The yeast scavenger decapping enzyme DcpS and its application for in vitro RNA recapping

Eukaryotic mRNAs are modified at their 5′ end early during transcription by the addition of N 7-methylguanosine (m 7 G), which forms the “cap” on the first 5′ nucleotide. Identification of the 5′ nucleotide on mRNA is necessary for determination of the Transcription Start Site (TSS). We explored the...

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Veröffentlicht in:Scientific reports 2019-06, Vol.9 (1), p.8594-9, Article 8594
Hauptverfasser: Wulf, Madalee G., Buswell, John, Chan, Siu-Hong, Dai, Nan, Marks, Katherine, Martin, Evan R., Tzertzinis, George, Whipple, Joseph M., Corrêa, Ivan R., Schildkraut, Ira
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container_issue 1
container_start_page 8594
container_title Scientific reports
container_volume 9
creator Wulf, Madalee G.
Buswell, John
Chan, Siu-Hong
Dai, Nan
Marks, Katherine
Martin, Evan R.
Tzertzinis, George
Whipple, Joseph M.
Corrêa, Ivan R.
Schildkraut, Ira
description Eukaryotic mRNAs are modified at their 5′ end early during transcription by the addition of N 7-methylguanosine (m 7 G), which forms the “cap” on the first 5′ nucleotide. Identification of the 5′ nucleotide on mRNA is necessary for determination of the Transcription Start Site (TSS). We explored the effect of various reaction conditions on the activity of the yeast scavenger mRNA decapping enzyme DcpS and examined decapping of 30 chemically distinct cap structures varying the state of methylation, sugar, phosphate linkage, and base composition on 25mer RNA oligonucleotides. Contrary to the generally accepted belief that DcpS enzymes only decap short oligonucleotides, we found that the yeast scavenger decapping enzyme decaps RNA transcripts as long as 1400 nucleotides. Further, we validated the application of yDcpS for enriching capped RNA using a strategy of specifically tagging the 5′ end of capped RNA by first decapping and then recapping it with an affinity-tagged guanosine nucleotide.
doi_str_mv 10.1038/s41598-019-45083-5
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subjects 38/71
38/90
631/337/1645
631/337/572
631/45/500
631/92/500
82/29
Base composition
Diphosphates - metabolism
Endoribonucleases - metabolism
Enzymes
Guanosine
Humanities and Social Sciences
Humans
Hydrogen-Ion Concentration
Hydrolysis
multidisciplinary
Nucleic Acid Conformation
Nucleotides
Oligonucleotides
Osmolar Concentration
RNA Cap Analogs - metabolism
RNA Caps - chemistry
RNA Caps - metabolism
RNA, Messenger - chemistry
RNA, Messenger - metabolism
Saccharomyces cerevisiae - enzymology
Saccharomyces cerevisiae Proteins - metabolism
Science
Science (multidisciplinary)
Sugar
Transcription
Yeast
title The yeast scavenger decapping enzyme DcpS and its application for in vitro RNA recapping
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