Drugging an undruggable pocket on KRAS
The 3 human RAS genes, KRAS, NRAS, and HRAS, encode 4 different RAS proteins which belong to the protein family of small GTPases that function as binary molecular switches involved in cell signaling. Activating mutations in RAS are among the most common oncogenic drivers in human cancers, with KRAS...
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creator | Kesslera, Dirk Gmachla, Michael Mantoulidisa, Andreas Martin, Laetitia J. Zoephel, Andreas Mayer, Moriz Gollner, Andreas Covini, David Fischer, Silke Gerstberger, Thomas Gmaschitz, Teresa Goodwin, Craig Greb, Peter Häring, Daniela Hela, Wolfgang Hoffmann, Johann Karolyi-Oezguer, Jale Knesl, Petr Kornigg, Stefan Koegl, Manfred Kousek, Roland Lamarre, Lyne Moser, Franziska Munico-Martinez, Silvia Peinsipp, Christoph Phan, Jason Rinnenthal, Jörg Sai, Jiqing Salamon, Christian Scherbantin, Yvonne Schipany, Katharina Schnitzer, Renate Schrenk, Andreas Sharps, Bernadette Siszler, Gabriella Sun, Qi Waterson, Alex Wolkerstorfer, Bernhard Zeeb, Markus Pearson, Mark Fesik, Stephen W. McConnell, Darryl B. |
description | The 3 human RAS genes, KRAS, NRAS, and HRAS, encode 4 different RAS proteins which belong to the protein family of small GTPases that function as binary molecular switches involved in cell signaling. Activating mutations in RAS are among the most common oncogenic drivers in human cancers, with KRAS being the most frequently mutated oncogene. Although KRAS is an excellent drug discovery target for many cancers, and despite decades of research, no therapeutic agent directly targeting RAS has been clinically approved. Using structure-based drug design, we have discovered BI-2852 (1), a KRAS inhibitor that binds with nanomolar affinity to a pocket, thus far perceived to be “undruggable,” between switch I and II on RAS; 1 is mechanistically distinct from covalent KRASG12C inhibitors because it binds to a different pocket present in both the active and inactive forms of KRAS. In doing so, it blocks all GEF, GAP, and effector interactions with KRAS, leading to inhibition of downstream signaling and an antiproliferative effect in the low micromolar range in KRAS mutant cells. These findings clearly demonstrate that this so-called switch I/II pocket is indeed druggable and provide the scientific community with a chemical probe that simultaneously targets the active and inactive forms of KRAS. |
doi_str_mv | 10.1073/pnas.1904529116 |
format | Article |
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Advanced Photon Source (APS)</creatorcontrib><description>The 3 human RAS genes, KRAS, NRAS, and HRAS, encode 4 different RAS proteins which belong to the protein family of small GTPases that function as binary molecular switches involved in cell signaling. Activating mutations in RAS are among the most common oncogenic drivers in human cancers, with KRAS being the most frequently mutated oncogene. Although KRAS is an excellent drug discovery target for many cancers, and despite decades of research, no therapeutic agent directly targeting RAS has been clinically approved. Using structure-based drug design, we have discovered BI-2852 (1), a KRAS inhibitor that binds with nanomolar affinity to a pocket, thus far perceived to be “undruggable,” between switch I and II on RAS; 1 is mechanistically distinct from covalent KRASG12C inhibitors because it binds to a different pocket present in both the active and inactive forms of KRAS. In doing so, it blocks all GEF, GAP, and effector interactions with KRAS, leading to inhibition of downstream signaling and an antiproliferative effect in the low micromolar range in KRAS mutant cells. These findings clearly demonstrate that this so-called switch I/II pocket is indeed druggable and provide the scientific community with a chemical probe that simultaneously targets the active and inactive forms of KRAS.