A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns

Sugars are critical for plant growth and development as suppliers of carbon and energy, as signal molecules, or as solute molecules for osmotic homeostasis. Monosaccharide transporter (MST) genes are involved in various processes of plant growth and development as well as in response to abiotic stre...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Genes 2019-03, Vol.10 (3), p.239
Hauptverfasser: Deng, Xiaolong, An, Baoguang, Zhong, Hua, Yang, Jing, Kong, Weilong, Li, Yangsheng
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue 3
container_start_page 239
container_title Genes
container_volume 10
creator Deng, Xiaolong
An, Baoguang
Zhong, Hua
Yang, Jing
Kong, Weilong
Li, Yangsheng
description Sugars are critical for plant growth and development as suppliers of carbon and energy, as signal molecules, or as solute molecules for osmotic homeostasis. Monosaccharide transporter (MST) genes are involved in various processes of plant growth and development as well as in response to abiotic stresses. However, the evolution and their roles of MST genes in growth and development and in coping with abiotic stresses in rice are poorly known. Here, we identified 64 MST genes in rice genome, which are classified into seven subfamilies: STP, PLT, AZT, ERD, pGlcT, INT, and XTPH. MST genes are not evenly distributed between chromosomes (Chrs) with a bias to Chr 3, 4, 7, and 11, which could be a result of duplication of fragments harboring MST genes. In total, 12 duplication events were found in the rice MST family, among which, two pairs were derived from fragmental duplications and ten pairs were from tandem duplications. The synonymous and nonsynonymous substitution rates of duplicate gene pairs demonstrated that the MST family was under a strong negative selection during the evolution process. Furthermore, a comprehensive expression analysis conducted in 11 different tissues, three abiotic stresses, five hormone treatments, and three sugar treatments revealed different expression patterns of MST genes and indicated diversified functions of them. Our results suggest that MST genes play important roles not only in various abiotic stresses but also in hormone and sugar responses. The present results will provide a vital insight into the functional divergence of the MST family in the future study.
doi_str_mv 10.3390/genes10030239
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_6470851</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2196522180</sourcerecordid><originalsourceid>FETCH-LOGICAL-c415t-54e14ee8f8351e936ba971ff66b7922833df7537b72b208277edde0fda46e5ad3</originalsourceid><addsrcrecordid>eNpdkc1vFCEYh4nR2Kb26NWQePEyyucAF5O6dtsm9SNaz4SZeWeXZgZWYDb2vy-mtWnlAuR9eF7gh9BrSt5zbsiHDQTIlBBOGDfP0CEjijdCMPn80foAHed8TeoQhBEiX6IDTrRRWqhDVE7w17iHCV-E7Dfbgn0oEa-X0Bcfg5vwZ7-HVPv0gOOIyxbwl59X-Kw2xms3--mmnsA_fC1_chkGHANexXmXYAvVuAd8-qducq42_N2VAinkV-jF6KYMx_fzEfq1Pr1anTeX384uVieXTS-oLI0UQAWAHjWXFAxvO2cUHce27ZRhTHM-jEpy1SnWMaKZUjAMQMbBiRakG_gR-njn3S3dDEMPoSQ32V3ys0s3Njpvn1aC39pN3NtWKKIlrYJ394IUfy-Qi5197mGaXIC4ZMuoaSVjVJOKvv0PvY5Lqj9YKSm0EEYLU6nmjupTzDnB-HAZSuzfSO2TSCv_5vELHuh_AfJbLTKdgw</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2548449849</pqid></control><display><type>article</type><title>A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns</title><source>MEDLINE</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central Open Access</source><source>MDPI - Multidisciplinary Digital Publishing Institute</source><source>PubMed Central</source><creator>Deng, Xiaolong ; An, Baoguang ; Zhong, Hua ; Yang, Jing ; Kong, Weilong ; Li, Yangsheng</creator><creatorcontrib>Deng, Xiaolong ; An, Baoguang ; Zhong, Hua ; Yang, Jing ; Kong, Weilong ; Li, Yangsheng</creatorcontrib><description>Sugars are critical for plant growth and development as suppliers of carbon and energy, as signal molecules, or as solute molecules for osmotic homeostasis. Monosaccharide transporter (MST) genes are involved in various processes of