EpiRank: Modeling Bidirectional Disease Spread in Asymmetric Commuting Networks
Commuting network flows are generally asymmetrical, with commuting behaviors bi-directionally balanced between home and work locations, and with weekday commutes providing many opportunities for the spread of infectious diseases via direct and indirect physical contact. The authors use a Markov chai...
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description | Commuting network flows are generally asymmetrical, with commuting behaviors bi-directionally balanced between home and work locations, and with weekday commutes providing many opportunities for the spread of infectious diseases via direct and indirect physical contact. The authors use a Markov chain model and PageRank-like algorithm to construct a novel algorithm called EpiRank to measure infection risk in a spatially confined commuting network on Taiwan island. Data from the country’s 2000 census were used to map epidemic risk distribution as a commuting network function. A daytime parameter was used to integrate forward and backward movement in order to analyze daily commuting patterns. EpiRank algorithm results were tested by comparing calculations with actual disease distributions for the 2009 H1N1 influenza outbreak and enterovirus cases between 2000 and 2008. Results suggest that the bidirectional movement model outperformed models that considered forward or backward direction only in terms of capturing spatial epidemic risk distribution. EpiRank also outperformed models based on network indexes such as PageRank and HITS. According to a sensitivity analysis of the daytime parameter, the backward movement effect is more important than the forward movement effect for understanding a commuting network’s disease diffusion structure. Our evidence supports the use of EpiRank as an alternative network measure for analyzing disease diffusion in a commuting network. |
doi_str_mv | 10.1038/s41598-019-41719-8 |
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The authors use a Markov chain model and PageRank-like algorithm to construct a novel algorithm called EpiRank to measure infection risk in a spatially confined commuting network on Taiwan island. Data from the country’s 2000 census were used to map epidemic risk distribution as a commuting network function. A daytime parameter was used to integrate forward and backward movement in order to analyze daily commuting patterns. EpiRank algorithm results were tested by comparing calculations with actual disease distributions for the 2009 H1N1 influenza outbreak and enterovirus cases between 2000 and 2008. Results suggest that the bidirectional movement model outperformed models that considered forward or backward direction only in terms of capturing spatial epidemic risk distribution. EpiRank also outperformed models based on network indexes such as PageRank and HITS. According to a sensitivity analysis of the daytime parameter, the backward movement effect is more important than the forward movement effect for understanding a commuting network’s disease diffusion structure. Our evidence supports the use of EpiRank as an alternative network measure for analyzing disease diffusion in a commuting network.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-019-41719-8</identifier><identifier>PMID: 30931968</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>639/705/1042 ; 692/699 ; 704/844 ; Algorithms ; Commuting ; Computer Simulation ; Daytime ; Disease Outbreaks ; Disease spread ; Epidemics ; Humanities and Social Sciences ; Humans ; Infectious diseases ; Influenza ; Influenza A Virus, H1N1 Subtype - isolation & purification ; Influenza A Virus, H1N1 Subtype - physiology ; Influenza, Human - epidemiology ; Influenza, Human - transmission ; Influenza, Human - virology ; Markov Chains ; Mathematical models ; Models, Theoretical ; multidisciplinary ; Risk Factors ; Science ; Science (multidisciplinary) ; Sensitivity analysis ; Taiwan - epidemiology ; Transportation - methods ; Transportation - statistics & numerical data</subject><ispartof>Scientific reports, 2019-04, Vol.9 (1), p.5415-5415, Article 5415</ispartof><rights>The Author(s) 2019</rights><rights>This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). 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The authors use a Markov chain model and PageRank-like algorithm to construct a novel algorithm called EpiRank to measure infection risk in a spatially confined commuting network on Taiwan island. Data from the country’s 2000 census were used to map epidemic risk distribution as a commuting network function. A daytime parameter was used to integrate forward and backward movement in order to analyze daily commuting patterns. EpiRank algorithm results were tested by comparing calculations with actual disease distributions for the 2009 H1N1 influenza outbreak and enterovirus cases between 2000 and 2008. Results suggest that the bidirectional movement model outperformed models that considered forward or backward direction only in terms of capturing spatial epidemic risk distribution. EpiRank also outperformed models based on network indexes such as PageRank and HITS. According to a sensitivity analysis of the daytime parameter, the backward movement effect is more important than the forward movement effect for understanding a commuting network’s disease diffusion structure. Our evidence supports the use of EpiRank as an alternative network measure for analyzing disease diffusion in a commuting network.