</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.1904529116</identifier><identifier>PMID: 31332011</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>60 APPLIED LIFE SCIENCES ; Biological Sciences ; Chemical compounds ; Downstream effects ; Drug development ; Drug Discovery ; fragment-based drug design ; Guanosine Triphosphate - metabolism ; Humans ; K-Ras protein ; KRAS ; Models, Molecular ; Molecular machines ; Mutation ; Nanoparticles - chemistry ; NMR ; oncology ; Organic chemistry ; Pharmaceutical Preparations - chemistry ; Pharmacology ; Physical Sciences ; PNAS Plus ; Proteins ; Proto-Oncogene Proteins p21(ras) - chemistry ; Signaling ; structure-based drug design ; Switches</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2019-08, Vol.116 (32), p.15823-15829</ispartof><rights>Copyright © 2019 the Author(s). Published by PNAS.</rights><rights>Copyright National Academy of Sciences Aug 6, 2019</rights><rights>Copyright © 2019 the Author(s). Published by PNAS. 2019</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c536t-4c4e09dea2a16759a92d1a3da2f094095b399bcfb07f637f3c51dabee8741d053</citedby><cites>FETCH-LOGICAL-c536t-4c4e09dea2a16759a92d1a3da2f094095b399bcfb07f637f3c51dabee8741d053</cites><orcidid>0000-0002-2537-3458 ; 0000000225373458</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26848431$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26848431$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,315,728,781,785,804,886,27929,27930,53796,53798,58022,58255</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31332011$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/servlets/purl/1593440$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Kesslera, Dirk</creatorcontrib><creatorcontrib>Gmachla, Michael</creatorcontrib><creatorcontrib>Mantoulidisa, Andreas</creatorcontrib><creatorcontrib>Martin, Laetitia J.</creatorcontrib><creatorcontrib>Zoephel, Andreas</creatorcontrib><creatorcontrib>Mayer, Moriz</creatorcontrib><creatorcontrib>Gollner, Andreas</creatorcontrib><creatorcontrib>Covini, David</creatorcontrib><creatorcontrib>Fischer, Silke</creatorcontrib><creatorcontrib>Gerstberger, Thomas</creatorcontrib><creatorcontrib>Gmaschitz, Teresa</creatorcontrib><creatorcontrib>Goodwin, Craig</creatorcontrib><creatorcontrib>Greb, Peter</creatorcontrib><creatorcontrib>Häring, Daniela</creatorcontrib><creatorcontrib>Hela, Wolfgang</creatorcontrib><creatorcontrib>Hoffmann, Johann</creatorcontrib><creatorcontrib>Karolyi-Oezguer, Jale</creatorcontrib><creatorcontrib>Knesl, Petr</creatorcontrib><creatorcontrib>Kornigg, Stefan</creatorcontrib><creatorcontrib>Koegl, Manfred</creatorcontrib><creatorcontrib>Kousek, Roland</creatorcontrib><creatorcontrib>Lamarre, Lyne</creatorcontrib><creatorcontrib>Moser, Franziska</creatorcontrib><creatorcontrib>Munico-Martinez, Silvia</creatorcontrib><creatorcontrib>Peinsipp, Christoph</creatorcontrib><creatorcontrib>Phan, Jason</creatorcontrib><creatorcontrib>Rinnenthal, Jörg</creatorcontrib><creatorcontrib>Sai, Jiqing</creatorcontrib><creatorcontrib>Salamon, Christian</creatorcontrib><creatorcontrib>Scherbantin, Yvonne</creatorcontrib><creatorcontrib>Schipany, Katharina</creatorcontrib><creatorcontrib>Schnitzer, Renate</creatorcontrib><creatorcontrib>Schrenk, Andreas</creatorcontrib><creatorcontrib>Sharps, Bernadette</creatorcontrib><creatorcontrib>Siszler, Gabriella</creatorcontrib><creatorcontrib>Sun, Qi</creatorcontrib><creatorcontrib>Waterson, Alex</creatorcontrib><creatorcontrib>Wolkerstorfer, Bernhard</creatorcontrib><creatorcontrib>Zeeb, Markus</creatorcontrib><creatorcontrib>Pearson, Mark</creatorcontrib><creatorcontrib>Fesik, Stephen W.</creatorcontrib><creatorcontrib>McConnell, Darryl B.