Large-scale conformational changes and redistribution of surface negative charge upon sugar binding dictate the fidelity of phosphorylation in Vibrio cholerae fructokinase
Fructokinase (FRK) catalyzes the first step of fructose metabolism i.e., D-fructose to D-fructose-6-phosphate (F6P), however, the mechanistic insights of this reaction are elusive yet. Here we demonstrate that the putative Vibrio cholerae fructokinase ( Vc FRK) exhibit strong fructose-6-kinase activ...
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description | Fructokinase (FRK) catalyzes the first step of fructose metabolism i.e., D-fructose to D-fructose-6-phosphate (F6P), however, the mechanistic insights of this reaction are elusive yet. Here we demonstrate that the putative
Vibrio cholerae
fructokinase (
Vc
FRK) exhibit strong fructose-6-kinase activity allosterically modulated by K
+
/Cs
+
. We have determined the crystal structures of apo
-Vc
FRK and its complex with fructose, fructose-ADP-Ca
2+
, fructose-ADP-Ca
2+
-BeF
3
−
. Collectively, we propose the catalytic mechanism and allosteric activation of
Vc
FRK in atomistic details explaining why K
+
/Cs
+
are better activator than Na
+
. Structural results suggest that apo
Vc
FRK allows entry of fructose in the active site, sequester it through several conserved H-bonds and attains a closed form through large scale conformational changes. A double mutant (H108C/T261C-
Vc
FRK), that arrests the closed form but unable to reopen for F6P release, is catalytically impotent highlighting the essentiality of this conformational change. Negative charge accumulation around ATP upon fructose binding, is presumed to redirect the γ-phosphate towards fructose for efficient phosphotransfer. Reduced phosphotransfer rate of the mutants E205Q and E110Q supports this view. Atomic resolution structure of
Vc
FRK-fructose-ADP-Ca
2+
-BeF
3
−
, reported first time for any sugar kinase, suggests that BeF
3
−
moiety alongwith R176, Ca
2+
and ‘anion hole’ limit the conformational space for γ-phosphate favoring in-line phospho-transfer. |
doi_str_mv | 10.1038/s41598-018-35236-3 |
format | Article |
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Vibrio cholerae
fructokinase (
Vc
FRK) exhibit strong fructose-6-kinase activity allosterically modulated by K
+
/Cs
+
. We have determined the crystal structures of apo
-Vc
FRK and its complex with fructose, fructose-ADP-Ca
2+
, fructose-ADP-Ca
2+
-BeF
3
−
. Collectively, we propose the catalytic mechanism and allosteric activation of
Vc
FRK in atomistic details explaining why K
+
/Cs
+
are better activator than Na
+
. Structural results suggest that apo
Vc
FRK allows entry of fructose in the active site, sequester it through several conserved H-bonds and attains a closed form through large scale conformational changes. A double mutant (H108C/T261C-
Vc
FRK), that arrests the closed form but unable to reopen for F6P release, is catalytically impotent highlighting the essentiality of this conformational change. Negative charge accumulation around ATP upon fructose binding, is presumed to redirect the γ-phosphate towards fructose for efficient phosphotransfer. Reduced phosphotransfer rate of the mutants E205Q and E110Q supports this view. Atomic resolution structure of
Vc
FRK-fructose-ADP-Ca
2+
-BeF
3
−
, reported first time for any sugar kinase, suggests that BeF
3
−
moiety alongwith R176, Ca
2+
and ‘anion hole’ limit the conformational space for γ-phosphate favoring in-line phospho-transfer.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-018-35236-3</identifier><identifier>PMID: 30446722</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/535/1266 ; 631/57 ; Adenosine diphosphate ; Allosteric properties ; Bacteria ; Binding sites ; Calcium ; Catalysis ; Crystal structure ; Fructokinase ; Fructose ; Fructose-6-phosphate ; Humanities and Social Sciences ; Kinases ; Metabolism ; multidisciplinary ; Phosphorylation ; Potassium ; Science ; Science (multidisciplinary) ; Sugar ; Surface charge ; Vibrio cholerae</subject><ispartof>Scientific reports, 2018-11, Vol.8 (1), p.16925-13, Article 16925</ispartof><rights>The Author(s) 