</description><subject>639/705/1042</subject><subject>692/699</subject><subject>704/844</subject><subject>Algorithms</subject><subject>Commuting</subject><subject>Computer Simulation</subject><subject>Daytime</subject><subject>Disease Outbreaks</subject><subject>Disease spread</subject><subject>Epidemics</subject><subject>Humanities and Social Sciences</subject><subject>Humans</subject><subject>Infectious diseases</subject><subject>Influenza</subject><subject>Influenza A Virus, H1N1 Subtype - isolation & purification</subject><subject>Influenza A Virus, H1N1 Subtype - physiology</subject><subject>Influenza, Human - epidemiology</subject><subject>Influenza, Human - transmission</subject><subject>Influenza, Human - virology</subject><subject>Markov Chains</subject><subject>Mathematical models</subject><subject>Models, Theoretical</subject><subject>multidisciplinary</subject><subject>Risk Factors</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Sensitivity analysis</subject><subject>Taiwan - 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isolation & purification</topic><topic>Influenza A Virus, H1N1 Subtype - physiology</topic><topic>Influenza, Human - epidemiology</topic><topic>Influenza, Human - transmission</topic><topic>Influenza, Human - virology</topic><topic>Markov Chains</topic><topic>Mathematical models</topic><topic>Models, Theoretical</topic><topic>multidisciplinary</topic><topic>Risk Factors</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Sensitivity analysis</topic><topic>Taiwan - epidemiology</topic><topic>Transportation - methods</topic><topic>Transportation - statistics & numerical data</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Huang, Chung-Yuan</creatorcontrib><creatorcontrib>Chin, Wei-Chien-Benny</creatorcontrib><creatorcontrib>Wen, Tzai-Hung</creatorcontrib><creatorcontrib>Fu, Yu-Hsiang</creatorcontrib><creatorcontrib>Tsai, Yu-Shiuan</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Huang, Chung-Yuan</au><au>Chin, Wei-Chien-Benny</au><au>Wen, Tzai-Hung</au><au>Fu, Yu-Hsiang</au><au>Tsai, Yu-Shiuan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>EpiRank: Modeling Bidirectional Disease Spread in Asymmetric Commuting Networks</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2019-04-01</date><risdate>2019</risdate><volume>9</volume><issue>1</issue><spage>5415</spage><epage>5415</epage><pages>5415-5415</pages><artnum>5415</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Commuting network flows are generally asymmetrical, with commuting behaviors bi-directionally balanced between home and work locations, and with weekday commutes providing many opportunities for the spread of infectious diseases via direct and indirect physical contact. The authors use a Markov chain model and PageRank-like algorithm to construct a novel algorithm called EpiRank to measure infection risk in a spatially confined commuting network on Taiwan island. Data from the country’s 2000 census were used to map epidemic risk distribution as a commuting network function. A daytime parameter was used to integrate forward and backward movement in order to analyze daily commuting patterns. EpiRank algorithm results were tested by comparing calculations with actual disease distributions for the 2009 H1N1 influenza outbreak and enterovirus cases between 2000 and 2008. Results suggest that the bidirectional movement model outperformed models that considered forward or backward direction only in terms of capturing spatial epidemic risk distribution. EpiRank also outperformed models based on network indexes such as PageRank and HITS. According to a sensitivity analysis of the daytime parameter, the backward movement effect is more important than the forward movement effect for understanding a commuting network’s disease diffusion structure. Our evidence supports the use of EpiRank as an alternative network measure for analyzing disease diffusion in a commuting network.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>30931968</pmid><doi>10.1038/s41598-019-41719-8</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-7215-3303</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 639/705/1042 692/699 704/844 Algorithms Commuting Computer Simulation Daytime Disease Outbreaks Disease spread Epidemics Humanities and Social Sciences Humans Infectious diseases Influenza Influenza A Virus, H1N1 Subtype - isolation & purification Influenza A Virus, H1N1 Subtype - physiology Influenza, Human - epidemiology Influenza, Human - transmission Influenza, Human - virology Markov Chains Mathematical models Models, Theoretical multidisciplinary Risk Factors Science Science (multidisciplinary) Sensitivity analysis Taiwan - epidemiology Transportation - methods Transportation - statistics & numerical data |
title | EpiRank: Modeling Bidirectional Disease Spread in Asymmetric Commuting Networks |
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