Efficiency measures the conversion of agonist binding energy into receptor conformational change

Receptors alternate between resting↔active conformations that bind agonists with low↔high affinity. Here, we define a new agonist attribute, energy efficiency (η), as the fraction of ligand-binding energy converted into the mechanical work of the activation conformational change. η depends only on t...

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Veröffentlicht in:The Journal of general physiology 2019-04, Vol.151 (4), p.465-477
Hauptverfasser: Nayak, Tapan K, Vij, Ridhima, Bruhova, Iva, Shandilya, Jayasha, Auerbach, Anthony
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container_issue 4
container_start_page 465
container_title The Journal of general physiology
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creator Nayak, Tapan K
Vij, Ridhima
Bruhova, Iva
Shandilya, Jayasha
Auerbach, Anthony
description Receptors alternate between resting↔active conformations that bind agonists with low↔high affinity. Here, we define a new agonist attribute, energy efficiency (η), as the fraction of ligand-binding energy converted into the mechanical work of the activation conformational change. η depends only on the resting/active agonist-binding energy ratio. In a plot of activation energy versus binding energy (an "efficiency" plot), the slope gives η and the y intercept gives the receptor's intrinsic activation energy (without agonists; ΔG ). We used single-channel electrophysiology to estimate η for eight different agonists and ΔG in human endplate acetylcholine receptors (AChRs). From published equilibrium constants, we also estimated η for agonists of K 1.1 (BK channels) and muscarinic, γ-aminobutyric acid, glutamate, glycine, and aryl-hydrocarbon receptors, and ΔG for all of these except K 1.1. Regarding AChRs, η is 48-56% for agonists related structurally to acetylcholine but is only ∼39% for agonists related to epibatidine; ΔG is 8.4 kcal/mol in adult and 9.6 kcal/mol in fetal receptors. Efficiency plots for all of the above receptors are approximately linear, with η values between 12% and 57% and ΔG values between 2 and 12 kcal/mol. Efficiency appears to be a general attribute of agonist action at receptor binding sites that is useful for understanding binding mechanisms, categorizing agonists, and estimating concentration-response relationships.
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Here, we define a new agonist attribute, energy efficiency (η), as the fraction of ligand-binding energy converted into the mechanical work of the activation conformational change. η depends only on the resting/active agonist-binding energy ratio. In a plot of activation energy versus binding energy (an "efficiency" plot), the slope gives η and the y intercept gives the receptor's intrinsic activation energy (without agonists; ΔG ). We used single-channel electrophysiology to estimate η for eight different agonists and ΔG in human endplate acetylcholine receptors (AChRs). From published equilibrium constants, we also estimated η for agonists of K 1.1 (BK channels) and muscarinic, γ-aminobutyric acid, glutamate, glycine, and aryl-hydrocarbon receptors, and ΔG for all of these except K 1.1. Regarding AChRs, η is 48-56% for agonists related structurally to acetylcholine but is only ∼39% for agonists related to epibatidine; ΔG is 8.4 kcal/mol in adult and 9.6 kcal/mol in fetal receptors. 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subjects Acetylcholine receptors (muscarinic)
Agonists
Binding sites
Efficiency
Electrophysiology
Energy
Epibatidine
Fetuses
Glycine
Potassium channels (calcium-gated)
Thermodynamics
title Efficiency measures the conversion of agonist binding energy into receptor conformational change
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