Epidemiological evaluation of an Acinetobacter baumannii outbreak observed at an intensive care unit
To reveal the relationship between clinical and environmental isolates, analyzing both phenotypic and molecular aspects, in an Acinetobacter baumannii (A. baumannii) epidemic, and to use the epidemiological data to determine the source of the epidemic, to identify potential risk factors, and inform...
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Veröffentlicht in: | Saudi medical journal 2018-08, Vol.39 (8), p.767-772 |
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creator | Atik, Tuğba K Atik, Bülent Kilinç, Osman Bektöre, Bayhan Duran, Hülya Selek, Burak M Ceken, Nihan Baylan, Orhan Özyurt, Mustafa |
description | To reveal the relationship between clinical and environmental isolates, analyzing both phenotypic and molecular aspects, in an Acinetobacter baumannii (A. baumannii) epidemic, and to use the epidemiological data to determine the source of the epidemic, to identify potential risk factors, and inform the effort to prevent and manage future epidemics.
Acinetobacter baumannii was isolated from 5 clinical samples in Sultan Abdulhamid Han Training and Research hospital, Istanbul, Turkey, for a week period. To determine potential sources of infection we established cultures surveillance. Microbiological identification and antibiotic susceptibility testing of A. baumannii were performed using conventional methods and automated identification system. Multiplex polymerase chain reaction (PCR) and pulsed-field gel electrophoresis (PFGE) were used for carbapenemase gene screening and clonal relationship evaluation.
Among the environmental samples, bacterial growth was observed in 3 of the sample cultures. Clinical and environmental samples collected from patients X and Y had phenotypically similar antibiotic susceptibility patterns. The clinical and environmental isolates from patients X and Y comprised the first cluster (6 isolates), the isolates from patient Z formed the second cluster (2 isolates).
We detected that all outbreak-related isolates contained the same OXA-type carbapenemase genes. Phenotypic similarity, based on the analysis of antimicrobial susceptibility patterns, was correlated with genotypic similarity. These results suggest that monitoring antimicrobial resistance patterns with daily culture surveillance follow-ups, coupled with the use of amplification based methods to detect that clonal relationships are important for the early identification of outbreaks and rapid deployment of proper countermeasures to halt the spread of the causative agent. |
doi_str_mv | 10.15537/smj.2018.8.22431 |
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Acinetobacter baumannii was isolated from 5 clinical samples in Sultan Abdulhamid Han Training and Research hospital, Istanbul, Turkey, for a week period. To determine potential sources of infection we established cultures surveillance. Microbiological identification and antibiotic susceptibility testing of A. baumannii were performed using conventional methods and automated identification system. Multiplex polymerase chain reaction (PCR) and pulsed-field gel electrophoresis (PFGE) were used for carbapenemase gene screening and clonal relationship evaluation.
Among the environmental samples, bacterial growth was observed in 3 of the sample cultures. Clinical and environmental samples collected from patients X and Y had phenotypically similar antibiotic susceptibility patterns. The clinical and environmental isolates from patients X and Y comprised the first cluster (6 isolates), the isolates from patient Z formed the second cluster (2 isolates).
