Temporal stability and assignment power of adaptively divergent genomic regions between herring (Clupea harengus) seasonal spawning aggregations
Atlantic herring (Clupea harengus), a vital ecosystem component and target of the largest Northwest Atlantic pelagic fishery, undergo seasonal spawning migrations that result in elusive sympatric population structure. Herring spawn mostly in fall or spring, and genomic differentiation was recently d...
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| Veröffentlicht in: | Ecology and evolution 2019-01, Vol.9 (1), p.500-510 |
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| creator | Kerr, Quentin Fuentes‐Pardo, Angela P. Kho, James McDermid, Jenni L. Ruzzante, Daniel E. |
| description | Atlantic herring (Clupea harengus), a vital ecosystem component and target of the largest Northwest Atlantic pelagic fishery, undergo seasonal spawning migrations that result in elusive sympatric population structure. Herring spawn mostly in fall or spring, and genomic differentiation was recently detected between these groups. Here we used a subset of this differentiation, 66 single nucleotide polymorphisms (SNPs) to analyze the temporal dynamics of this local adaptation and the applicability of SNP subsets in stock assessment. We showed remarkable temporal stability of genomic differentiation corresponding to spawning season, between samples taken a decade apart (2005 N = 90 vs. 2014 N = 71) in the Gulf of St. Lawrence, and new evidence of limited interbreeding between spawning components. We also examined an understudied and overexploited herring population in Bras d'Or lake (N = 97); using highly reduced SNP panels (NSNPs > 6), we verified little‐known sympatric spawning populations within this unique inland sea. These results describe consistent local adaptation, arising from asynchronous reproduction in a migratory and dynamic marine species. Our research demonstrates the efficiency and precision of SNP‐based assessments of sympatric subpopulations; and indeed, this temporally stable local adaptation underlines the importance of such fine‐scale management practices.
Herring spawn mostly in fall or spring, and genomic differentiation was recently detected between these groups. Here, we used a subset of this differentiation, 66 single nucleotide polymorphisms (SNPs) to analyze the temporal dynamics of this local adaptation and the applicability of SNP subsets in stock assessment. We showed remarkable temporal stability of this genomic differentiation between samples taken a decade apart (2005 N = 90 vs. 2014 N = 71) in the Gulf of St. Lawrence, alongside new evidence of limited interbreeding. |
| doi_str_mv | 10.1002/ece3.4768 |
| format | Article |
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Herring spawn mostly in fall or spring, and genomic differentiation was recently detected between these groups. Here, we used a subset of this differentiation, 66 single nucleotide polymorphisms (SNPs) to analyze the temporal dynamics of this local adaptation and the applicability of SNP subsets in stock assessment. We showed remarkable temporal stability of this genomic differentiation between samples taken a decade apart (2005 N = 90 vs. 2014 N = 71) in the Gulf of St. Lawrence, alongside new evidence of limited interbreeding.</description><identifier>ISSN: 2045-7758</identifier><identifier>EISSN: 2045-7758</identifier><identifier>DOI: 10.1002/ece3.4768</identifier><identifier>PMID: 30680131</identifier><language>eng</language><publisher>England: John Wiley & Sons, Inc</publisher><subject>Adaptation ; adaptive divergence ; Clupea harengus ; Differentiation ; Divergence ; Ecosystems ; Fish ; Fish populations ; Fisheries ; management ; Migratory species ; Original Research ; population genomics ; Population structure ; Reproduction (biology) ; Single-nucleotide polymorphism ; SNP panel ; Spawning ; Spawning migrations ; Spawning populations ; Stability analysis ; Stock assessment ; Subpopulations ; Sympatric populations ; temporal stability</subject><ispartof>Ecology and evolution, 2019-01, Vol.9 (1), p.500-510</ispartof><rights>2018 The Authors. published by John Wiley & Sons Ltd.