Phytanoyl-CoA 2-Hydroxylase-Interacting Protein-Like Gene Is a Therapeutic Target Gene for Glioblastoma Multiforme
Glioblastoma multiforme (GBM) is the most common primary CNS cancer and has a poor prognosis. This study searched for significant genes and the mechanisms involved in GBM. We used the Gene Expression Omnibus (GEO) to test the WHO normal and IV glioma database, used R tool to identify the significant...
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Veröffentlicht in: | Medical science monitor 2019-04, Vol.25, p.2583-2590 |
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description | Glioblastoma multiforme (GBM) is the most common primary CNS cancer and has a poor prognosis. This study searched for significant genes and the mechanisms involved in GBM. We used the Gene Expression Omnibus (GEO) to test the WHO normal and IV glioma database, used R tool to identify the significant gene, and finally, combined these with The Cancer Genome Atlas (TCGA) to verify the significant genes. Subsequently, we explored the biological mechanisms involved. Phytanoyl-CoA 2-hydroxylase-interacting protein-like gene (PHYHIPL) is downregulated in grade IV glioma (GBM). The downregulation of PHYHIPL in GBM is accompanied by poor overall survival in the TCGA database, which indicates that PHYHIPL is a protection gene in GBM development. Bioinformatics analysis shows that the poor prognosis with downregulated PHYHIPL may be the result of the TNF signaling pathway and the IL-17 signaling pathway, but good prognosis accompanied by upregulated PHYHIPL may be the result of retrograde endocannabinoid signaling and the cAMP signaling pathway. Protein-protein interactions (PPI) net indicated that PHYHIPL may play a vital role in cell metabolism, and we hypothesize that the downregulation mechanism may be the result of mutations of the ß-catenin gene and the endogenous siRNA, as shown in previous studies. PHYHIPL may be a target gene for the treatment and prognosis of GBM. |
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This study searched for significant genes and the mechanisms involved in GBM. We used the Gene Expression Omnibus (GEO) to test the WHO normal and IV glioma database, used R tool to identify the significant gene, and finally, combined these with The Cancer Genome Atlas (TCGA) to verify the significant genes. Subsequently, we explored the biological mechanisms involved. Phytanoyl-CoA 2-hydroxylase-interacting protein-like gene (PHYHIPL) is downregulated in grade IV glioma (GBM). The downregulation of PHYHIPL in GBM is accompanied by poor overall survival in the TCGA database, which indicates that PHYHIPL is a protection gene in GBM development. Bioinformatics analysis shows that the poor prognosis with downregulated PHYHIPL may be the result of the TNF signaling pathway and the IL-17 signaling pathway, but good prognosis accompanied by upregulated PHYHIPL may be the result of retrograde endocannabinoid signaling and the cAMP signaling pathway. Protein-protein interactions (PPI) net indicated that PHYHIPL may play a vital role in cell metabolism, and we hypothesize that the downregulation mechanism may be the result of mutations of the ß-catenin gene and the endogenous siRNA, as shown in previous studies. PHYHIPL may be a target gene for the treatment and prognosis of GBM.</description><identifier>ISSN: 1643-3750</identifier><identifier>ISSN: 1234-1010</identifier><identifier>EISSN: 1643-3750</identifier><identifier>DOI: 10.12659/MSM.913895</identifier><identifier>PMID: 30962415</identifier><language>eng</language><publisher>United States: International Scientific Literature, Inc</publisher><subject>Brain Neoplasms - genetics ; Brain Neoplasms - metabolism ; Coenzyme A - genetics ; Coenzyme A - metabolism ; Computational Biology - methods ; Databases, Genetic ; Gene Regulatory Networks - genetics ; Glioblastoma - genetics ; Glioblastoma - therapy ; Glioma - genetics ; Humans ; Hypothesis ; Intracellular Signaling Peptides and Proteins - genetics ; Mutation - genetics ; Nerve Tissue Proteins - metabolism ; Phytanic Acid - analogs & derivatives ; Phytanic Acid - metabolism ; Prognosis ; Signal Transduction</subject><ispartof>Medical science monitor, 2019-04, Vol.25, p.2583-2590</ispartof><rights>Med Sci Monit, 2019 