Coordinated Biosynthesis of the Purine Nucleoside Antibiotics Aristeromycin and Coformycin in Actinomycetes
Purine nucleoside antibiotic pairs, concomitantly produced by a single strain, are an important group of microbial natural products. Here, we report a target-directed genome mining approach to elucidate the biosynthesis of the purine nucleoside antibiotic pair aristeromycin (ARM) and coformycin (COF...
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Veröffentlicht in: | Applied and environmental microbiology 2018-11, Vol.84 (22) |
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creator | Xu, Gudan Kong, Liyuan Gong, Rong Xu, Liudong Gao, Yaojie Jiang, Ming Cai, You-Sheng Hong, Kui Hu, Youcai Liu, Peng Deng, Zixin Price, Neil P J Chen, Wenqing |
description | Purine nucleoside antibiotic pairs, concomitantly produced by a single strain, are an important group of microbial natural products. Here, we report a target-directed genome mining approach to elucidate the biosynthesis of the purine nucleoside antibiotic pair aristeromycin (ARM) and coformycin (COF) in
DSM 45626 (a new producer for ARM and COF) and
NBRC 13005 (a new COF producer). We also provide biochemical data that MacI and MacT function as unusual phosphorylases, catalyzing an irreversible reaction for the tailoring assembly of neplanocin A (NEP-A) and ARM. Moreover, we demonstrate that MacQ is shown to be an adenosine-specific deaminase, likely relieving the potential "excess adenosine" for producing cells. Finally, we report that MacR, an annotated IMP dehydrogenase, is actually an NADPH-dependent GMP reductase, which potentially plays a salvage role for the efficient supply of the precursor pool. Hence, these findings illustrate a fine-tuned pathway for the biosynthesis of ARM and also open the way for the rational search for purine antibiotic pairs.
ARM and COF are well known for their prominent biological activities and unusual chemical structures; however, the logic of their biosynthesis has long been poorly understood. Actually, the new insights into the ARM and COF pathway will not only enrich the biochemical repertoire for interesting enzymatic reactions but may also lay a solid foundation for the combinatorial biosynthesis of this group of antibiotics via a target-directed genome mining strategy. |
doi_str_mv | 10.1128/AEM.01860-18 |
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DSM 45626 (a new producer for ARM and COF) and
NBRC 13005 (a new COF producer). We also provide biochemical data that MacI and MacT function as unusual phosphorylases, catalyzing an irreversible reaction for the tailoring assembly of neplanocin A (NEP-A) and ARM. Moreover, we demonstrate that MacQ is shown to be an adenosine-specific deaminase, likely relieving the potential "excess adenosine" for producing cells. Finally, we report that MacR, an annotated IMP dehydrogenase, is actually an NADPH-dependent GMP reductase, which potentially plays a salvage role for the efficient supply of the precursor pool. Hence, these findings illustrate a fine-tuned pathway for the biosynthesis of ARM and also open the way for the rational search for purine antibiotic pairs.
ARM and COF are well known for their prominent biological activities and unusual chemical structures; however, the logic of their biosynthesis has long been poorly understood. Actually, the new insights into the ARM and COF pathway will not only enrich the biochemical repertoire for interesting enzymatic reactions but may also lay a solid foundation for the combinatorial biosynthesis of this group of antibiotics via a target-directed genome mining strategy.</description><identifier>ISSN: 0099-2240</identifier><identifier>EISSN: 1098-5336</identifier><identifier>DOI: 10.1128/AEM.01860-18</identifier><identifier>PMID: 30217843</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>Actinomycetes ; Adenosine ; Adenosine deaminase ; Antibiotics ; Biosynthesis ; Combinatorial analysis ; Genetics and Molecular Biology ; Genomes ; GMP reductase ; IMP dehydrogenase ; Microorganisms ; NADP ; Natural products ; Nucleosides ; Organic chemistry ; Phosphorylases ; Salvage</subject><ispartof>Applied and environmental microbiology, 2018-11, Vol.84 (22)</ispartof><rights>Copyright © 2018 American Society for Microbiology.</rights><rights>Copyright American Society for Microbiology Nov 2018</rights><rights>Copyright © 2018 American Society for Microbiology. 2018 American Society for Microbiology</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c478t-731e95b6f3fb359b7f935c8338f8088b1e9050c6df30ddb0996986dede93f4a23</citedby><cites>FETCH-LOGICAL-c478t-731e95b6f3fb359b7f935c8338f8088b1e9050c6df30ddb0996986dede93f4a23</cites><orcidid>0000-0003-2557-8960</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6210108/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6210108/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,3187,27923,27924,53790,53792</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30217843$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Elliot, Marie A.</contributor><creatorcontrib>Xu, Gudan</creatorcontrib><creatorcontrib>Kong, Liyuan</creatorcontrib><creatorcontrib>Gong, Rong</creatorcontrib><creatorcontrib>Xu, Liudong</creatorcontrib><creatorcontrib>Gao, Yaojie</creatorcontrib><creatorcontrib>Jiang, Ming</creatorcontrib><creatorcontrib>Cai, You-Sheng</creatorcontrib><creatorcontrib>Hong, Kui</creatorcontrib><creatorcontrib>Hu, Youcai</creatorcontrib><creatorcontrib>Liu, Peng</creatorcontrib><creatorcontrib>Deng, Zixin</creatorcontrib><creatorcontrib>Price, Neil P J</creatorcontrib><creatorcontrib>Chen, Wenqing</creatorcontrib><title>Coordinated Biosynthesis of the Purine Nucleoside Antibiotics Aristeromycin and Coformycin in Actinomycetes</title><title>Applied and environmental microbiology</title><addtitle>Appl Environ Microbiol</addtitle><description>Purine nucleoside antibiotic pairs, concomitantly produced by a single strain, are an important group of microbial natural products. Here, we report a target-directed genome mining approach to elucidate the biosynthesis of the purine nucleoside antibiotic pair aristeromycin (ARM) and coformycin (COF) in
DSM 45626 (a new producer for ARM and COF) and
NBRC 13005 (a new COF producer). We also provide biochemical data that MacI and MacT function as unusual phosphorylases, catalyzing an irreversible reaction for the tailoring assembly of neplanocin A (NEP-A) and ARM. Moreover, we demonstrate that MacQ is shown to be an adenosine-specific deaminase, likely relieving the potential "excess adenosine" for producing cells. Finally, we report that MacR, an annotated IMP dehydrogenase, is actually an NADPH-dependent GMP reductase, which potentially plays a salvage role for the efficient supply of the precursor pool. Hence, these findings illustrate a fine-tuned pathway for the biosynthesis of ARM and also open the way for the rational search for purine antibiotic pairs.
