Phytanoyl-CoA 2-Hydroxylase-Interacting Protein-Like Gene Is a Therapeutic Target Gene for Glioblastoma Multiforme

Glioblastoma multiforme (GBM) is the most common primary CNS cancer and has a poor prognosis. This study searched for significant genes and the mechanisms involved in GBM. We used the Gene Expression Omnibus (GEO) to test the WHO normal and IV glioma database, used R tool to identify the significant...

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Veröffentlicht in:Medical science monitor 2019-04, Vol.25, p.2583-2590
Hauptverfasser: Fu, HuangDe, Ge, Bin, Chen, DuanKai, Wu, YueQing, Luo, QiSheng, Li, XueYu, Zheng, ChuanHua, Tang, QianLi
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container_title Medical science monitor
container_volume 25
creator Fu, HuangDe
Ge, Bin
Chen, DuanKai
Wu, YueQing
Luo, QiSheng
Li, XueYu
Zheng, ChuanHua
Tang, QianLi
description Glioblastoma multiforme (GBM) is the most common primary CNS cancer and has a poor prognosis. This study searched for significant genes and the mechanisms involved in GBM. We used the Gene Expression Omnibus (GEO) to test the WHO normal and IV glioma database, used R tool to identify the significant gene, and finally, combined these with The Cancer Genome Atlas (TCGA) to verify the significant genes. Subsequently, we explored the biological mechanisms involved. Phytanoyl-CoA 2-hydroxylase-interacting protein-like gene (PHYHIPL) is downregulated in grade IV glioma (GBM). The downregulation of PHYHIPL in GBM is accompanied by poor overall survival in the TCGA database, which indicates that PHYHIPL is a protection gene in GBM development. Bioinformatics analysis shows that the poor prognosis with downregulated PHYHIPL may be the result of the TNF signaling pathway and the IL-17 signaling pathway, but good prognosis accompanied by upregulated PHYHIPL may be the result of retrograde endocannabinoid signaling and the cAMP signaling pathway. Protein-protein interactions (PPI) net indicated that PHYHIPL may play a vital role in cell metabolism, and we hypothesize that the downregulation mechanism may be the result of mutations of the ß-catenin gene and the endogenous siRNA, as shown in previous studies. PHYHIPL may be a target gene for the treatment and prognosis of GBM.
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This study searched for significant genes and the mechanisms involved in GBM. We used the Gene Expression Omnibus (GEO) to test the WHO normal and IV glioma database, used R tool to identify the significant gene, and finally, combined these with The Cancer Genome Atlas (TCGA) to verify the significant genes. Subsequently, we explored the biological mechanisms involved. Phytanoyl-CoA 2-hydroxylase-interacting protein-like gene (PHYHIPL) is downregulated in grade IV glioma (GBM). The downregulation of PHYHIPL in GBM is accompanied by poor overall survival in the TCGA database, which indicates that PHYHIPL is a protection gene in GBM development. Bioinformatics analysis shows that the poor prognosis with downregulated PHYHIPL may be the result of the TNF signaling pathway and the IL-17 signaling pathway, but good prognosis accompanied by upregulated PHYHIPL may be the result of retrograde endocannabinoid signaling and the cAMP signaling pathway. Protein-protein interactions (PPI) net indicated that PHYHIPL may play a vital role in cell metabolism, and we hypothesize that the downregulation mechanism may be the result of mutations of the ß-catenin gene and the endogenous siRNA, as shown in previous studies. 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Protein-protein interactions (PPI) net indicated that PHYHIPL may play a vital role in cell metabolism, and we hypothesize that the downregulation mechanism may be the result of mutations of the ß-catenin gene and the endogenous siRNA, as shown in previous studies. PHYHIPL may be a target gene for the treatment and prognosis of GBM.