Enhancement of tomogram interpretability using the locked self-rotation function

[Display omitted] •Self-rotation function can be used to find orientations of particles in tomograms.•Once the orientations have been determined the symmetry-averaged maps can be produced.•The symmetry-averaged maps may be helpful to reject particles that are outliers.•Finally, the inter-particle av...

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Veröffentlicht in:Journal of structural biology 2019-03, Vol.205 (3), p.53-58
Hauptverfasser: Fokine, Andrei, Khare, Baldeep, Sun, Yingyuan, Rossmann, Michael G.
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container_end_page 58
container_issue 3
container_start_page 53
container_title Journal of structural biology
container_volume 205
creator Fokine, Andrei
Khare, Baldeep
Sun, Yingyuan
Rossmann, Michael G.
description [Display omitted] •Self-rotation function can be used to find orientations of particles in tomograms.•Once the orientations have been determined the symmetry-averaged maps can be produced.•The symmetry-averaged maps may be helpful to reject particles that are outliers.•Finally, the inter-particle averaged map can be calculated to improve interpretability. The interpretation of cryo-electron tomograms of macromolecular complexes can be difficult because of the large amount of noise and because of the missing wedge effect. Here it is shown how the presence of rotational symmetry in a sample can be utilized to enhance the quality of a tomographic analysis. The orientation of symmetry axes in a sub-tomogram can be determined using a locked self-rotation function. Given this knowledge, the sub-tomogram density can then be averaged to improve its interpretability. Sub-tomograms of the icosahedral bacteriophage phiX174 are used to demonstrate the procedure.
doi_str_mv 10.1016/j.jsb.2019.01.006
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The interpretation of cryo-electron tomograms of macromolecular complexes can be difficult because of the large amount of noise and because of the missing wedge effect. Here it is shown how the presence of rotational symmetry in a sample can be utilized to enhance the quality of a tomographic analysis. The orientation of symmetry axes in a sub-tomogram can be determined using a locked self-rotation function. Given this knowledge, the sub-tomogram density can then be averaged to improve its interpretability. 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subjects Bacteriophage phi X 174 - ultrastructure
Capsid - ultrastructure
Cryo-electron tomography
Cryoelectron Microscopy - methods
Electron Microscope Tomography - methods
Image Processing, Computer-Assisted - statistics & numerical data
Locked self-rotation function
Macromolecular complexes
Point group symmetry
Rotation
Virus structure
title Enhancement of tomogram interpretability using the locked self-rotation function
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