</creatorcontrib><creatorcontrib>Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)</creatorcontrib><title>Drugging an undruggable pocket on KRAS</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>The 3 human RAS genes, KRAS, NRAS, and HRAS, encode 4 different RAS proteins which belong to the protein family of small GTPases that function as binary molecular switches involved in cell signaling. Activating mutations in RAS are among the most common oncogenic drivers in human cancers, with KRAS being the most frequently mutated oncogene. Although KRAS is an excellent drug discovery target for many cancers, and despite decades of research, no therapeutic agent directly targeting RAS has been clinically approved. Using structure-based drug design, we have discovered BI-2852 (1), a KRAS inhibitor that binds with nanomolar affinity to a pocket, thus far perceived to be “undruggable,” between switch I and II on RAS; 1 is mechanistically distinct from covalent KRASG12C inhibitors because it binds to a different pocket present in both the active and inactive forms of KRAS. In doing so, it blocks all GEF, GAP, and effector interactions with KRAS, leading to inhibition of downstream signaling and an antiproliferative effect in the low micromolar range in KRAS mutant cells. These findings clearly demonstrate that this so-called switch I/II pocket is indeed druggable and provide the scientific community with a chemical probe that simultaneously targets the active and inactive forms of KRAS.</description><subject>60 APPLIED LIFE SCIENCES</subject><subject>Biological Sciences</subject><subject>Chemical compounds</subject><subject>Downstream effects</subject><subject>Drug development</subject><subject>Drug Discovery</subject><subject>fragment-based drug design</subject><subject>Guanosine Triphosphate - metabolism</subject><subject>Humans</subject><subject>K-Ras protein</subject><subject>KRAS</subject><subject>Models, Molecular</subject><subject>Molecular machines</subject><subject>Mutation</subject><subject>Nanoparticles - chemistry</subject><subject>NMR</subject><subject>oncology</subject><subject>Organic chemistry</subject><subject>Pharmaceutical Preparations - chemistry</subject><subject>Pharmacology</subject><subject>Physical Sciences</subject><subject>PNAS Plus</subject><subject>Proteins</subject><subject>Proto-Oncogene Proteins p21(ras) - chemistry</subject><subject>Signaling</subject><subject>structure-based drug design</subject><subject>Switches</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkMtLAzEQxoMotj7OnpRFwdu2M0n2kYtQfGNB8HEO2Wy23VqTmuwK_vduaa16Gob5zTfffIQcIQwQMjZcWBUGKIAnVCCmW6SPIDBOuYBt0gegWZxzyntkL4QZAIgkh13SY8gYBcQ-Ob_y7WRS20mkbNTactmpYm6ihdNvpomcjR6eRs8HZKdS82AO13WfvN5cv1zexePH2_vL0TjWCUubmGtuQJRGUYVplgglaImKlYpWIHh3vWBCFLoqIKtSllVMJ1iqwpg841hCwvbJxUp30RbvptTGNl7N5cLX78p_Sadq-X9i66mcuE-ZprnIRdYJnK4EXGhqGXTdGD3VzlqjG4mJYJxDB52tr3j30ZrQyJlrve0ek5RmlCLlmHfUcEVp70LwptrYQJDL9OUyffmbfrdx8tf9hv-JuwOOV8AsNM5v5jTNec476hvBHojM</recordid><startdate>20190806</startdate><enddate>20190806</enddate><creator>Kesslera, Dirk</creator><creator>Gmachla, Michael</creator><creator>Mantoulidisa, Andreas</creator><creator>Martin, Laetitia J.</creator><creator>Zoephel, Andreas</creator><creator>Mayer, Moriz</creator><creator>Gollner, Andreas</creator><creator>Covini, David</creator><creator>Fischer, Silke</creator><creator>Gerstberger, Thomas</creator><creator>Gmaschitz, Teresa</creator><creator>Goodwin, Craig</creator><creator>Greb, Peter</creator><creator>Häring, Daniela</creator><creator>Hela, Wolfgang</creator><creator>Hoffmann, Johann</creator><creator>Karolyi-Oezguer, Jale</creator><creator>Knesl, Petr</creator><creator>Kornigg, Stefan</creator><creator>Koegl, Manfred</creator><creator>Kousek, Roland</creator><creator>Lamarre, Lyne</creator><creator>Moser, Franziska</creator><creator>Munico-Martinez, Silvia</creator><creator>Peinsipp, Christoph</creator><creator>Phan, Jason</creator><creator>Rinnenthal, Jörg</creator><creator>Sai, Jiqing</creator><creator>Salamon, Christian</creator><creator>Scherbantin, Yvonne</creator><creator>Schipany, Katharina</creator><creator>Schnitzer, Renate</creator><creator>Schrenk, Andreas</creator><creator>Sharps, Bernadette</creator><creator>Siszler, Gabriella</creator><creator>Sun, Qi</creator><creator>Waterson, Alex</creator><creator>Wolkerstorfer, Bernhard</creator><creator>Zeeb, Markus</creator><creator>Pearson, Mark</creator><creator>Fesik, Stephen W.