plant growth and development as well as in response to abiotic stresses. However, the evolution and their roles of MST genes in growth and development and in coping with abiotic stresses in rice are poorly known. Here, we identified 64 MST genes in rice genome, which are classified into seven subfamilies: STP, PLT, AZT, ERD, pGlcT, INT, and XTPH. MST genes are not evenly distributed between chromosomes (Chrs) with a bias to Chr 3, 4, 7, and 11, which could be a result of duplication of fragments harboring MST genes. In total, 12 duplication events were found in the rice MST family, among which, two pairs were derived from fragmental duplications and ten pairs were from tandem duplications. The synonymous and nonsynonymous substitution rates of duplicate gene pairs demonstrated that the MST family was under a strong negative selection during the evolution process. Furthermore, a comprehensive expression analysis conducted in 11 different tissues, three abiotic stresses, five hormone treatments, and three sugar treatments revealed different expression patterns of MST genes and indicated diversified functions of them. Our results suggest that MST genes play important roles not only in various abiotic stresses but also in hormone and sugar responses. The present results will provide a vital insight into the functional divergence of the MST family in the future study.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes10030239</identifier><identifier>PMID: 30897847</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Abiotic stress ; Chromosome Mapping ; Chromosomes ; Chromosomes, Plant - genetics ; Divergence ; Evolution, Molecular ; Evolutionary genetics ; Gene Expression Profiling - methods ; Gene Expression Regulation, Developmental ; Gene Expression Regulation, Plant ; Genes ; Genomes ; Glucose ; Homeostasis ; Monosaccharide Transport Proteins - genetics ; Monosaccharide Transport Proteins - metabolism ; Monosaccharides ; Multigene Family ; Negative selection ; Occupational Stress ; Oryza - genetics ; Oryza - growth &amp; development ; Oryza - metabolism ; Phylogenetics ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Proteins ; Rice ; Seeds ; Sucrose ; Tissue Distribution ; Zidovudine</subject><ispartof>Genes, 2019-03, Vol.10 (3), p.239</ispartof><rights>2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2019 by the authors. 2019</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c415t-54e14ee8f8351e936ba971ff66b7922833df7537b72b208277edde0fda46e5ad3</citedby><cites>FETCH-LOGICAL-c415t-54e14ee8f8351e936ba971ff66b7922833df7537b72b208277edde0fda46e5ad3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6470851/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6470851/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30897847$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Deng, Xiaolong</creatorcontrib><creatorcontrib>An, Baoguang</creatorcontrib><creatorcontrib>Zhong, Hua</creatorcontrib><creatorcontrib>Yang, Jing</creatorcontrib><creatorcontrib>Kong, Weilong</creatorcontrib><creatorcontrib>Li, Yangsheng</creatorcontrib><title>A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>Sugars are critical for plant growth and development as suppliers of carbon and energy, as signal molecules, or as solute molecules for osmotic homeostasis. Monosaccharide transporter (MST) genes are involved in various processes of plant growth and development as well as in response to abiotic stresses. However, the evolution and their roles of MST genes in growth and development and in coping with abiotic stresses in rice are poorly known. Here, we identified 64 MST genes in rice genome, which are classified into seven subfamilies: STP, PLT, AZT, ERD, pGlcT, INT, and XTPH. MST genes are not evenly distributed between chromosomes (Chrs) with a bias to Chr 3, 4, 7, and 11, which could be a result of duplication of fragments harboring MST genes. In total, 12 duplication events were found in the rice MST family, among which, two pairs were derived from fragmental duplications