</description><subject>Brain Neoplasms - genetics</subject><subject>Brain Neoplasms - metabolism</subject><subject>Coenzyme A - genetics</subject><subject>Coenzyme A - metabolism</subject><subject>Computational Biology - methods</subject><subject>Databases, Genetic</subject><subject>Gene Regulatory Networks - genetics</subject><subject>Glioblastoma - genetics</subject><subject>Glioblastoma - therapy</subject><subject>Glioma - genetics</subject><subject>Humans</subject><subject>Hypothesis</subject><subject>Intracellular Signaling Peptides and Proteins - genetics</subject><subject>Mutation - genetics</subject><subject>Nerve Tissue Proteins - metabolism</subject><subject>Phytanic Acid - analogs &amp; derivatives</subject><subject>Phytanic Acid - metabolism</subject><subject>Prognosis</subject><subject>Signal Transduction</subject><issn>1643-3750</issn><issn>1234-1010</issn><issn>1643-3750</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkU1r3DAQhkVpaT7aU-5Fx0Jwom_bl0BYms3CLg10exayMtpValsbSS7xv4-TTUJymmHm4Z2BB6ETSs4oU7I-X_1ZndWUV7X8hA6pErzgpSSf3_UH6CilO0JYpYj8ig44qRUTVB6ieLMds-nD2BazcIlZcT3exvAwtiZBsegzRGOz7zf4JoYMvi-W_h_gOfSAFwkbvN5OxA6G7C1em7iBvF-6EPG89aGZgnLoDF4NbfbTtINv6IszbYLvL_UY_b36tZ5dF8vf88XscllYIcpcuFI21gJlpRKurKwljTRcWFJyyUEq0lgngYnaVUYqx3ntgJTUVZSRpmKSH6OLfe5uaDq4tdDnaFq9i74zcdTBeP1x0_ut3oT_WolSsFpMAT9fAmK4HyBl3flkoW1ND2FImjGiGBNcPaGne9TGkFIE93aGEv1sSU-W9N7SRP94_9kb-6qFPwLqjI7S</recordid><startdate>20190409</startdate><enddate>20190409</enddate><creator>Fu, HuangDe</creator><creator>Ge, Bin</creator><creator>Chen, DuanKai</creator><creator>Wu, YueQing</creator><creator>Luo, QiSheng</creator><creator>Li, XueYu</creator><creator>Zheng, ChuanHua</creator><creator>Tang, QianLi</creator><general>International Scientific Literature, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20190409</creationdate><title>Phytanoyl-CoA 2-Hydroxylase-Interacting Protein-Like Gene Is a Therapeutic Target Gene for Glioblastoma Multiforme</title><author>Fu, HuangDe ; 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derivatives</topic><topic>Phytanic Acid - metabolism</topic><topic>Prognosis</topic><topic>Signal Transduction</topic><toplevel>online_resources</toplevel><creatorcontrib>Fu, HuangDe</creatorcontrib><creatorcontrib>Ge, Bin</creatorcontrib><creatorcontrib>Chen, DuanKai</creatorcontrib><creatorcontrib>Wu, YueQing</creatorcontrib><creatorcontrib>Luo, QiSheng</creatorcontrib><creatorcontrib>Li, XueYu</creatorcontrib><creatorcontrib>Zheng, ChuanHua</creatorcontrib><creatorcontrib>Tang, QianLi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Medical science monitor</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fu, HuangDe</au><au>Ge, Bin</au><au>Chen, DuanKai</au><au>Wu, YueQing</au><au>Luo, QiSheng</au><au>Li, XueYu</au><au>Zheng, ChuanHua</au><au>Tang, QianLi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phytanoyl-CoA 2-Hydroxylase-Interacting Protein-Like Gene Is a Therapeutic Target Gene for Glioblastoma Multiforme</atitle><jtitle>Medical science monitor</jtitle><addtitle>Med Sci Monit</addtitle><date>2019-04-09</date><risdate>2019</risdate><volume>25</volume><spage>2583</spage><epage>2590</epage><pages>2583-2590</pages><issn>1643-3750</issn><issn>1234-1010</issn><eissn>1643-3750</eissn><abstract>Glioblastoma multiforme (GBM) is the most common primary CNS cancer and has a poor prognosis. 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subjects Brain Neoplasms - genetics
Brain Neoplasms - metabolism
Coenzyme A - genetics
Coenzyme A - metabolism
Computational Biology - methods
Databases, Genetic
Gene Regulatory Networks - genetics
Glioblastoma - genetics
Glioblastoma - therapy
Glioma - genetics
Humans
Hypothesis
Intracellular Signaling Peptides and Proteins - genetics
Mutation - genetics
Nerve Tissue Proteins - metabolism
Phytanic Acid - analogs & derivatives
Phytanic Acid - metabolism
Prognosis
Signal Transduction
title Phytanoyl-CoA 2-Hydroxylase-Interacting Protein-Like Gene Is a Therapeutic Target Gene for Glioblastoma Multiforme
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