Whole exome sequencing study of a Chinese concurrent cancer family
Cancer is one of the leading causes of mortality in China, and poses a threat to public health due to its increasing incidence and mortality rates. Concurrent cancer is defined as one or more organs in the same individual having ≥2 primary malignancies occurring simultaneously or successively; howev...
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Veröffentlicht in: | Experimental and therapeutic medicine 2019-09, Vol.18 (3), p.2619-2627 |
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creator | Yin, Yifa Wu, Shouxin Zhao, Xincheng Zou, Liyong Luo, Aihua Deng, Fei Min, Mengyun Jiang, Lisha Liu, Huimin Wu, Xiangbai |
description | Cancer is one of the leading causes of mortality in China, and poses a threat to public health due to its increasing incidence and mortality rates. Concurrent cancer is defined as one or more organs in the same individual having ≥2 primary malignancies occurring simultaneously or successively; however, concurrent cases are rare and poorly studied. The present study recruited a Chinese family presenting multiple cases of concurrent cancer and performed whole exome sequencing in one unaffected and two affected individuals to identify the causative mutations. DNA was extracted from peripheral blood and tumor tissue samples. Following an exome capture and quality test, the qualified library was sequenced as 100 bp paired-end reads on an Ion Torrent platform. Clean data were obtained by filtering out the low-quality reads. Subsequently, bioinformatics analyses were performed using the clean data. After mapping and annotating in 1000 Genomes Project database, the existing SNP database and the Cancer Gene Census (CGC) database, it was revealed that the NADH:ubiquinone oxidoreductase core subunit S7 gene was a candidate gene with somatic mutations, and a subset of 16 genes were candidate genes with germline mutations. The findings of the present study may improve the understanding of the molecular pathogenesis of concurrent cancer. |
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Concurrent cancer is defined as one or more organs in the same individual having ≥2 primary malignancies occurring simultaneously or successively; however, concurrent cases are rare and poorly studied. The present study recruited a Chinese family presenting multiple cases of concurrent cancer and performed whole exome sequencing in one unaffected and two affected individuals to identify the causative mutations. DNA was extracted from peripheral blood and tumor tissue samples. Following an exome capture and quality test, the qualified library was sequenced as 100 bp paired-end reads on an Ion Torrent platform. Clean data were obtained by filtering out the low-quality reads. Subsequently, bioinformatics analyses were performed using the clean data. After mapping and annotating in 1000 Genomes Project database, the existing SNP database and the Cancer Gene Census (CGC) database, it was revealed that the NADH:ubiquinone oxidoreductase core subunit S7 gene was a candidate gene with somatic mutations, and a subset of 16 genes were candidate genes with germline mutations. The findings of the present study may improve the understanding of the molecular pathogenesis of concurrent cancer.</description><identifier>ISSN: 1792-1074</identifier><identifier>ISSN: 1792-0981</identifier><identifier>EISSN: 1792-1082</identifier><identifier>DOI: 10.3892/ol.2019.10573</identifier><identifier>PMID: 31452746</identifier><language>eng</language><publisher>Greece: Spandidos Publications</publisher><subject>Amino acids ; Cancer ; Cancer research ; Cell division ; China ; Computational biology ; Dehydrogenases ; Deoxyribonucleic acid ; DNA ; Family ; Gene mutation ; Genes ; Genetic testing ; Genomes ; Genomics ; Health aspects ; Mortality ; Mutation ; Oncology ; Patients ; Proteins ; Public health ; Single nucleotide polymorphisms ; Studies ; Tumors</subject><ispartof>Experimental and therapeutic medicine, 2019-09, Vol.18 (3), p.2619-2627</ispartof><rights>COPYRIGHT 2019 Spandidos Publications</rights><rights>Copyright Spandidos Publications UK Ltd. 2019</rights><rights>Copyright © 2019, Spandidos Publications 2019</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c536t-43f60a0924c6c0479eb514ce1290707f2a3586460240be01c925353c325e6dbe3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6676670/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6676670/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31452746$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yin, Yifa</creatorcontrib><creatorcontrib>Wu, Shouxin</creatorcontrib><creatorcontrib>Zhao, Xincheng</creatorcontrib><creatorcontrib>Zou, Liyong</creatorcontrib><creatorcontrib>Luo, Aihua</creatorcontrib><creatorcontrib>Deng, Fei</creatorcontrib><creatorcontrib>Min, Mengyun</creatorcontrib><creatorcontrib>Jiang, Lisha</creatorcontrib><creatorcontrib>Liu, Huimin</creatorcontrib><creatorcontrib>Wu, Xiangbai</creatorcontrib><title>Whole exome sequencing study of a Chinese concurrent cancer family</title><title>Experimental