To Fix or Not To Fix: Controls on Free-Living Nitrogen Fixation in the Rhizosphere
Free-living nitrogen fixation (FLNF) in the rhizosphere, or N fixation by heterotrophic bacteria living on/near root surfaces, is ubiquitous and a significant source of N in some terrestrial systems. FLNF is also of interest in crop production as an alternative to chemical fertilizer, potentially re...
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description | Free-living nitrogen fixation (FLNF) in the rhizosphere, or N fixation by heterotrophic bacteria living on/near root surfaces, is ubiquitous and a significant source of N in some terrestrial systems. FLNF is also of interest in crop production as an alternative to chemical fertilizer, potentially reducing production costs and ameliorating negative environmental impacts of fertilizer N additions. Despite this interest, a mechanistic understanding of controls (e.g., carbon, oxygen, nitrogen, and nutrient availability) on FLNF in the rhizosphere is lacking but necessary. FLNF is distinct from and occurs under more diverse and dynamic conditions than symbiotic N fixation; therefore, predicting FLNF rates and understanding controls on FLNF has proven difficult. This has led to large gaps in our understanding of FLNF, and studies aimed at identifying controls on FLNF are needed. Here, we provide a mechanistic overview of FLNF, including how various controls may influence FLNF in the rhizosphere in comparison with symbiotic N fixation occurring in plant nodules where environmental conditions are moderated by the plant. We apply this knowledge to a real-world example, the bioenergy crop switchgrass (
), to provide context of how FLNF may function in a managed system. We also highlight future challenges to assessing FLNF and understanding how FLNF functions in the environment and significantly contributes to plant N availability and productivity. |
doi_str_mv | 10.1128/AEM.02546-18 |
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), to provide context of how FLNF may function in a managed system. We also highlight future challenges to assessing FLNF and understanding how FLNF functions in the environment and significantly contributes to plant N availability and productivity.</description><identifier>ISSN: 0099-2240</identifier><identifier>EISSN: 1098-5336</identifier><identifier>DOI: 10.1128/AEM.02546-18</identifier><identifier>PMID: 30658971</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>Agricultural economics ; Agricultural production ; Bacteria - classification ; Bacteria - genetics ; Bacteria - isolation & purification ; Bacteria - metabolism ; BASIC BIOLOGICAL SCIENCES ; Crop production ; Crops ; diazotrophs ; Environmental conditions ; environmental controls ; Environmental impact ; Fertilizers ; Free-living nitrogen fixation ; Heterotrophic bacteria ; Minireview ; Nitrogen ; Nitrogen Fixation ; Nodules ; Nutrient availability ; Organic chemistry ; Panicum - microbiology ; Panicum - physiology ; Panicum virgatum ; Predictive control ; Production costs ; Renewable energy ; Rhizosphere ; rhizosphere-inhabiting microbes ; Soil Microbiology ; Symbiosis ; Terrestrial environments</subject><ispartof>Applied and environmental microbiology, 2019-03, Vol.85 (6)</ispartof><rights>Copyright © 2019 American Society for Microbiology.</rights><rights>Copyright American Society for Microbiology Mar 2019</rights><rights>Copyright © 2019 American Society for Microbiology. 2019 American Society for Microbiology</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c482t-93f9bf4886276db9e6b53b4568c9935b4e3694410d86966097c08a90700620733</citedby><cites>FETCH-LOGICAL-c482t-93f9bf4886276db9e6b53b4568c9935b4e3694410d86966097c08a90700620733</cites><orcidid>0000-0002-8484-3827 ; 0000-0002-4274-8928 ; 0000-0003-0514-6503 ; 0000-0001-6728-4499 ; 0000000167284499 ; 0000000305146503 ; 0000000284843827 ; 0000000242748928</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6414387/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6414387/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,3188,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30658971$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/servlets/purl/1579523$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><contributor>Cann, Isaac</contributor><creatorcontrib>Smercina, Darian N</creatorcontrib><creatorcontrib>Evans, Sarah E</creatorcontrib><creatorcontrib>Friesen, Maren L</creatorcontrib><creatorcontrib>Tiemann, Lisa K</creatorcontrib><creatorcontrib>Michigan State Univ., East Lansing, MI (United States)</creatorcontrib><creatorcontrib>Great Lakes Bioenergy Research Center</creatorcontrib><title>To Fix or Not To Fix: Controls on Free-Living Nitrogen Fixation in the Rhizosphere</title><title>Applied and environmental microbiology</title><addtitle>Appl Environ Microbiol</addtitle><description>Free-living nitrogen fixation (FLNF) in the rhizosphere, or N fixation by heterotrophic bacteria living on/near root surfaces, is ubiquitous and a significant source of N in some terrestrial systems. FLNF is also of interest in crop production as an alternative to chemical fertilizer, potentially reducing production costs and ameliorating negative environmental impacts of fertilizer N additions. Despite this interest, a mechanistic understanding of controls (e.g., carbon, oxygen, nitrogen, and nutrient availability) on FLNF in the rhizosphere is lacking but necessary. FLNF is distinct from and occurs under more diverse and dynamic conditions than symbiotic N fixation; therefore, predicting FLNF rates and understanding controls on FLNF has proven difficult. This has led to large gaps in our understanding of FLNF, and studies aimed at identifying controls on FLNF are needed. Here, we provide a mechanistic overview of FLNF, including how various controls may influence FLNF in the rhizosphere in comparison with symbiotic N fixation occurring in plant nodules where environmental conditions are moderated by the plant. We apply this knowledge to a real-world example, the bioenergy crop switchgrass (
