On the catalytic effect of water in the intramolecular Diels–Alder reaction of quinone systems: a theoretical study
The mechanism of the intramolecular Diels-Alder (IMDA) reaction of benzoquinone 1, in the absence and in the presence of three water molecules, 1w, has been studied by means of density functional theory (DFT) methods, using the M05-2X and B3LYP functionals for exploration of the potential energy sur...
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Veröffentlicht in: | Molecules (Basel, Switzerland) Switzerland), 2012-11, Vol.17 (11), p.13687-13703 |
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description | The mechanism of the intramolecular Diels-Alder (IMDA) reaction of benzoquinone 1, in the absence and in the presence of three water molecules, 1w, has been studied by means of density functional theory (DFT) methods, using the M05-2X and B3LYP functionals for exploration of the potential energy surface (PES). The energy and geometrical results obtained are complemented with a population analysis using the NBO method, and an analysis based on the global, local and group electrophilicity and nucleophilicity indices. Both implicit and explicit solvation emphasize the increase of the polarity of the reaction and the reduction of activation free energies associated with the transition states (TSs) of this IMDA process. These results are reinforced by the analysis of the reactivity indices derived from the conceptual DFT, which show that the increase of the electrophilicity of the quinone framework by the hydrogen-bond formation correctly explains the high polar character of this intramolecular process. Large polarization at the TSs promoted by hydrogen-bonds and implicit solvation by water together with a high electrophilicity-nucleophilicity difference consistently explains the catalytic effects of water molecules. |
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The energy and geometrical results obtained are complemented with a population analysis using the NBO method, and an analysis based on the global, local and group electrophilicity and nucleophilicity indices. Both implicit and explicit solvation emphasize the increase of the polarity of the reaction and the reduction of activation free energies associated with the transition states (TSs) of this IMDA process. These results are reinforced by the analysis of the reactivity indices derived from the conceptual DFT, which show that the increase of the electrophilicity of the quinone framework by the hydrogen-bond formation correctly explains the high polar character of this intramolecular process. Large polarization at the TSs promoted by hydrogen-bonds and implicit solvation by water together with a high electrophilicity-nucleophilicity difference consistently explains the catalytic effects of water molecules.</description><identifier>ISSN: 1420-3049</identifier><identifier>EISSN: 1420-3049</identifier><identifier>DOI: 10.3390/molecules171113687</identifier><identifier>PMID: 23169266</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Algorithms ; Catalysis ; Computer Simulation ; Cycloaddition Reaction ; Diterpenes - chemical synthesis ; Energy ; Hydrogen ; Hydrogen Bonding ; Models, Chemical ; Models, Molecular ; Molecular Conformation ; Natural products ; Quantum Theory ; Quinones - chemistry ; Solvents ; Thermodynamics ; Water - chemistry</subject><ispartof>Molecules (Basel, Switzerland), 2012-11, Vol.17 (11), p.13687-13703</ispartof><rights>Copyright MDPI AG 2012</rights><rights>2012 by the authors. 2012</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c430t-6f565d9c47bf25eaf2376f4f48a1b7dcbd0b92b30114dcfefaf41aff330bcb043</citedby><cites>FETCH-LOGICAL-c430t-6f565d9c47bf25eaf2376f4f48a1b7dcbd0b92b30114dcfefaf41aff330bcb043</cites><orcidid>0000-0002-2023-0108</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6268198/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6268198/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,861,882,27905,27906,53772,53774</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23169266$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Soto-Delgado, Jorge</creatorcontrib><creatorcontrib>Aizman, Arie</creatorcontrib><creatorcontrib>Contreras, Renato</creatorcontrib><creatorcontrib>Domingo, Luis R</creatorcontrib><title>On the catalytic effect of water