and ten pairs were from tandem duplications. The synonymous and nonsynonymous substitution rates of duplicate gene pairs demonstrated that the MST family was under a strong negative selection during the evolution process. Furthermore, a comprehensive expression analysis conducted in 11 different tissues, three abiotic stresses, five hormone treatments, and three sugar treatments revealed different expression patterns of MST genes and indicated diversified functions of them. Our results suggest that MST genes play important roles not only in various abiotic stresses but also in hormone and sugar responses. The present results will provide a vital insight into the functional divergence of the MST family in the future study.</description><subject>Abiotic stress</subject><subject>Chromosome Mapping</subject><subject>Chromosomes</subject><subject>Chromosomes, Plant - genetics</subject><subject>Divergence</subject><subject>Evolution, Molecular</subject><subject>Evolutionary genetics</subject><subject>Gene Expression Profiling - methods</subject><subject>Gene Expression Regulation, Developmental</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes</subject><subject>Genomes</subject><subject>Glucose</subject><subject>Homeostasis</subject><subject>Monosaccharide Transport Proteins - genetics</subject><subject>Monosaccharide Transport Proteins - metabolism</subject><subject>Monosaccharides</subject><subject>Multigene Family</subject><subject>Negative selection</subject><subject>Occupational Stress</subject><subject>Oryza - genetics</subject><subject>Oryza - growth &amp; development</subject><subject>Oryza - metabolism</subject><subject>Phylogenetics</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Proteins</subject><subject>Rice</subject><subject>Seeds</subject><subject>Sucrose</subject><subject>Tissue Distribution</subject><subject>Zidovudine</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNpdkc1vFCEYh4nR2Kb26NWQePEyyucAF5O6dtsm9SNaz4SZeWeXZgZWYDb2vy-mtWnlAuR9eF7gh9BrSt5zbsiHDQTIlBBOGDfP0CEjijdCMPn80foAHed8TeoQhBEiX6IDTrRRWqhDVE7w17iHCV-E7Dfbgn0oEa-X0Bcfg5vwZ7-HVPv0gOOIyxbwl59X-Kw2xms3--mmnsA_fC1_chkGHANexXmXYAvVuAd8-qducq42_N2VAinkV-jF6KYMx_fzEfq1Pr1anTeX384uVieXTS-oLI0UQAWAHjWXFAxvO2cUHce27ZRhTHM-jEpy1SnWMaKZUjAMQMbBiRakG_gR-njn3S3dDEMPoSQ32V3ys0s3Njpvn1aC39pN3NtWKKIlrYJ394IUfy-Qi5197mGaXIC4ZMuoaSVjVJOKvv0PvY5Lqj9YKSm0EEYLU6nmjupTzDnB-HAZSuzfSO2TSCv_5vELHuh_AfJbLTKdgw</recordid><startdate>20190320</startdate><enddate>20190320</enddate><creator>Deng, Xiaolong</creator><creator>An, Baoguang</creator><creator>Zhong, Hua</creator><creator>Yang, Jing</creator><creator>Kong, Weilong</creator><creator>Li, Yangsheng</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20190320</creationdate><title>A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns</title><author>Deng, Xiaolong ; An, Baoguang ; Zhong, Hua ; Yang, Jing ; Kong, Weilong ; Li, Yangsheng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c415t-54e14ee8f8351e936ba971ff66b7922833df7537b72b208277edde0fda46e5ad3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Abiotic stress</topic><topic>Chromosome Mapping</topic><topic>Chromosomes</topic><topic>Chromosomes, Plant - genetics</topic><topic>Divergence</topic><topic>Evolution, Molecular</topic><topic>Evolutionary genetics</topic><topic>Gene Expression Profiling - methods</topic><topic>Gene Expression Regulation, Developmental</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes</topic><topic>Genomes</topic><topic>Glucose</topic><topic>Homeostasis</topic><topic>Monosaccharide Transport Proteins - genetics</topic><topic>Monosaccharide Transport Proteins - metabolism</topic><topic>Monosaccharides</topic><topic>Multigene Family</topic><topic>Negative selection</topic><topic>Occupational Stress</topic><topic>Oryza - genetics</topic><topic>Oryza - growth &amp; development</topic><topic>Oryza - metabolism</topic><topic>Phylogenetics</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Proteins</topic><topic>Rice</topic><topic>Seeds</topic><topic>Sucrose</topic><topic>Tissue