), to provide context of how FLNF may function in a managed system. We also highlight future challenges to assessing FLNF and understanding how FLNF functions in the environment and significantly contributes to plant N availability and productivity.</description><subject>Agricultural economics</subject><subject>Agricultural production</subject><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Bacteria - isolation & purification</subject><subject>Bacteria - metabolism</subject><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>Crop production</subject><subject>Crops</subject><subject>diazotrophs</subject><subject>Environmental conditions</subject><subject>environmental controls</subject><subject>Environmental impact</subject><subject>Fertilizers</subject><subject>Free-living nitrogen fixation</subject><subject>Heterotrophic bacteria</subject><subject>Minireview</subject><subject>Nitrogen</subject><subject>Nitrogen Fixation</subject><subject>Nodules</subject><subject>Nutrient availability</subject><subject>Organic chemistry</subject><subject>Panicum - microbiology</subject><subject>Panicum - physiology</subject><subject>Panicum virgatum</subject><subject>Predictive control</subject><subject>Production costs</subject><subject>Renewable energy</subject><subject>Rhizosphere</subject><subject>rhizosphere-inhabiting microbes</subject><subject>Soil Microbiology</subject><subject>Symbiosis</subject><subject>Terrestrial environments</subject><issn>0099-2240</issn><issn>1098-5336</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkU1vEzEQhi0EoqFw44wsuHBgy_jb5oBURQ0ghSJV5WztOk7W1cYOtlMBvx6HlAo4jWbm0TsfL0LPCZwRQvXb84vPZ0AFlx3RD9CMgNGdYEw-RDMAYzpKOZygJ6XcAAAHqR-jEwZSaKPIDF1dJ7wI33HK-DJVfMze4XmKNaep4BTxInvfLcNtiBt8GVp54-OB6mto3RBxHT2-GsPPVHajz_4perTup-Kf3cVT9HVxcT3_2C2_fPg0P192jmtaO8PWZlhzrSVVcjUYLwfBBi6kdsYwMXDPpOGcwEpLIyUY5UD3BhSApKAYO0Xvj7q7_bD1K-fbyv1kdzls-_zDpj7YfzsxjHaTbq3khDOtmsDLo0AqNdjiQvVudClG76olQhlBD1Ne303J6dvel2q3oTg_TX30aV8sJcowpQgTDX31H3qT9jm2H1hKiaTtHEIb9eZIuZxKyX59vzEBe3DUNkftb0ct0Q1_8feV9_AfC9kv8iqYSg</recordid><startdate>20190315</startdate><enddate>20190315</enddate><creator>Smercina, Darian N</creator><creator>Evans, Sarah E</creator><creator>Friesen, Maren L</creator><creator>Tiemann, Lisa K</creator><general>American Society for Microbiology</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope><scope>OIOZB</scope><scope>OTOTI</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-8484-3827</orcidid><orcidid>https://orcid.org/0000-0002-4274-8928</orcidid><orcidid>https://orcid.org/0000-0003-0514-6503</orcidid><orcidid>https://orcid.org/0000-0001-6728-4499</orcidid><orcidid>https://orcid.org/0000000167284499</orcidid><orcidid>https://orcid.org/0000000305146503</orcidid><orcidid>https://orcid.org/0000000284843827</orcidid><orcidid>https://orcid.org/0000000242748928</orcidid></search><sort><creationdate>20190315</creationdate><title>To Fix or Not To Fix: Controls on Free-Living Nitrogen Fixation in the Rhizosphere</title><author>Smercina, Darian N ; 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FLNF is also of interest in crop production as an alternative to chemical fertilizer, potentially reducing production costs and ameliorating negative environmental impacts of fertilizer N additions. Despite this interest, a mechanistic understanding of controls (e.g., carbon, oxygen, nitrogen, and nutrient availability) on FLNF in the rhizosphere is lacking but necessary. FLNF is distinct from and occurs under more diverse and dynamic conditions than symbiotic N fixation; therefore, predicting FLNF rates and understanding controls on FLNF has proven difficult. This has led to large gaps in our understanding of FLNF, and studies aimed at identifying controls on FLNF are needed. Here, we provide a mechanistic overview of FLNF, including how various controls may influence FLNF in the rhizosphere in comparison with symbiotic N fixation occurring in plant nodules where environmental conditions are moderated by the plant. We apply this knowledge to a real-world example, the bioenergy crop switchgrass (
), to provide context of how FLNF may function in a managed system. We also highlight future challenges to assessing FLNF and understanding how FLNF functions in the environment and significantly contributes to plant N availability and productivity.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>30658971</pmid><doi>10.1128/AEM.02546-18</doi><orcidid>https://orcid.org/0000-0002-8484-3827</orcidid><orcidid>https://orcid.org/0000-0002-4274-8928</orcidid><orcidid>https://orcid.org/0000-0003-0514-6503</orcidid><orcidid>https://orcid.org/0000-0001-6728-4499</orcidid><orcidid>https://orcid.org/0000000167284499</orcidid><orcidid>https://orcid.org/0000000305146503</orcidid><orcidid>https://orcid.org/0000000284843827</orcidid><orcidid>https://orcid.org/0000000242748928</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Agricultural economics Agricultural production Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Bacteria - metabolism BASIC BIOLOGICAL SCIENCES Crop production Crops diazotrophs Environmental conditions environmental controls Environmental impact Fertilizers Free-living nitrogen fixation Heterotrophic bacteria Minireview Nitrogen Nitrogen Fixation Nodules Nutrient availability Organic chemistry Panicum - microbiology Panicum - physiology Panicum virgatum Predictive control Production costs Renewable energy Rhizosphere rhizosphere-inhabiting microbes Soil Microbiology Symbiosis Terrestrial environments |
title | To Fix or Not To Fix: Controls on Free-Living Nitrogen Fixation in the Rhizosphere |
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