in the intramolecular Diels–Alder reaction of quinone systems: a theoretical study</title><title>Molecules (Basel, Switzerland)</title><addtitle>Molecules</addtitle><description>The mechanism of the intramolecular Diels-Alder (IMDA) reaction of benzoquinone 1, in the absence and in the presence of three water molecules, 1w, has been studied by means of density functional theory (DFT) methods, using the M05-2X and B3LYP functionals for exploration of the potential energy surface (PES). The energy and geometrical results obtained are complemented with a population analysis using the NBO method, and an analysis based on the global, local and group electrophilicity and nucleophilicity indices. Both implicit and explicit solvation emphasize the increase of the polarity of the reaction and the reduction of activation free energies associated with the transition states (TSs) of this IMDA process. These results are reinforced by the analysis of the reactivity indices derived from the conceptual DFT, which show that the increase of the electrophilicity of the quinone framework by the hydrogen-bond formation correctly explains the high polar character of this intramolecular process. Large polarization at the TSs promoted by hydrogen-bonds and implicit solvation by water together with a high electrophilicity-nucleophilicity difference consistently explains the catalytic effects of water molecules.</description><subject>Algorithms</subject><subject>Catalysis</subject><subject>Computer Simulation</subject><subject>Cycloaddition Reaction</subject><subject>Diterpenes - chemical synthesis</subject><subject>Energy</subject><subject>Hydrogen</subject><subject>Hydrogen Bonding</subject><subject>Models, Chemical</subject><subject>Models, Molecular</subject><subject>Molecular Conformation</subject><subject>Natural products</subject><subject>Quantum Theory</subject><subject>Quinones - chemistry</subject><subject>Solvents</subject><subject>Thermodynamics</subject><subject>Water - chemistry</subject><issn>1420-3049</issn><issn>1420-3049</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><recordid>eNplkU1uFDEQhS0EIj9wARbIEptsBly2291mgRQl4UeKlA2sLbe7TBy524ntBs0ud8gNc5L0aIYowMol-Xuv6ukR8gbYeyE0-zCmiG6OWKAFAKG69hnZB8nZSjCpnz-Z98hBKVeMcZDQvCR7XIDSXKl9Ml9MtF4idbbauK7BUfQeXaXJ09-2YqZhC4SpZrvbaDM9DRjL_e3dcRwWJqN1NaRpo7qZw5QmpGVdKo7lI7Ubfcq4mNtIS52H9SvywttY8PXuPSQ_Pp99P_m6Or_48u3k-HzlpGB1pXyjmkE72faeN2g9F63y0svOQt8Orh9Yr3kvGIAcnEdvvQTrvRCsdz2T4pB82vpez_2Ig8NNiGiucxhtXptkg_n7ZwqX5mf6ZRRXHehuMTjaGeR0M2OpZgzFYYx2wjQXA9ApDVJovaDv_kGv0pynJZ6BRoDmHZPNQvEt5XIqJaN_PAaY2bRq_m91Eb19GuNR8qdG8QC1mKSn</recordid><startdate>20121120</startdate><enddate>20121120</enddate><creator>Soto-Delgado, Jorge</creator><creator>Aizman, Arie</creator><creator>Contreras, Renato</creator><creator>Domingo, Luis R</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-2023-0108</orcidid></search><sort><creationdate>20121120</creationdate><title>On the catalytic effect of water in the intramolecular Diels–Alder reaction of quinone systems: a theoretical study</title><author>Soto-Delgado, Jorge ; 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The energy and geometrical results obtained are complemented with a population analysis using the NBO method, and an analysis based on the global, local and group electrophilicity and nucleophilicity indices. Both implicit and explicit solvation emphasize the increase of the polarity of the reaction and the reduction of activation free energies associated with the transition states (TSs) of this IMDA process. These results are reinforced by the analysis of the reactivity indices derived from the conceptual DFT, which show that the increase of the electrophilicity of the quinone framework by the hydrogen-bond formation correctly explains the high polar character of this intramolecular process. 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subjects | Algorithms Catalysis Computer Simulation Cycloaddition Reaction Diterpenes - chemical synthesis Energy Hydrogen Hydrogen Bonding Models, Chemical Models, Molecular Molecular Conformation Natural products Quantum Theory Quinones - chemistry Solvents Thermodynamics Water - chemistry |
title | On the catalytic effect of water in the intramolecular Diels–Alder reaction of quinone systems: a theoretical study |
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