2019</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c447t-f75bcce12764f78cc0b5a34c07353e560bcf5e249f8a56f339fe071f8120b8253</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6474294/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6474294/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30962415$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fu, HuangDe</creatorcontrib><creatorcontrib>Ge, Bin</creatorcontrib><creatorcontrib>Chen, DuanKai</creatorcontrib><creatorcontrib>Wu, YueQing</creatorcontrib><creatorcontrib>Luo, QiSheng</creatorcontrib><creatorcontrib>Li, XueYu</creatorcontrib><creatorcontrib>Zheng, ChuanHua</creatorcontrib><creatorcontrib>Tang, QianLi</creatorcontrib><title>Phytanoyl-CoA 2-Hydroxylase-Interacting Protein-Like Gene Is a Therapeutic Target Gene for Glioblastoma Multiforme</title><title>Medical science monitor</title><addtitle>Med Sci Monit</addtitle><description>Glioblastoma multiforme (GBM) is the most common primary CNS cancer and has a poor prognosis. This study searched for significant genes and the mechanisms involved in GBM. We used the Gene Expression Omnibus (GEO) to test the WHO normal and IV glioma database, used R tool to identify the significant gene, and finally, combined these with The Cancer Genome Atlas (TCGA) to verify the significant genes. Subsequently, we explored the biological mechanisms involved. Phytanoyl-CoA 2-hydroxylase-interacting protein-like gene (PHYHIPL) is downregulated in grade IV glioma (GBM). The downregulation of PHYHIPL in GBM is accompanied by poor overall survival in the TCGA database, which indicates that PHYHIPL is a protection gene in GBM development. Bioinformatics analysis shows that the poor prognosis with downregulated PHYHIPL may be the result of the TNF signaling pathway and the IL-17 signaling pathway, but good prognosis accompanied by upregulated PHYHIPL may be the result of retrograde endocannabinoid signaling and the cAMP signaling pathway. Protein-protein interactions (PPI) net indicated that PHYHIPL may play a vital role in cell metabolism, and we hypothesize that the downregulation mechanism may be the result of mutations of the ß-catenin gene and the endogenous siRNA, as shown in previous studies. PHYHIPL may be a target gene for the treatment and prognosis of GBM.</description><subject>Brain Neoplasms - genetics</subject><subject>Brain Neoplasms - metabolism</subject><subject>Coenzyme A - genetics</subject><subject>Coenzyme A - metabolism</subject><subject>Computational Biology - methods</subject><subject>Databases, Genetic</subject><subject>Gene Regulatory Networks - genetics</subject><subject>Glioblastoma - genetics</subject><subject>Glioblastoma - therapy</subject><subject>Glioma - genetics</subject><subject>Humans</subject><subject>Hypothesis</subject><subject>Intracellular Signaling Peptides and Proteins - genetics</subject><subject>Mutation - genetics</subject><subject>Nerve Tissue Proteins - metabolism</subject><subject>Phytanic Acid - analogs & derivatives</subject><subject>Phytanic Acid - metabolism</subject><subject>Prognosis</subject><subject>Signal Transduction</subject><issn>1643-3750</issn><issn>1234-1010</issn><issn>1643-3750</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkU1r3DAQhkVpaT7aU-5Fx0Jwom_bl0BYms3CLg10exayMtpValsbSS7xv4-TTUJymmHm4Z2BB6ETSs4oU7I-X_1ZndWUV7X8hA6pErzgpSSf3_UH6CilO0JYpYj8ig44qRUTVB6ieLMds-nD2BazcIlZcT3exvAwtiZBsegzRGOz7zf4JoYMvi-W_h_gOfSAFwkbvN5OxA6G7C1em7iBvF-6EPG89aGZgnLoDF4NbfbTtINv6IszbYLvL_UY_b36tZ5dF8vf88XscllYIcpcuFI21gJlpRKurKwljTRcWFJyyUEq0lgngYnaVUYqx3ntgJTUVZSRpmKSH6OLfe5uaDq4tdDnaFq9i74zcdTBeP1x0_ut3oT_WolSsFpMAT9fAmK4HyBl3flkoW1ND2FImjGiGBNcPaGne9TGkFIE93aGEv1sSU-W9N7SRP94_9kb-6qFPwLqjI7S</recordid><startdate>20190409</startdate><enddate>20190409</enddate><creator>Fu, HuangDe</creator><creator>Ge, Bin</creator><creator>Chen, DuanKai</creator><creator>Wu, YueQing</creator><creator>Luo, QiSheng</creator><creator>Li, XueYu</creator><creator>Zheng, ChuanHua</creator><creator>Tang, QianLi</creator><general>International Scientific Literature, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20190409</creationdate><title>Phytanoyl-CoA 2-Hydroxylase-Interacting Protein-Like Gene Is a Therapeutic Target Gene for Glioblastoma Multiforme</title><author>Fu, HuangDe ; Ge, Bin ; Chen, DuanKai ; Wu, YueQing ; Luo, QiSheng ; Li, XueYu ; Zheng, ChuanHua ; Tang, QianLi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c447t-f75bcce12764f78cc0b5a34c07353e560bcf5e249f8a56f339fe071f8120b8253</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Brain Neoplasms - genetics</topic><topic>Brain Neoplasms - metabolism</topic><topic>Coenzyme A - genetics</topic><topic>Coenzyme A - metabolism</topic><topic>Computational Biology - methods</topic><topic>Databases, Genetic</topic><topic>Gene Regulatory Networks - genetics</topic><topic>Glioblastoma - genetics</topic><topic>Glioblastoma - therapy</topic><topic>Glioma - genetics</topic><topic>Humans</topic><topic>Hypothesis</topic><topic>Intracellular Signaling Peptides and Proteins - genetics</topic><topic>Mutation - genetics</topic><topic>Nerve Tissue Proteins - metabolism</topic><topic>Phytanic Acid - analogs & derivatives</topic><topic>Phytanic Acid - metabolism</topic><topic>Prognosis</topic><topic>Signal Transduction</topic><toplevel>online_resources</toplevel><creatorcontrib>Fu, HuangDe</creatorcontrib><creatorcontrib>Ge, Bin</creatorcontrib><creatorcontrib>Chen, DuanKai</creatorcontrib><creatorcontrib>Wu, YueQing</creatorcontrib><creatorcontrib>Luo, QiSheng</creatorcontrib><creatorcontrib>Li, XueYu</creatorcontrib><creatorcontrib>Zheng, ChuanHua</creatorcontrib><creatorcontrib>Tang, QianLi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Medical science monitor</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fu, HuangDe</au><au>Ge, Bin</au><au>Chen, DuanKai</au><au>Wu, YueQing</au><au>Luo, QiSheng</au><au>Li, XueYu</au><au>Zheng, ChuanHua</au><au>Tang, QianLi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phytanoyl-CoA 2-Hydroxylase-Interacting Protein-Like Gene Is a Therapeutic Target Gene for Glioblastoma Multiforme</atitle><jtitle>Medical science monitor</jtitle><addtitle>Med Sci Monit</addtitle><date>2019-04-09</date><risdate>2019</risdate><volume>25</volume><spage>2583</spage><epage>2590</epage><pages>2583-2590</pages><issn>1643-3750</issn><issn>1234-1010</issn><eissn>1643-3750</eissn><abstract>Glioblastoma multiforme (GBM) is the most common primary CNS cancer and has a poor prognosis. This study searched for significant genes and the mechanisms involved in GBM. We used the Gene Expression Omnibus (GEO) to test the WHO normal and IV glioma database, used R tool to identify the significant gene, and finally, combined these with The Cancer Genome Atlas (TCGA) to verify the significant genes. Subsequently, we explored the biological mechanisms involved. Phytanoyl-CoA 2-hydroxylase-interacting protein-like gene (PHYHIPL) is downregulated in grade IV glioma (GBM). The downregulation of PHYHIPL in GBM is accompanied by poor overall survival in the TCGA database, which indicates that PHYHIPL is a protection gene in GBM development. Bioinformatics analysis shows that the poor prognosis with downregulated PHYHIPL may be the result of the TNF signaling pathway and the IL-17 signaling pathway, but good prognosis accompanied by upregulated PHYHIPL may be the result of retrograde endocannabinoid signaling and the cAMP signaling pathway. Protein-protein interactions (PPI) net indicated that PHYHIPL may play a vital role in cell metabolism, and we hypothesize that the downregulation mechanism may be the result of mutations of the ß-catenin gene and the endogenous siRNA, as shown in previous studies. PHYHIPL may be a target gene for the treatment and prognosis of GBM.</abstract><cop>United States</cop><pub>International Scientific Literature, Inc</pub><pmid>30962415</pmid><doi>10.12659/MSM.913895</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Brain Neoplasms - genetics Brain Neoplasms - metabolism Coenzyme A - genetics Coenzyme A - metabolism Computational Biology - methods Databases, Genetic Gene Regulatory Networks - genetics Glioblastoma - genetics Glioblastoma - therapy Glioma - genetics Humans Hypothesis Intracellular Signaling Peptides and Proteins - genetics Mutation - genetics Nerve Tissue Proteins - metabolism Phytanic Acid - analogs & derivatives Phytanic Acid - metabolism Prognosis Signal Transduction |
title | Phytanoyl-CoA 2-Hydroxylase-Interacting Protein-Like Gene Is a Therapeutic Target Gene for Glioblastoma Multiforme |
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