</creator><creator>McConnell, Darryl B.</creator><general>National Academy of Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>OIOZB</scope><scope>OTOTI</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-2537-3458</orcidid><orcidid>https://orcid.org/0000000225373458</orcidid></search><sort><creationdate>20190806</creationdate><title>Drugging an undruggable pocket on KRAS</title><author>Kesslera, Dirk ; 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Advanced Photon Source (APS)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Drugging an undruggable pocket on KRAS</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2019-08-06</date><risdate>2019</risdate><volume>116</volume><issue>32</issue><spage>15823</spage><epage>15829</epage><pages>15823-15829</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><abstract>The 3 human RAS genes, KRAS, NRAS, and HRAS, encode 4 different RAS proteins which belong to the protein family of small GTPases that function as binary molecular switches involved in cell signaling. Activating mutations in RAS are among the most common oncogenic drivers in human cancers, with KRAS being the most frequently mutated oncogene. Although KRAS is an excellent drug discovery target for many cancers, and despite decades of research, no therapeutic agent directly targeting RAS has been clinically approved. Using structure-based drug design, we have discovered BI-2852 (1), a KRAS inhibitor that binds with nanomolar affinity to a pocket, thus far perceived to be “undruggable,” between switch I and II on RAS; 1 is mechanistically distinct from covalent KRASG12C inhibitors because it binds to a different pocket present in both the active and inactive forms of KRAS. In doing so, it blocks all GEF, GAP, and effector interactions with KRAS, leading to inhibition of downstream signaling and an antiproliferative effect in the low micromolar range in KRAS mutant cells. These findings clearly demonstrate that this so-called switch I/II pocket is indeed druggable and provide the scientific community with a chemical probe that simultaneously targets the active and inactive forms of KRAS.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>31332011</pmid><doi>10.1073/pnas.1904529116</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-2537-3458</orcidid><orcidid>https://orcid.org/0000000225373458</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0027-8424 |
ispartof | Proceedings of the National Academy of Sciences - PNAS, 2019-08, Vol.116 (32), p.15823-15829 |
issn | 0027-8424 1091-6490 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_6689897 |
source | MEDLINE; JSTOR Archive Collection A-Z Listing; PubMed Central; Alma/SFX Local Collection; Free Full-Text Journals in Chemistry |
subjects | 60 APPLIED LIFE SCIENCES Biological Sciences Chemical compounds Downstream effects Drug development Drug Discovery fragment-based drug design Guanosine Triphosphate - metabolism Humans K-Ras protein KRAS Models, Molecular Molecular machines Mutation Nanoparticles - chemistry NMR oncology Organic chemistry Pharmaceutical Preparations - chemistry Pharmacology Physical Sciences PNAS Plus Proteins Proto-Oncogene Proteins p21(ras) - chemistry Signaling structure-based drug design Switches |
title | Drugging an undruggable pocket on KRAS |
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