We detected that all outbreak-related isolates contained the same OXA-type carbapenemase genes. Phenotypic similarity, based on the analysis of antimicrobial susceptibility patterns, was correlated with genotypic similarity. These results suggest that monitoring antimicrobial resistance patterns with daily culture surveillance follow-ups, coupled with the use of amplification based methods to detect that clonal relationships are important for the early identification of outbreaks and rapid deployment of proper countermeasures to halt the spread of the causative agent.</description><identifier>ISSN: 0379-5284</identifier><identifier>EISSN: 1658-3175</identifier><identifier>DOI: 10.15537/smj.2018.8.22431</identifier><identifier>PMID: 30106413</identifier><language>eng</language><publisher>Saudi Arabia: Prince Sultan Military Medical City (PSMMC)</publisher><subject>Acinetobacter baumannii - genetics ; Acinetobacter Infections - epidemiology ; Acinetobacter Infections - microbiology ; Aged ; Aged, 80 and over ; Antibiotics ; Cross Infection - epidemiology ; Cross Infection - microbiology ; Disease Outbreaks - statistics & numerical data ; Electrophoresis, Gel, Pulsed-Field ; Epidemiology ; Female ; Gram-negative bacteria ; Humans ; Intensive care ; Intensive Care Units ; Male ; Middle Aged ; Multiplex Polymerase Chain Reaction ; Nosocomial infections ; Original ; Risk Factors ; Turkey - epidemiology</subject><ispartof>Saudi medical journal, 2018-08, Vol.39 (8), p.767-772</ispartof><rights>Saudi Medical Journal 2018. This work is licensed under the Creative Commons Attribution – Non-Commercial – Share Alike License http://creativecommons.org/licenses/by-nc-sa/3.0 (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Copyright: © Saudi Medical Journal 2018</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c427t-39730960e85c6421e7f87ef5ba84dd3737d8fd60c02ef5b967941516e7ff06b83</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6194996/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6194996/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27923,27924,53790,53792</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30106413$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Atik, Tuğba K</creatorcontrib><creatorcontrib>Atik, Bülent</creatorcontrib><creatorcontrib>Kilinç, Osman</creatorcontrib><creatorcontrib>Bektöre, Bayhan</creatorcontrib><creatorcontrib>Duran, Hülya</creatorcontrib><creatorcontrib>Selek, Burak M</creatorcontrib><creatorcontrib>Ceken, Nihan</creatorcontrib><creatorcontrib>Baylan, Orhan</creatorcontrib><creatorcontrib>Özyurt, Mustafa</creatorcontrib><title>Epidemiological evaluation of an Acinetobacter baumannii outbreak observed at an intensive care unit</title><title>Saudi medical journal</title><addtitle>Saudi Med J</addtitle><description>To reveal the relationship between clinical and environmental isolates, analyzing both phenotypic and molecular aspects, in an Acinetobacter baumannii (A. baumannii) epidemic, and to use the epidemiological data to determine the source of the epidemic, to identify potential risk factors, and inform the effort to prevent and manage future epidemics.
Acinetobacter baumannii was isolated from 5 clinical samples in Sultan Abdulhamid Han Training and Research hospital, Istanbul, Turkey, for a week period. To determine potential sources of infection we established cultures surveillance. Microbiological identification and antibiotic susceptibility testing of A. baumannii were performed using conventional methods and automated identification system. Multiplex polymerase chain reaction (PCR) and pulsed-field gel electrophoresis (PFGE) were used for carbapenemase gene screening and clonal relationship evaluation.
Among the environmental samples, bacterial growth was observed in 3 of the sample cultures. Clinical and environmental samples collected from patients X and Y had phenotypically similar antibiotic susceptibility patterns. The clinical and environmental isolates from patients X and Y comprised the first cluster (6 isolates), the isolates from patient Z formed the second cluster (2 isolates).
We detected that all outbreak-related isolates contained the same OXA-type carbapenemase genes. Phenotypic similarity, based on the analysis of antimicrobial susceptibility patterns, was correlated with genotypic similarity. These results suggest that monitoring antimicrobial resistance patterns with daily culture surveillance follow-ups, coupled with the use of amplification based methods to detect that clonal relationships are important for the early identification of outbreaks and rapid deployment of proper countermeasures to halt the spread of the causative agent.