</rights><rights>2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4438-49fc023ed2d8e8061f663f5521f2ed3cc4dfd320a038648c8343b4c44723a9fe3</citedby><cites>FETCH-LOGICAL-c4438-49fc023ed2d8e8061f663f5521f2ed3cc4dfd320a038648c8343b4c44723a9fe3</cites><orcidid>0000-0002-8536-8335 ; 0000-0002-5734-9030</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6342187/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6342187/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,1411,11541,27901,27902,45550,45551,46027,46451,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30680131$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kerr, Quentin</creatorcontrib><creatorcontrib>Fuentes‐Pardo, Angela P.</creatorcontrib><creatorcontrib>Kho, James</creatorcontrib><creatorcontrib>McDermid, Jenni L.</creatorcontrib><creatorcontrib>Ruzzante, Daniel E.</creatorcontrib><title>Temporal stability and assignment power of adaptively divergent genomic regions between herring (Clupea harengus) seasonal spawning aggregations</title><title>Ecology and evolution</title><addtitle>Ecol Evol</addtitle><description>Atlantic herring (Clupea harengus), a vital ecosystem component and target of the largest Northwest Atlantic pelagic fishery, undergo seasonal spawning migrations that result in elusive sympatric population structure. Herring spawn mostly in fall or spring, and genomic differentiation was recently detected between these groups. Here we used a subset of this differentiation, 66 single nucleotide polymorphisms (SNPs) to analyze the temporal dynamics of this local adaptation and the applicability of SNP subsets in stock assessment. We showed remarkable temporal stability of genomic differentiation corresponding to spawning season, between samples taken a decade apart (2005 N = 90 vs. 2014 N = 71) in the Gulf of St. Lawrence, and new evidence of limited interbreeding between spawning components. We also examined an understudied and overexploited herring population in Bras d'Or lake (N = 97); using highly reduced SNP panels (NSNPs > 6), we verified little‐known sympatric spawning populations within this unique inland sea. These results describe consistent local adaptation, arising from asynchronous reproduction in a migratory and dynamic marine species. Our research demonstrates the efficiency and precision of SNP‐based assessments of sympatric subpopulations; and indeed, this temporally stable local adaptation underlines the importance of such fine‐scale management practices.
Herring spawn mostly in fall or spring, and genomic differentiation was recently detected between these groups. Here, we used a subset of this differentiation, 66 single nucleotide polymorphisms (SNPs) to analyze the temporal dynamics of this local adaptation and the applicability of SNP subsets in stock assessment. We showed remarkable temporal stability of this genomic differentiation between samples taken a decade apart (2005 N = 90 vs. 2014 N = 71) in the Gulf of St. Lawrence, alongside new evidence of limited interbreeding.</description><subject>Adaptation</subject><subject>adaptive divergence</subject><subject>Clupea harengus</subject><subject>Differentiation</subject><subject>Divergence</subject><subject>Ecosystems</subject><subject>Fish</subject><subject>Fish populations</subject><subject>Fisheries</subject><subject>management</subject><subject>Migratory species</subject><subject>Original Research</subject><subject>population genomics</subject><subject>Population structure</subject><subject>Reproduction (biology)</subject><subject>Single-nucleotide polymorphism</subject><subject>SNP panel</subject><subject>Spawning</subject><subject>Spawning migrations</subject><subject>Spawning populations</subject><subject>Stability analysis</subject><subject>Stock assessment</subject><subject>Subpopulations</subject><subject>Sympatric populations</subject><subject>temporal