A Machine Learning Approach for the Identification of a Biomarker of Human Pain using fNIRS
Pain is a highly unpleasant sensory and emotional experience, and no objective diagnosis test exists to assess it. In clinical practice there are two main methods for the estimation of pain, a patient’s self-report and clinical judgement. However, these methods are highly subjective and the need of...
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description | Pain is a highly unpleasant sensory and emotional experience, and no objective diagnosis test exists to assess it. In clinical practice there are two main methods for the estimation of pain, a patient’s self-report and clinical judgement. However, these methods are highly subjective and the need of biomarkers to measure pain is important to improve pain management, reduce risk factors, and contribute to a more objective, valid, and reliable diagnosis. Therefore, in this study we propose the use of functional near-infrared spectroscopy (fNIRS) and machine learning for the identification of a possible biomarker of pain. We collected pain information from 18 volunteers using the thermal test of the quantitative sensory testing (QST) protocol, according to temperature level (cold and hot) and pain intensity (low and high). Feature extraction was completed in three different domains (time, frequency, and wavelet), and a total of 69 features were obtained. Feature selection was carried out according to three criteria, information gain (IG), joint mutual information (JMI), and Chi-squared (
χ
2
). The significance of each feature ranking was evaluated using three learning models separately, linear discriminant analysis (LDA), the K-nearest neighbour (K-NN) and support vector machines (SVM) using the linear and Gaussian and polynomial kernels. The results showed that the Gaussian SVM presented the highest accuracy (94.17%) using only 25 features to identify the four types of pain in our database. In addition, we propose the use of the top 13 features according to the JMI criteria, which exhibited an accuracy of 89.44%, as promising biomarker of pain. This study contributes to the idea of developing an objective assessment of pain and proposes a potential biomarker of human pain using fNIRS. |
doi_str_mv | 10.1038/s41598-019-42098-w |
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χ
2
). The significance of each feature ranking was evaluated using three learning models separately, linear discriminant analysis (LDA), the K-nearest neighbour (K-NN) and support vector machines (SVM) using the linear and Gaussian and polynomial kernels. The results showed that the Gaussian SVM presented the highest accuracy (94.17%) using only 25 features to identify the four types of pain in our database. In addition, we propose the use of the top 13 features according to the JMI criteria, which exhibited an accuracy of 89.44%, as promising biomarker of pain. This study contributes to the idea of developing an objective assessment of pain and proposes a potential biomarker of human pain using fNIRS.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-019-42098-w</identifier><identifier>PMID: 30948760</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>639/166/985 ; 692/53/2421 ; Adult ; Algorithms ; Artificial intelligence ; Biomarkers ; Biomarkers - analysis ; Diagnosis ; Discriminant Analysis ; Female ; Humanities and Social Sciences ; Humans ; Immunoglobulins ; Infrared spectroscopy ; Learning algorithms ; Machine Learning ; Male ; multidisciplinary ; Normal Distribution ; Pain ; Pain - classification ; Pain perception ; Risk factors ; Science ; Science (multidisciplinary) ; Spectroscopy, Near-Infrared - methods ; Support Vector Machine</subject><ispartof>Scientific reports, 2019-04, Vol.9 (1), p.5645-5645, Article 5645</ispartof><rights>The Author(s) 2019</rights><rights>The Author(s) 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c532t-2864d0d3a58caf1eaad6aeb0ec51c46da4097b3a879ace5cb7ea81d76f8d83aa3</citedby><cites>FETCH-LOGICAL-c532t-2864d0d3a58caf1eaad6aeb0ec51c46da4097b3a879ace5cb7ea81d76f8d83aa3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6449551/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6449551/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,865,886,27926,27927,41122,42191,51578,53793,53795</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30948760$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fernandez Rojas, Raul</creatorcontrib><creatorcontrib>Huang, Xu</creatorcontrib><creatorcontrib>Ou, Keng-Liang</creatorcontrib><title>A Machine Learning Approach for the Identification of a Biomarker of Human Pain using fNIRS</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Pain is a highly unpleasant sensory and emotional experience, and no objective diagnosis test exists to assess it. In clinical practice there are two main methods for the estimation of pain, a patient’s self-report and clinical judgement. However, these methods are highly subjective and the need of biomarkers to measure pain is important to improve pain management, reduce risk factors, and contribute to a more objective, valid, and reliable diagnosis. Therefore, in this study we propose the use of functional near-infrared spectroscopy (fNIRS) and machine learning for the identification of a possible biomarker of pain. We collected pain information from 18 volunteers using the thermal test of the quantitative sensory testing (QST) protocol, according to temperature level (cold and hot) and pain intensity (low and high). Feature extraction was completed in three different domains (time, frequency, and wavelet), and a total of 69 features were obtained. Feature selection was carried out according to three criteria, information gain (IG), joint mutual information (JMI), and Chi-squared (