and therapeutic medicine</title><addtitle>Oncol Lett</addtitle><description>Cancer is one of the leading causes of mortality in China, and poses a threat to public health due to its increasing incidence and mortality rates. Concurrent cancer is defined as one or more organs in the same individual having ≥2 primary malignancies occurring simultaneously or successively; however, concurrent cases are rare and poorly studied. The present study recruited a Chinese family presenting multiple cases of concurrent cancer and performed whole exome sequencing in one unaffected and two affected individuals to identify the causative mutations. DNA was extracted from peripheral blood and tumor tissue samples. Following an exome capture and quality test, the qualified library was sequenced as 100 bp paired-end reads on an Ion Torrent platform. Clean data were obtained by filtering out the low-quality reads. Subsequently, bioinformatics analyses were performed using the clean data. After mapping and annotating in 1000 Genomes Project database, the existing SNP database and the Cancer Gene Census (CGC) database, it was revealed that the NADH:ubiquinone oxidoreductase core subunit S7 gene was a candidate gene with somatic mutations, and a subset of 16 genes were candidate genes with germline mutations. The findings of the present study may improve the understanding of the molecular pathogenesis of concurrent cancer.</description><subject>Amino acids</subject><subject>Cancer</subject><subject>Cancer research</subject><subject>Cell division</subject><subject>China</subject><subject>Computational biology</subject><subject>Dehydrogenases</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Family</subject><subject>Gene mutation</subject><subject>Genes</subject><subject>Genetic testing</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Health aspects</subject><subject>Mortality</subject><subject>Mutation</subject><subject>Oncology</subject><subject>Patients</subject><subject>Proteins</subject><subject>Public health</subject><subject>Single nucleotide polymorphisms</subject><subject>Studies</subject><subject>Tumors</subject><issn>1792-1074</issn><issn>1792-0981</issn><issn>1792-1082</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><recordid>eNqNks9rHCEUx4fS0IQkx16LUCi9zEafo85cCunSXxDopaVHcd03OwZHU50p3f--bpNusqHQqqDo533fD19VPWd0wdsOLqJfAGXdglGh-JPqhKkOakZbeLo_q-a4Os_5mpYhJGtb-aw65qwRoBp5Ur39NkSPBH_GEUnG7zMG68KG5Gleb0nsiSHLwQXMSGwMdk4Jw0SsCRYT6c3o_PasOuqNz3h-t59WX9-_-7L8WF99_vBpeXlVW8HlVDe8l9TQDhorLW1UhyvBGosMOqqo6sFw0cpGUmjoCimzHQguuOUgUK5XyE-rN7e6N_NqxLUtgSTj9U1yo0lbHY3Thy_BDXoTf2gpVVm0CLy-E0ixJJonPbps0XsTMM5ZA7SMMQqyLejLR-h1nFMo6RWqE1wp4HBPbYxH7UIfi1-7E9WXknImOMC_KCh_J-guuMVfqDLXOLpSeuxduT-Q_U-Dew-vHhgMaPw05OjnycWQD8H6FrQp5pyw39eYUb3rOx293vWd_t13hX_x8GP29J8u478AMhHNAA</recordid><startdate>20190901</startdate><enddate>20190901</enddate><creator>Yin, Yifa</creator><creator>Wu, Shouxin</creator><creator>Zhao, Xincheng</creator><creator>Zou, Liyong</creator><creator>Luo, Aihua</creator><creator>Deng, Fei</creator><creator>Min, Mengyun</creator><creator>Jiang, Lisha</creator><creator>Liu, Huimin</creator><creator>Wu, Xiangbai</creator><general>Spandidos Publications</general><general>Spandidos Publications UK Ltd</general><general>D.A. 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Concurrent cancer is defined as one or more organs in the same individual having ≥2 primary malignancies occurring simultaneously or successively; however, concurrent cases are rare and poorly studied. The present study recruited a Chinese family presenting multiple cases of concurrent cancer and performed whole exome sequencing in one unaffected and two affected individuals to identify the causative mutations. DNA was extracted from peripheral blood and tumor tissue samples. Following an exome capture and quality test, the qualified library was sequenced as 100 bp paired-end reads on an Ion Torrent platform. Clean data were obtained by filtering out the low-quality reads. Subsequently, bioinformatics analyses were performed using the clean data. After mapping and annotating in 1000 Genomes Project database, the existing SNP database and the Cancer Gene Census (CGC) database, it was revealed that the NADH:ubiquinone oxidoreductase core subunit S7 gene was a candidate gene with somatic mutations, and a subset of 16 genes were candidate genes with germline mutations. The findings of the present study may improve the understanding of the molecular pathogenesis of concurrent cancer.</abstract><cop>Greece</cop><pub>Spandidos Publications</pub><pmid>31452746</pmid><doi>10.3892/ol.2019.10573</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino acids Cancer Cancer research Cell division China Computational biology Dehydrogenases Deoxyribonucleic acid DNA Family Gene mutation Genes Genetic testing Genomes Genomics Health aspects Mortality Mutation Oncology Patients Proteins Public health Single nucleotide polymorphisms Studies Tumors |
title | Whole exome sequencing study of a Chinese concurrent cancer family |
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