Shade tolerance in Swarnaprabha rice is associated with higher rate of panicle emergence and positively regulated by genes of ethylene and cytokinin pathway
This study identifies characteristics of seedling, mature plant phenotypes, changes at genetic and genomic level associated with Swarnaprabha (SP) rice grown under prolonged shade and compared with Nagina 22 (N22). Coleoptile length under low red/far-red was intermediate between that in dark and red...
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| description | This study identifies characteristics of seedling, mature plant phenotypes, changes at genetic and genomic level associated with Swarnaprabha (SP) rice grown under prolonged shade and compared with Nagina 22 (N22). Coleoptile length under low red/far-red was intermediate between that in dark and red light in a 7-days growth frame. Whereas, highest rootlet number was discriminating in seedlings grown for 28 days in hydroponics. In shade, SP and N22 both showed several tolerant mature plant phenotypes, except the panicle length, yield per plant and % grain filling, which were higher in SP. Percentage decrease in yield / plant in shade showed significant positive correlation with increase in NDVI, decrease in panicle length and % grain filling (p ≤ 0.01). Rate of panicle emergence in shade was higher in SP than N22. Expression patterns of
PHYTOCHROME INTERACTING FACTOR LIKE-13
and
PHYTOCHROME B
were contrasting in SP and N22 seedlings under continuous red or red/far-red. Microarray analysis revealed the up-regulation of most of the ethylene and cytokinin pathway genes in shade grown panicles of SP. Significant up-regulation of
ETHYLENE RESPONSE ELEMENT BINDING PROTEIN-2
,
MOTHER OF FLOWERING TIME 1
, and
SHORT PANICLE1
genes in shade grown panicles of SP could explain its sustainable higher yield in shade. |
| doi_str_mv | 10.1038/s41598-019-43096-8 |
| format | Article |
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PHYTOCHROME INTERACTING FACTOR LIKE-13
and
PHYTOCHROME B
were contrasting in SP and N22 seedlings under continuous red or red/far-red. Microarray analysis revealed the up-regulation of most of the ethylene and cytokinin pathway genes in shade grown panicles of SP. Significant up-regulation of
ETHYLENE RESPONSE ELEMENT BINDING PROTEIN-2
,
MOTHER OF FLOWERING TIME 1
, and
SHORT PANICLE1
genes in shade grown panicles of SP could explain its sustainable higher yield in shade.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-019-43096-8</identifier><identifier>PMID: 31048729</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>45 ; 45/61 ; 631/449/2661/2662 ; 631/449/2661/2665 ; Adaptation, Physiological ; Agricultural production ; Coleoptile ; Cytokinins ; Cytokinins - metabolism ; Ethylene ; Ethylenes - metabolism ; Flowering ; Gene Expression Regulation, Plant - radiation effects ; Genes, Plant ; Genotype & phenotype ; Grain ; Humanities and Social Sciences ; Hydroponics ; Light ; multidisciplinary ; Nitrogen - metabolism ; Oryza ; Oryza - physiology ; Phenotypes ; Phosphorus - metabolism ; Photosynthesis ; Phytochrome B ; Rice ; Science ; Science (multidisciplinary) ; Seedlings ; Shade ; Signal Transduction</subject><ispartof>Scientific reports, 2019-05, Vol.9 (1), p.6817, Article 6817</ispartof><rights>The Author(s) 2019</rights><rights>The Author(s) 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c478t-4423d257f789fb6b8364ed3bbda9a5866d4abea984b50a9bf707d8e638919b763</citedby><cites>FETCH-LOGICAL-c478t-4423d257f789fb6b8364ed3bbda9a5866d4abea984b50a9bf707d8e638919b763</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6497668/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6497668/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31048729$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Panigrahy, Madhusmita</creatorcontrib><creatorcontrib>Ranga, Aman</creatorcontrib><creatorcontrib>Das, Jyotirmayee</creatorcontrib><creatorcontrib>Panigrahi, Kishore C. S.</creatorcontrib><title>Shade tolerance in Swarnaprabha rice is associated with higher rate of panicle emergence and positively regulated by genes of ethylene and cytokinin pathway</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>This study identifies characteristics of seedling, mature plant phenotypes, changes at genetic and genomic level associated with Swarnaprabha (SP) rice grown under prolonged shade and compared with Nagina 22 (N22). Coleoptile length under low red/far-red was intermediate between that in dark and red light in a 7-days growth frame. Whereas, highest rootlet number was discriminating in seedlings grown for 28 days in hydroponics. In shade, SP and N22 both showed several tolerant mature plant phenotypes, except the panicle length, yield per plant and % grain filling, which were higher in SP. Percentage decrease in yield / plant in shade showed significant positive correlation with increase in NDVI, decrease in panicle length and % grain filling (p ≤ 0.01). Rate of panicle emergence in shade was higher in SP than N22. Expression patterns of
PHYTOCHROME INTERACTING FACTOR LIKE-13