2018</rights><rights>2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c511t-ac821f081efcdf72bb40246ca63d4a82fbdc059f26a62cf4214da3a4e2dc26d63</citedby><cites>FETCH-LOGICAL-c511t-ac821f081efcdf72bb40246ca63d4a82fbdc059f26a62cf4214da3a4e2dc26d63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6240065/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6240065/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30446722$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Paul, Rakhi</creatorcontrib><creatorcontrib>Chatterjee, Shramana</creatorcontrib><creatorcontrib>Nath, Seema</creatorcontrib><creatorcontrib>Sen, Udayaditya</creatorcontrib><title>Large-scale conformational changes and redistribution of surface negative charge upon sugar binding dictate the fidelity of phosphorylation in Vibrio cholerae fructokinase</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Fructokinase (FRK) catalyzes the first step of fructose metabolism i.e., D-fructose to D-fructose-6-phosphate (F6P), however, the mechanistic insights of this reaction are elusive yet. Here we demonstrate that the putative
Vibrio cholerae
fructokinase (
Vc
FRK) exhibit strong fructose-6-kinase activity allosterically modulated by K
+
/Cs
+
. We have determined the crystal structures of apo
-Vc
FRK and its complex with fructose, fructose-ADP-Ca
2+
, fructose-ADP-Ca
2+
-BeF
3
−
. Collectively, we propose the catalytic mechanism and allosteric activation of
Vc
FRK in atomistic details explaining why K
+
/Cs
+
are better activator than Na
+
. Structural results suggest that apo
Vc
FRK allows entry of fructose in the active site, sequester it through several conserved H-bonds and attains a closed form through large scale conformational changes. A double mutant (H108C/T261C-
Vc
FRK), that arrests the closed form but unable to reopen for F6P release, is catalytically impotent highlighting the essentiality of this conformational change. Negative charge accumulation around ATP upon fructose binding, is presumed to redirect the γ-phosphate towards fructose for efficient phosphotransfer. Reduced phosphotransfer rate of the mutants E205Q and E110Q supports this view. Atomic resolution structure of
Vc
FRK-fructose-ADP-Ca
2+
-BeF
3
−
, reported first time for any sugar kinase, suggests that BeF
3
−
moiety alongwith R176, Ca
2+
and ‘anion hole’ limit the conformational space for γ-phosphate favoring in-line phospho-transfer.</description><subject>631/535/1266</subject><subject>631/57</subject><subject>Adenosine diphosphate</subject><subject>Allosteric properties</subject><subject>Bacteria</subject><subject>Binding sites</subject><subject>Calcium</subject><subject>Catalysis</subject><subject>Crystal structure</subject><subject>Fructokinase</subject><subject>Fructose</subject><subject>Fructose-6-phosphate</subject><subject>Humanities and Social Sciences</subject><subject>Kinases</subject><subject>Metabolism</subject><subject>multidisciplinary</subject><subject>Phosphorylation</subject><subject>Potassium</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Sugar</subject><subject>Surface charge</subject><subject>Vibrio cholerae</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>BENPR</sourceid><recordid>eNp9ks2KFDEUhQtRnGGcF3AhATduSpObVLp6I8gw_kCDG3UbbiU33RmrkzapGuhn8iVNd4_j6MJASOB899z8nKZ5LvhrwWX_pijRLfuWi76VHUjdykfNOXDVtSABHj_YnzWXpdzwOjpYKrF82pxJrpReAJw3P1eY19QWiyMxm6JPeYtTSBFHZjcY11QYRscyuVCmHIb5ILLkWZmzR0ss0roW3NIBr1Zs3lW9zGvMbAjRhbhmLtgJJ2LThpgPjsYw7Q8Wu00qdeb9eGzJQmTfwpBDql5ppIwVz7Od0vcQsdCz5onHsdDl3XrRfH1__eXqY7v6_OHT1btVazshphZtD8LzXpC3zi9gGBQHpS1q6RT24Adnebf0oFGD9QqEcihRETgL2ml50bw9-e7mYUvOUpwyjmaXwxbz3iQM5m8lho1Zp1ujQXGuu2rw6s4gpx8zlclsQ7E0jhgpzcWAkJ0A0P2ioi__QW_SnOvrHykFPaieVwpOlM2plEz-_jCCm0MczCkOpsbBHONgZC168fAa9yW_P78C8gSUKtWfzn96_8f2F-fIxk4</recordid><startdate>20181116</startdate><enddate>20181116</enddate><creator>Paul, Rakhi</creator><creator>Chatterjee, Shramana</creator><creator>Nath, Seema</creator><creator>Sen, Udayaditya</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20181116</creationdate><title>Large-scale conformational changes and redistribution of surface negative charge upon sugar binding dictate the fidelity of phosphorylation in Vibrio cholerae fructokinase</title><author>Paul, Rakhi ; Chatterjee, Shramana ; Nath, Seema ; Sen, Udayaditya</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c511t-ac821f081efcdf72bb40246ca63d4a82fbdc059f26a62cf4214da3a4e2dc26d63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>631/535/1266</topic><topic>631/57</topic><topic>Adenosine diphosphate</topic><topic>Allosteric properties</topic><topic>Bacteria</topic><topic>Binding sites</topic><topic>Calcium</topic><topic>Catalysis</topic><topic>Crystal structure</topic><topic>Fructokinase</topic><topic>Fructose</topic><topic>Fructose-6-phosphate</topic><topic>Humanities and Social Sciences</topic><topic>Kinases</topic><topic>Metabolism</topic><topic>multidisciplinary</topic><topic>Phosphorylation</topic><topic>Potassium</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Sugar</topic><topic>Surface charge</topic><topic>Vibrio cholerae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Paul, Rakhi</creatorcontrib><creatorcontrib>Chatterjee, Shramana</creatorcontrib><creatorcontrib>Nath, Seema</creatorcontrib><creatorcontrib>Sen, Udayaditya</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Paul, Rakhi</au><au>Chatterjee, Shramana</au><au>Nath, Seema</au><au>Sen, Udayaditya</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Large-scale conformational changes and redistribution of surface negative charge upon sugar binding dictate the fidelity of phosphorylation in Vibrio cholerae fructokinase</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2018-11-16</date><risdate>2018</risdate><volume>8</volume><issue>1</issue><spage>16925</spage><epage>13</epage><pages>16925-13</pages><artnum>16925</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Fructokinase (FRK) catalyzes the first step of fructose metabolism i.e., D-fructose to D-fructose-6-phosphate (F6P), however, the mechanistic insights of this reaction are elusive yet. Here we demonstrate that the putative
Vibrio cholerae
fructokinase (
Vc
FRK) exhibit strong fructose-6-kinase activity allosterically modulated by K
+
/Cs
+
. We have determined the crystal structures of apo
-Vc
FRK and its complex with fructose, fructose-ADP-Ca
2+
, fructose-ADP-Ca
2+
-BeF
3
−
. Collectively, we propose the catalytic mechanism and allosteric activation of
Vc
FRK in atomistic details explaining why K
+
/Cs
+
are better activator than Na
+
. Structural results suggest that apo
Vc
FRK allows entry of fructose in the active site, sequester it through several conserved H-bonds and attains a closed form through large scale conformational changes. A double mutant (H108C/T261C-
Vc
FRK), that arrests the closed form but unable to reopen for F6P release, is catalytically impotent highlighting the essentiality of this conformational change. Negative charge accumulation around ATP upon fructose binding, is presumed to redirect the γ-phosphate towards fructose for efficient phosphotransfer. Reduced phosphotransfer rate of the mutants E205Q and E110Q supports this view. Atomic resolution structure of
Vc
FRK-fructose-ADP-Ca
2+
-BeF
3
−
, reported first time for any sugar kinase, suggests that BeF
3
−
moiety alongwith R176, Ca
2+
and ‘anion hole’ limit the conformational space for γ-phosphate favoring in-line phospho-transfer.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>30446722</pmid><doi>10.1038/s41598-018-35236-3</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record> |
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source | Nature Open Access; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Alma/SFX Local Collection; Free Full-Text Journals in Chemistry; Springer Nature OA Free Journals |
subjects | 631/535/1266 631/57 Adenosine diphosphate Allosteric properties Bacteria Binding sites Calcium Catalysis Crystal structure Fructokinase Fructose Fructose-6-phosphate Humanities and Social Sciences Kinases Metabolism multidisciplinary Phosphorylation Potassium Science Science (multidisciplinary) Sugar Surface charge Vibrio cholerae |
title | Large-scale conformational changes and redistribution of surface negative charge upon sugar binding dictate the fidelity of phosphorylation in Vibrio cholerae fructokinase |
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