χ
2
). The significance of each feature ranking was evaluated using three learning models separately, linear discriminant analysis (LDA), the K-nearest neighbour (K-NN) and support vector machines (SVM) using the linear and Gaussian and polynomial kernels. The results showed that the Gaussian SVM presented the highest accuracy (94.17%) using only 25 features to identify the four types of pain in our database. In addition, we propose the use of the top 13 features according to the JMI criteria, which exhibited an accuracy of 89.44%, as promising biomarker of pain. This study contributes to the idea of developing an objective assessment of pain and proposes a potential biomarker of human pain using fNIRS.</description><subject>639/166/985</subject><subject>692/53/2421</subject><subject>Adult</subject><subject>Algorithms</subject><subject>Artificial intelligence</subject><subject>Biomarkers</subject><subject>Biomarkers - analysis</subject><subject>Diagnosis</subject><subject>Discriminant Analysis</subject><subject>Female</subject><subject>Humanities and Social Sciences</subject><subject>Humans</subject><subject>Immunoglobulins</subject><subject>Infrared spectroscopy</subject><subject>Learning algorithms</subject><subject>Machine Learning</subject><subject>Male</subject><subject>multidisciplinary</subject><subject>Normal Distribution</subject><subject>Pain</subject><subject>Pain - classification</subject><subject>Pain perception</subject><subject>Risk factors</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Spectroscopy, Near-Infrared - methods</subject><subject>Support Vector Machine</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU1vEzEQhi0EolXpH-CALHHhssWfu_YFKVTQRgof4uPEwZp4ZxOXxA72LhX_HoeUUjjgi8eeZ17P-CXkMWdnnEnzvCiurWkYt40SrEbX98ixYEo3Qgpx_058RE5LuWJ1aWEVtw_JkWRWma5lx-TLjL4Bvw4R6QIhxxBXdLbb5VQv6ZAyHddI5z3GMQzBwxhSpGmgQF-GtIX8FfP-eDltIdL3ECKdyl5ieDv_8PEReTDApuDpzX5CPr9-9en8slm8u5ifzxaN11KMjTCt6lkvQRsPA0eAvgVcMvSae9X2oJjtlhJMZ8Gj9ssOwfC-awfTGwkgT8iLg-5uWm6x97XZDBu3y6F2-MMlCO7vTAxrt0rfXauU1ZpXgWc3Ajl9m7CMbhuKx80GIqapOFH_srXCSl3Rp_-gV2nKsY63pyQXmllRKXGgfE6lZBxum-HM7e1zB_tctc_9ss9d16Ind8e4LfltVgXkASg1FVeY_7z9H9mfR-Kmww</recordid><startdate>20190404</startdate><enddate>20190404</enddate><creator>Fernandez Rojas, Raul</creator><creator>Huang, Xu</creator><creator>Ou, Keng-Liang</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20190404</creationdate><title>A Machine Learning Approach for the Identification of a Biomarker of Human Pain using fNIRS</title><author>Fernandez Rojas, Raul ; 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In clinical practice there are two main methods for the estimation of pain, a patient’s self-report and clinical judgement. However, these methods are highly subjective and the need of biomarkers to measure pain is important to improve pain management, reduce risk factors, and contribute to a more objective, valid, and reliable diagnosis. Therefore, in this study we propose the use of functional near-infrared spectroscopy (fNIRS) and machine learning for the identification of a possible biomarker of pain. We collected pain information from 18 volunteers using the thermal test of the quantitative sensory testing (QST) protocol, according to temperature level (cold and hot) and pain intensity (low and high). Feature extraction was completed in three different domains (time, frequency, and wavelet), and a total of 69 features were obtained. Feature selection was carried out according to three criteria, information gain (IG), joint mutual information (JMI), and Chi-squared (
χ
2
). The significance of each feature ranking was evaluated using three learning models separately, linear discriminant analysis (LDA), the K-nearest neighbour (K-NN) and support vector machines (SVM) using the linear and Gaussian and polynomial kernels. The results showed that the Gaussian SVM presented the highest accuracy (94.17%) using only 25 features to identify the four types of pain in our database. In addition, we propose the use of the top 13 features according to the JMI criteria, which exhibited an accuracy of 89.44%, as promising biomarker of pain. This study contributes to the idea of developing an objective assessment of pain and proposes a potential biomarker of human pain using fNIRS.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>30948760</pmid><doi>10.1038/s41598-019-42098-w</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 639/166/985 692/53/2421 Adult Algorithms Artificial intelligence Biomarkers Biomarkers - analysis Diagnosis Discriminant Analysis Female Humanities and Social Sciences Humans Immunoglobulins Infrared spectroscopy Learning algorithms Machine Learning Male multidisciplinary Normal Distribution Pain Pain - classification Pain perception Risk factors Science Science (multidisciplinary) Spectroscopy, Near-Infrared - methods Support Vector Machine |
title | A Machine Learning Approach for the Identification of a Biomarker of Human Pain using fNIRS |
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