and
PHYTOCHROME B
were contrasting in SP and N22 seedlings under continuous red or red/far-red. Microarray analysis revealed the up-regulation of most of the ethylene and cytokinin pathway genes in shade grown panicles of SP. Significant up-regulation of
ETHYLENE RESPONSE ELEMENT BINDING PROTEIN-2
,
MOTHER OF FLOWERING TIME 1
, and
SHORT PANICLE1
genes in shade grown panicles of SP could explain its sustainable higher yield in shade.</description><subject>45</subject><subject>45/61</subject><subject>631/449/2661/2662</subject><subject>631/449/2661/2665</subject><subject>Adaptation, Physiological</subject><subject>Agricultural production</subject><subject>Coleoptile</subject><subject>Cytokinins</subject><subject>Cytokinins - metabolism</subject><subject>Ethylene</subject><subject>Ethylenes - metabolism</subject><subject>Flowering</subject><subject>Gene Expression Regulation, Plant - radiation effects</subject><subject>Genes, Plant</subject><subject>Genotype & phenotype</subject><subject>Grain</subject><subject>Humanities and Social Sciences</subject><subject>Hydroponics</subject><subject>Light</subject><subject>multidisciplinary</subject><subject>Nitrogen - metabolism</subject><subject>Oryza</subject><subject>Oryza - physiology</subject><subject>Phenotypes</subject><subject>Phosphorus - metabolism</subject><subject>Photosynthesis</subject><subject>Phytochrome B</subject><subject>Rice</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Seedlings</subject><subject>Shade</subject><subject>Signal Transduction</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kc1u1TAQhSMEolXpC7BAllgHHNtx7A0SqviTKrEorK1xMklccuNg-_Yq78LD4txbStngje3xd86MfIriZUXfVJSrt1FUtVYlrXQpONWyVE-Kc0ZFXTLO2NNH57PiMsZbmlfNtKj08-KMV1Sohunz4tfNCB2S5CcMMLdI3ExuDhBmWALYEUhwWzESiNG3DhJ25ODSSEY3jBhIyBXie7LA7NoJCe4wDLgZwdyRxUeX3B1OKwk47Kej3K4kExg3GaZxnfLlSLdr8j_cnCdYII0HWF8Uz3qYIl7e7xfF948fvl19Lq-_fvpy9f66bEWjUikE4x2rm75RurfSKi4FdtzaDjTUSspOgEXQStiagrZ9Q5tOoeRKV9o2kl8U706-y97usGtxTgEmswS3g7AaD878-zK70Qz-zkihGylVNnh9bxD8zz3GZG79Pv_hFA1jldJSM71R7ES1wccYsH_oUFGzhWpOoZocqjmGajbRq8ezPUj-RJgBfgJifpoHDH97_8f2N5OdsYw</recordid><startdate>20190502</startdate><enddate>20190502</enddate><creator>Panigrahy, Madhusmita</creator><creator>Ranga, Aman</creator><creator>Das, Jyotirmayee</creator><creator>Panigrahi, Kishore C. 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S.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Shade tolerance in Swarnaprabha rice is associated with higher rate of panicle emergence and positively regulated by genes of ethylene and cytokinin pathway</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2019-05-02</date><risdate>2019</risdate><volume>9</volume><issue>1</issue><spage>6817</spage><pages>6817-</pages><artnum>6817</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>This study identifies characteristics of seedling, mature plant phenotypes, changes at genetic and genomic level associated with Swarnaprabha (SP) rice grown under prolonged shade and compared with Nagina 22 (N22). Coleoptile length under low red/far-red was intermediate between that in dark and red light in a 7-days growth frame. Whereas, highest rootlet number was discriminating in seedlings grown for 28 days in hydroponics. In shade, SP and N22 both showed several tolerant mature plant phenotypes, except the panicle length, yield per plant and % grain filling, which were higher in SP. Percentage decrease in yield / plant in shade showed significant positive correlation with increase in NDVI, decrease in panicle length and % grain filling (p ≤ 0.01). Rate of panicle emergence in shade was higher in SP than N22. Expression patterns of
PHYTOCHROME INTERACTING FACTOR LIKE-13
and
PHYTOCHROME B
were contrasting in SP and N22 seedlings under continuous red or red/far-red. Microarray analysis revealed the up-regulation of most of the ethylene and cytokinin pathway genes in shade grown panicles of SP. Significant up-regulation of
ETHYLENE RESPONSE ELEMENT BINDING PROTEIN-2
,
MOTHER OF FLOWERING TIME 1
, and
SHORT PANICLE1
genes in shade grown panicles of SP could explain its sustainable higher yield in shade.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>31048729</pmid><doi>10.1038/s41598-019-43096-8</doi><oa>free_for_read</oa></addata></record> |
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| subjects | 45 45/61 631/449/2661/2662 631/449/2661/2665 Adaptation, Physiological Agricultural production Coleoptile Cytokinins Cytokinins - metabolism Ethylene Ethylenes - metabolism Flowering Gene Expression Regulation, Plant - radiation effects Genes, Plant Genotype & phenotype Grain Humanities and Social Sciences Hydroponics Light multidisciplinary Nitrogen - metabolism Oryza Oryza - physiology Phenotypes Phosphorus - metabolism Photosynthesis Phytochrome B Rice Science Science (multidisciplinary) Seedlings Shade Signal Transduction |
| title | Shade tolerance in Swarnaprabha rice is associated with higher rate of panicle emergence and positively regulated by genes of ethylene and cytokinin pathway |
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