ARM and COF are well known for their prominent biological activities and unusual chemical structures; however, the logic of their biosynthesis has long been poorly understood. 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Kong, Liyuan ; Gong, Rong ; Xu, Liudong ; Gao, Yaojie ; Jiang, Ming ; Cai, You-Sheng ; Hong, Kui ; Hu, Youcai ; Liu, Peng ; Deng, Zixin ; Price, Neil P J ; Chen, Wenqing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c478t-731e95b6f3fb359b7f935c8338f8088b1e9050c6df30ddb0996986dede93f4a23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Actinomycetes</topic><topic>Adenosine</topic><topic>Adenosine deaminase</topic><topic>Antibiotics</topic><topic>Biosynthesis</topic><topic>Combinatorial analysis</topic><topic>Genetics and Molecular Biology</topic><topic>Genomes</topic><topic>GMP reductase</topic><topic>IMP dehydrogenase</topic><topic>Microorganisms</topic><topic>NADP</topic><topic>Natural products</topic><topic>Nucleosides</topic><topic>Organic chemistry</topic><topic>Phosphorylases</topic><topic>Salvage</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xu, Gudan</creatorcontrib><creatorcontrib>Kong, Liyuan</creatorcontrib><creatorcontrib>Gong, Rong</creatorcontrib><creatorcontrib>Xu, Liudong</creatorcontrib><creatorcontrib>Gao, Yaojie</creatorcontrib><creatorcontrib>Jiang, Ming</creatorcontrib><creatorcontrib>Cai, You-Sheng</creatorcontrib><creatorcontrib>Hong, Kui</creatorcontrib><creatorcontrib>Hu, Youcai</creatorcontrib><creatorcontrib>Liu, Peng</creatorcontrib><creatorcontrib>Deng, Zixin</creatorcontrib><creatorcontrib>Price, Neil P J</creatorcontrib><creatorcontrib>Chen, Wenqing</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Applied and environmental microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xu, Gudan</au><au>Kong, Liyuan</au><au>Gong, Rong</au><au>Xu, Liudong</au><au>Gao, Yaojie</au><au>Jiang, Ming</au><au>Cai, You-Sheng</au><au>Hong, Kui</au><au>Hu, Youcai</au><au>Liu, Peng</au><au>Deng, Zixin</au><au>Price, Neil P J</au><au>Chen, Wenqing</au><au>Elliot, Marie A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Coordinated Biosynthesis of the Purine Nucleoside Antibiotics Aristeromycin and Coformycin in Actinomycetes</atitle><jtitle>Applied and environmental microbiology</jtitle><addtitle>Appl Environ Microbiol</addtitle><date>2018-11-15</date><risdate>2018</risdate><volume>84</volume><issue>22</issue><issn>0099-2240</issn><eissn>1098-5336</eissn><abstract>Purine nucleoside antibiotic pairs, concomitantly produced by a single strain, are an important group of microbial natural products. Here, we report a target-directed genome mining approach to elucidate the biosynthesis of the purine nucleoside antibiotic pair aristeromycin (ARM) and coformycin (COF) in
DSM 45626 (a new producer for ARM and COF) and
NBRC 13005 (a new COF producer). We also provide biochemical data that MacI and MacT function as unusual phosphorylases, catalyzing an irreversible reaction for the tailoring assembly of neplanocin A (NEP-A) and ARM. Moreover, we demonstrate that MacQ is shown to be an adenosine-specific deaminase, likely relieving the potential "excess adenosine" for producing cells. Finally, we report that MacR, an annotated IMP dehydrogenase, is actually an NADPH-dependent GMP reductase, which potentially plays a salvage role for the efficient supply of the precursor pool. Hence, these findings illustrate a fine-tuned pathway for the biosynthesis of ARM and also open the way for the rational search for purine antibiotic pairs.
ARM and COF are well known for their prominent biological activities and unusual chemical structures; however, the logic of their biosynthesis has long been poorly understood. Actually, the new insights into the ARM and COF pathway will not only enrich the biochemical repertoire for interesting enzymatic reactions but may also lay a solid foundation for the combinatorial biosynthesis of this group of antibiotics via a target-directed genome mining strategy.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>30217843</pmid><doi>10.1128/AEM.01860-18</doi><orcidid>https://orcid.org/0000-0003-2557-8960</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Actinomycetes Adenosine Adenosine deaminase Antibiotics Biosynthesis Combinatorial analysis Genetics and Molecular Biology Genomes GMP reductase IMP dehydrogenase Microorganisms NADP Natural products Nucleosides Organic chemistry Phosphorylases Salvage |
title | Coordinated Biosynthesis of the Purine Nucleoside Antibiotics Aristeromycin and Coformycin in Actinomycetes |
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