stability</subject><issn>2045-7758</issn><issn>2045-7758</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>BENPR</sourceid><recordid>eNp1kc9q3DAQxkVpaUKaQ1-gCHpJDpvonyX5UijLNikEeknPQiuPvQq25Ep2ln2LPnLlbhrSQnXQCOY334zmQ-g9JVeUEHYNDviVUFK_QqeMiGqlVKVfv3ifoPOcH0g5kjBB1Ft0wonUhHJ6in7ewzDGZHucJ7v1vZ8O2IYG25x9FwYIEx7jHhKOLbaNHSf_CP0BNyWkbsmWKw7e4QSdjyHjLUx7gIB3kJIPHb5Y9_MIFu9sgtDN-RJnsDmGpeNo92FhbNeVcjstAu_Qm9b2Gc6f4hn6_mVzv75d3X27-br-fLdyQnC9EnXrCOPQsEaDJpK2UvK2qhhtGTTcOdG0DWfEEq6l0E5zwbei1CrGbd0CP0OfjrrjvB2gceUvZQtmTH6w6WCi9ebvTPA708VHI7lgVKsicPEkkOKPGfJkBp8d9L0NEOdsGFW14EqouqAf_0Ef4pzKChZK1kzWileFujxSLsWcE7TPw1BiFqvNYrVZrC7sh5fTP5N_jC3A9RHY-x4O_1cym_WG_5b8BYBxtl8</recordid><startdate>201901</startdate><enddate>201901</enddate><creator>Kerr, Quentin</creator><creator>Fuentes‐Pardo, Angela P.</creator><creator>Kho, James</creator><creator>McDermid, Jenni L.</creator><creator>Ruzzante, Daniel E.</creator><general>John Wiley & Sons, Inc</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PHGZM</scope><scope>PHGZT</scope><scope>PIMPY</scope><scope>PKEHL</scope><scope>PQEST</scope><scope>PQGLB</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-8536-8335</orcidid><orcidid>https://orcid.org/0000-0002-5734-9030</orcidid></search><sort><creationdate>201901</creationdate><title>Temporal stability and assignment power of adaptively divergent genomic regions between herring (Clupea harengus) seasonal spawning aggregations</title><author>Kerr, Quentin ; 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Herring spawn mostly in fall or spring, and genomic differentiation was recently detected between these groups. Here we used a subset of this differentiation, 66 single nucleotide polymorphisms (SNPs) to analyze the temporal dynamics of this local adaptation and the applicability of SNP subsets in stock assessment. We showed remarkable temporal stability of genomic differentiation corresponding to spawning season, between samples taken a decade apart (2005 N = 90 vs. 2014 N = 71) in the Gulf of St. Lawrence, and new evidence of limited interbreeding between spawning components. We also examined an understudied and overexploited herring population in Bras d'Or lake (N = 97); using highly reduced SNP panels (NSNPs > 6), we verified little‐known sympatric spawning populations within this unique inland sea. These results describe consistent local adaptation, arising from asynchronous reproduction in a migratory and dynamic marine species. Our research demonstrates the efficiency and precision of SNP‐based assessments of sympatric subpopulations; and indeed, this temporally stable local adaptation underlines the importance of such fine‐scale management practices.
Herring spawn mostly in fall or spring, and genomic differentiation was recently detected between these groups. Here, we used a subset of this differentiation, 66 single nucleotide polymorphisms (SNPs) to analyze the temporal dynamics of this local adaptation and the applicability of SNP subsets in stock assessment. We showed remarkable temporal stability of this genomic differentiation between samples taken a decade apart (2005 N = 90 vs. 2014 N = 71) in the Gulf of St. Lawrence, alongside new evidence of limited interbreeding.</abstract><cop>England</cop><pub>John Wiley & Sons, Inc</pub><pmid>30680131</pmid><doi>10.1002/ece3.4768</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-8536-8335</orcidid><orcidid>https://orcid.org/0000-0002-5734-9030</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Adaptation adaptive divergence Clupea harengus Differentiation Divergence Ecosystems Fish Fish populations Fisheries management Migratory species Original Research population genomics Population structure Reproduction (biology) Single-nucleotide polymorphism SNP panel Spawning Spawning migrations Spawning populations Stability analysis Stock assessment Subpopulations Sympatric populations temporal stability |
| title | Temporal stability and assignment power of adaptively divergent genomic regions between herring (Clupea harengus) seasonal spawning aggregations |
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