model by the chromophoric reductant N,N′-dimethyl phenylenediamine (DMPD) has been compared with that of the PHM M-center, and the reaction chemistry of the Cu(I) forms with molecular oxygen has also been explored, revealing an unusually low reactivity toward molecular oxygen. This latter finding emphasizes the importance of substrate triggering of oxygen reactivity and implies that the His2Met ligand set, while necessary, is insufficient on its own to activate oxygen in these enzyme systems.</description><identifier>ISSN: 0006-2960</identifier><identifier>ISSN: 1520-4995</identifier><identifier>EISSN: 1520-4995</identifier><identifier>DOI: 10.1021/acs.biochem.9b00312</identifier><identifier>PMID: 31243953</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>active sites ; Animals ; azides ; Binding Sites - physiology ; catalytic activity ; chemical bonding ; copper ; Copper - chemistry ; Copper - metabolism ; dopamine ; dopamine beta-monooxygenase ; energy ; Histidine - chemistry ; Histidine - metabolism ; hydroxylation ; ligands ; Metallochaperones - chemistry ; Metallochaperones - metabolism ; methionine ; Methionine - chemistry ; Methionine - metabolism ; Mixed Function Oxygenases - chemistry ; Mixed Function Oxygenases - metabolism ; Models, Chemical ; oxygen ; Protein Structure, Secondary ; reducing agents ; site-directed mutagenesis ; spectral analysis</subject><ispartof>Biochemistry (Easton), 2019-07, Vol.58 (28), p.3097-3108</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a478t-f2889b6238adc4958d67590cd42dedb302136fae8eecf5a1971defd0b24361bb3</citedby><cites>FETCH-LOGICAL-a478t-f2889b6238adc4958d67590cd42dedb302136fae8eecf5a1971defd0b24361bb3</cites><orcidid>0000-0002-9755-7838</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acs.biochem.9b00312$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acs.biochem.9b00312$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>230,314,776,780,881,2752,27053,27901,27902,56713,56763</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31243953$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Alwan, Katherine B</creatorcontrib><creatorcontrib>Welch, Evan F</creatorcontrib><creatorcontrib>Arias, Renee J</creatorcontrib><creatorcontrib>Gambill, Ben F</creatorcontrib><creatorcontrib>Blackburn, Ninian J</creatorcontrib><title>Rational Design of a Histidine–Methionine Site Modeling the M‑Center of Copper Monooxygenases in a Small Metallochaperone Scaffold</title><title>Biochemistry (Easton)</title><addtitle>Biochemistry</addtitle><description>Mononuclear copper monooxygenases peptidylglycine monooxygenase (PHM) and dopamine β-monooxygenase (DBM) catalyze the hydroxylation of high energy C–H bonds utilizing a pair of chemically distinct copper sites (CuH and CuM) separated by 11 Å. In earlier work, we constructed single-site PHM variants that were designed to allow the study of the M- and H-centers independently in order to place their reactivity sequentially along the catalytic pathway. More recent crystallographic studies suggest that these single-site variants may not be truly representative of the individual active sites. In this work, we describe an alternative approach that uses a rational design to construct an artificial PHM model in a small metallochaperone scaffold. Using site-directed mutagenesis, we constructed variants that provide a His2Met copper-binding ligand set that mimics the M-center of PHM. The results show that the model accurately reproduces the chemical and spectroscopic properties of the M-center, including details of the methionine coordination, and the properties of Cu(I) and Cu(II) states in the presence of endogenous ligands such as CO and azide. The rate of reduction of the Cu(II) form of the model by the chromophoric reductant N,N′-dimethyl phenylenediamine (DMPD) has been compared with that of the PHM M-center, and the reaction chemistry of the Cu(I) forms with molecular oxygen has also been explored, revealing an unusually low reactivity toward molecular oxygen. This latter finding emphasizes the importance of substrate triggering of oxygen reactivity and implies that the His2Met ligand set, while necessary, is insufficient on its own to activate oxygen in these enzyme systems.</description><subject>active sites</subject><subject>Animals</subject><subject>azides</subject><subject>Binding Sites - physiology</subject><subject>catalytic activity</subject><subject>chemical bonding</subject><subject>copper</subject><subject>Copper - chemistry</subject><subject>Copper - metabolism</subject><subject>dopamine</subject><subject>dopamine beta-monooxygenase</subject><subject>energy</subject><subject>Histidine - chemistry</subject><subject>Histidine - metabolism</subject><subject>hydroxylation</subject><subject>ligands</subject><subject>Metallochaperones - chemistry</subject><subject>Metallochaperones - metabolism</subject><subject>methionine</subject><subject>Methionine - chemistry</subject><subject>Methionine - metabolism</subject><subject>Mixed Function Oxygenases - chemistry</subject><subject>Mixed Function Oxygenases - metabolism</subject><subject>Models, Chemical</subject><subject>oxygen</subject><subject>Protein Structure, Secondary</subject><subject>reducing agents</subject><subject>site-directed mutagenesis</subject><subject>spectral analysis</subject><issn>0006-2960</issn><issn>1520-4995</issn><issn>1520-4995</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1uEzEUhS0EakPpEyChWbKZ1D_z5w0SCoUiNapEYW157OvElccO4wlqd12xR7xhn4QbJVSw6er6yud899qHkNeMzhnl7EybPO99MmsY5rKnVDD-jMxYzWlZSVk_JzNKaVNy2dBj8jLnG2wr2lZH5BillZC1mJGfX_TkU9Sh-ADZr2KRXKGLC58nb32Eh_vfS5jWqMCmuPYTFMtkIfi4KqY1Ng_3vxYQJxh3xkXabPC0TDGl27sVRJ0hFz4i8XrQIRTIwoIra9SlHdFo51Kwr8gLp0OG00M9Id8-nn9dXJSXV58-L95flrpqu6l0vOtk33DRaWsqWXe2aWtJja24BdsL_BbROA0dgHG1ZrJlFpylPT63YX0vTsi7PXez7QewBlcfdVCb0Q96vFNJe_X_TfRrtUo_VNMim0sEvD0AxvR9C3lSg88GQtAR0jYrLmjN6rbpBErFXmrGlPMI7nEMo2qXoMIE1SFBdUgQXW_-3fDR8zcyFJztBTv3TdqOGF5-EvkHv1Cvgw</recordid><startdate>20190716</startdate><enddate>20190716</enddate><creator>Alwan, Katherine