Distribution</topic><topic>Zidovudine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Deng, Xiaolong</creatorcontrib><creatorcontrib>An, Baoguang</creatorcontrib><creatorcontrib>Zhong, Hua</creatorcontrib><creatorcontrib>Yang, Jing</creatorcontrib><creatorcontrib>Kong, Weilong</creatorcontrib><creatorcontrib>Li, Yangsheng</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Deng, Xiaolong</au><au>An, Baoguang</au><au>Zhong, Hua</au><au>Yang, Jing</au><au>Kong, Weilong</au><au>Li, Yangsheng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2019-03-20</date><risdate>2019</risdate><volume>10</volume><issue>3</issue><spage>239</spage><pages>239-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>Sugars are critical for plant growth and development as suppliers of carbon and energy, as signal molecules, or as solute molecules for osmotic homeostasis. Monosaccharide transporter (MST) genes are involved in various processes of plant growth and development as well as in response to abiotic stresses. However, the evolution and their roles of MST genes in growth and development and in coping with abiotic stresses in rice are poorly known. Here, we identified 64 MST genes in rice genome, which are classified into seven subfamilies: STP, PLT, AZT, ERD, pGlcT, INT, and XTPH. MST genes are not evenly distributed between chromosomes (Chrs) with a bias to Chr 3, 4, 7, and 11, which could be a result of duplication of fragments harboring MST genes. In total, 12 duplication events were found in the rice MST family, among which, two pairs were derived from fragmental duplications and ten pairs were from tandem duplications. The synonymous and nonsynonymous substitution rates of duplicate gene pairs demonstrated that the MST family was under a strong negative selection during the evolution process. Furthermore, a comprehensive expression analysis conducted in 11 different tissues, three abiotic stresses, five hormone treatments, and three sugar treatments revealed different expression patterns of MST genes and indicated diversified functions of them. Our results suggest that MST genes play important roles not only in various abiotic stresses but also in hormone and sugar responses. The present results will provide a vital insight into the functional divergence of the MST family in the future study.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>30897847</pmid><doi>10.3390/genes10030239</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2073-4425
ispartof Genes, 2019-03, Vol.10 (3), p.239
issn 2073-4425
2073-4425
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_6470851
source MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central Open Access; MDPI - Multidisciplinary Digital Publishing Institute; PubMed Central
subjects Abiotic stress
Chromosome Mapping
Chromosomes
Chromosomes, Plant - genetics
Divergence
Evolution, Molecular
Evolutionary genetics
Gene Expression Profiling - methods
Gene Expression Regulation, Developmental
Gene Expression Regulation, Plant
Genes
Genomes
Glucose
Homeostasis
Monosaccharide Transport Proteins - genetics
Monosaccharide Transport Proteins - metabolism
Monosaccharides
Multigene Family
Negative selection
Occupational Stress
Oryza - genetics
Oryza - growth & development
Oryza - metabolism
Phylogenetics
Plant Proteins - genetics
Plant Proteins - metabolism
Proteins
Rice
Seeds
Sucrose
Tissue Distribution
Zidovudine
title A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T22%3A38%3A49IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20Novel%20Insight%20into%20Functional%20Divergence%20of%20the%20MST%20Gene%20Family%20in%20Rice%20Based%20on%20Comprehensive%20Expression%20Patterns&rft.jtitle=Genes&rft.au=Deng,%20Xiaolong&rft.date=2019-03-20&rft.volume=10&rft.issue=3&rft.spage=239&rft.pages=239-&rft.issn=2073-4425&rft.eissn=2073-4425&rft_id=info:doi/10.3390/genes10030239&rft_dat=%3Cproquest_pubme%3E2196522180%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2548449849&rft_id=info:pmid/30897847&rfr_iscdi=true