B</creator><creator>Welch, Evan F</creator><creator>Arias, Renee J</creator><creator>Gambill, Ben F</creator><creator>Blackburn, Ninian J</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7S9</scope><scope>L.6</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-9755-7838</orcidid></search><sort><creationdate>20190716</creationdate><title>Rational Design of a Histidine–Methionine Site Modeling the M‑Center of Copper Monooxygenases in a Small Metallochaperone Scaffold</title><author>Alwan, Katherine B ; Welch, Evan F ; Arias, Renee J ; Gambill, Ben F ; Blackburn, Ninian J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a478t-f2889b6238adc4958d67590cd42dedb302136fae8eecf5a1971defd0b24361bb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>active sites</topic><topic>Animals</topic><topic>azides</topic><topic>Binding Sites - physiology</topic><topic>catalytic activity</topic><topic>chemical bonding</topic><topic>copper</topic><topic>Copper - chemistry</topic><topic>Copper - metabolism</topic><topic>dopamine</topic><topic>dopamine beta-monooxygenase</topic><topic>energy</topic><topic>Histidine - chemistry</topic><topic>Histidine - metabolism</topic><topic>hydroxylation</topic><topic>ligands</topic><topic>Metallochaperones - chemistry</topic><topic>Metallochaperones - metabolism</topic><topic>methionine</topic><topic>Methionine - chemistry</topic><topic>Methionine - metabolism</topic><topic>Mixed Function Oxygenases - chemistry</topic><topic>Mixed Function Oxygenases - metabolism</topic><topic>Models, Chemical</topic><topic>oxygen</topic><topic>Protein Structure, Secondary</topic><topic>reducing agents</topic><topic>site-directed mutagenesis</topic><topic>spectral analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Alwan, Katherine B</creatorcontrib><creatorcontrib>Welch, Evan F</creatorcontrib><creatorcontrib>Arias, Renee J</creatorcontrib><creatorcontrib>Gambill, Ben F</creatorcontrib><creatorcontrib>Blackburn, Ninian J</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Biochemistry (Easton)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Alwan, Katherine B</au><au>Welch, Evan F</au><au>Arias, Renee J</au><au>Gambill, Ben F</au><au>Blackburn, Ninian J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rational Design of a Histidine–Methionine Site Modeling the M‑Center of Copper Monooxygenases in a Small Metallochaperone Scaffold</atitle><jtitle>Biochemistry (Easton)</jtitle><addtitle>Biochemistry</addtitle><date>2019-07-16</date><risdate>2019</risdate><volume>58</volume><issue>28</issue><spage>3097</spage><epage>3108</epage><pages>3097-3108</pages><issn>0006-2960</issn><issn>1520-4995</issn><eissn>1520-4995</eissn><abstract>Mononuclear copper monooxygenases peptidylglycine monooxygenase (PHM) and dopamine β-monooxygenase (DBM) catalyze the hydroxylation of high energy C–H bonds utilizing a pair of chemically distinct copper sites (CuH and CuM) separated by 11 Å. In earlier work, we constructed single-site PHM variants that were designed to allow the study of the M- and H-centers independently in order to place their reactivity sequentially along the catalytic pathway. More recent crystallographic studies suggest that these single-site variants may not be truly representative of the individual active sites. In this work, we describe an alternative approach that uses a rational design to construct an artificial PHM model in a small metallochaperone scaffold. Using site-directed mutagenesis, we constructed variants that provide a His2Met copper-binding ligand set that mimics the M-center of PHM. The results show that the model accurately reproduces the chemical and spectroscopic properties of the M-center, including details of the methionine coordination, and the properties of Cu(I) and Cu(II) states in the presence of endogenous ligands such as CO and azide. The rate of reduction of the Cu(II) form of the model by the chromophoric reductant N,N′-dimethyl phenylenediamine (DMPD) has been compared with that of the PHM M-center, and the reaction chemistry of the Cu(I) forms with molecular oxygen has also been explored, revealing an unusually low reactivity toward molecular oxygen. This latter finding emphasizes the importance of substrate triggering of oxygen reactivity and implies that the His2Met ligand set, while necessary, is insufficient on its own to activate oxygen in these enzyme systems.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>31243953</pmid><doi>10.1021/acs.biochem.9b00312</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-9755-7838</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | active sites Animals azides Binding Sites - physiology catalytic activity chemical bonding copper Copper - chemistry Copper - metabolism dopamine dopamine beta-monooxygenase energy Histidine - chemistry Histidine - metabolism hydroxylation ligands Metallochaperones - chemistry Metallochaperones - metabolism methionine Methionine - chemistry Methionine - metabolism Mixed Function Oxygenases - chemistry Mixed Function Oxygenases - metabolism Models, Chemical oxygen Protein Structure, Secondary reducing agents site-directed mutagenesis spectral analysis |
title | Rational Design of a Histidine–Methionine Site Modeling the M‑Center of Copper Monooxygenases in a Small Metallochaperone Scaffold |
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