</description><subject>Acinetobacter baumannii - genetics</subject><subject>Acinetobacter Infections - epidemiology</subject><subject>Acinetobacter Infections - microbiology</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Antibiotics</subject><subject>Cross Infection - epidemiology</subject><subject>Cross Infection - microbiology</subject><subject>Disease Outbreaks - statistics & numerical data</subject><subject>Electrophoresis, Gel, Pulsed-Field</subject><subject>Epidemiology</subject><subject>Female</subject><subject>Gram-negative bacteria</subject><subject>Humans</subject><subject>Intensive care</subject><subject>Intensive Care Units</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Multiplex Polymerase Chain Reaction</subject><subject>Nosocomial infections</subject><subject>Original</subject><subject>Risk Factors</subject><subject>Turkey - epidemiology</subject><issn>0379-5284</issn><issn>1658-3175</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><recordid>eNpdkU1r3DAQhkVISbZJfkAuRZBLL97qw9bHpRBC-gELuSRnIcvjVBtb2kryQv59vZvt0uY0oHnmZUYPQteULGnTcPklj-slI1Qt1ZKxmtMTtKCiURWnsjlFC8Klrhqm6nP0Mec1IVwIIs7QOSeUiJryBeruN76D0cchPntnBwxbO0y2-Bhw7LEN-Nb5ACW21hVIuLXTaEPwHseptAnsC45thrSFDtuy430oELLfAnY2AZ6CL5foQ2-HDFeHeoGevt0_3v2oVg_ff97dripXM1kqriUnWhBQjRM1oyB7JaFvWqvqruOSy071nSCOsN2rFlLXtKFi5noiWsUv0Ne33M3UjtA5CCXZwWySH216NdF6838n-F_mOW6NoLrWWswBnw8BKf6eIBcz-uxgGGyAOGXDiFJMz1-sZ_TmHbqOUwrzeYYxphnjSu82om-USzHnBP1xGUrM3qGZHZqdQ6PM3uE88-nfK44Tf6XxP7lmmbU</recordid><startdate>201808</startdate><enddate>201808</enddate><creator>Atik, Tuğba K</creator><creator>Atik, Bülent</creator><creator>Kilinç, Osman</creator><creator>Bektöre, Bayhan</creator><creator>Duran, Hülya</creator><creator>Selek, Burak M</creator><creator>Ceken, Nihan</creator><creator>Baylan, Orhan</creator><creator>Özyurt, Mustafa</creator><general>Prince Sultan Military Medical City (PSMMC)</general><general>Saudi Medical Journal</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K9.</scope><scope>M0S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>201808</creationdate><title>Epidemiological evaluation of an Acinetobacter baumannii outbreak observed at an intensive care unit</title><author>Atik, Tuğba K ; Atik, Bülent ; Kilinç, Osman ; Bektöre, Bayhan ; Duran, Hülya ; Selek, Burak M ; Ceken, Nihan ; Baylan, Orhan ; Özyurt, Mustafa</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c427t-39730960e85c6421e7f87ef5ba84dd3737d8fd60c02ef5b967941516e7ff06b83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Acinetobacter baumannii - genetics</topic><topic>Acinetobacter Infections - epidemiology</topic><topic>Acinetobacter Infections - microbiology</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Antibiotics</topic><topic>Cross Infection - epidemiology</topic><topic>Cross Infection - microbiology</topic><topic>Disease Outbreaks - statistics & numerical data</topic><topic>Electrophoresis, Gel, Pulsed-Field</topic><topic>Epidemiology</topic><topic>Female</topic><topic>Gram-negative bacteria</topic><topic>Humans</topic><topic>Intensive care</topic><topic>Intensive Care Units</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Multiplex Polymerase Chain Reaction</topic><topic>Nosocomial infections</topic><topic>Original</topic><topic>Risk Factors</topic><topic>Turkey - epidemiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Atik, Tuğba K</creatorcontrib><creatorcontrib>Atik, Bülent</creatorcontrib><creatorcontrib>Kilinç, Osman</creatorcontrib><creatorcontrib>Bektöre, Bayhan</creatorcontrib><creatorcontrib>Duran, Hülya</creatorcontrib><creatorcontrib>Selek, Burak M</creatorcontrib><creatorcontrib>Ceken, Nihan</creatorcontrib><creatorcontrib>Baylan, Orhan</creatorcontrib><creatorcontrib>Özyurt, Mustafa</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Saudi medical journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Atik, Tuğba K</au><au>Atik, Bülent</au><au>Kilinç, Osman</au><au>Bektöre, Bayhan</au><au>Duran, Hülya</au><au>Selek, Burak M</au><au>Ceken, Nihan</au><au>Baylan, Orhan</au><au>Özyurt, Mustafa</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Epidemiological evaluation of an Acinetobacter baumannii outbreak observed at an intensive care unit</atitle><jtitle>Saudi medical journal</jtitle><addtitle>Saudi Med J</addtitle><date>2018-08</date><risdate>2018</risdate><volume>39</volume><issue>8</issue><spage>767</spage><epage>772</epage><pages>767-772</pages><issn>0379-5284</issn><eissn>1658-3175</eissn><abstract>To reveal the relationship between clinical and environmental isolates, analyzing both phenotypic and molecular aspects, in an Acinetobacter baumannii (A. baumannii) epidemic, and to use the epidemiological data to determine the source of the epidemic, to identify potential risk factors, and inform the effort to prevent and manage future epidemics.
Acinetobacter baumannii was isolated from 5 clinical samples in Sultan Abdulhamid Han Training and Research hospital, Istanbul, Turkey, for a week period. To determine potential sources of infection we established cultures surveillance. Microbiological identification and antibiotic susceptibility testing of A. baumannii were performed using conventional methods and automated identification system. Multiplex polymerase chain reaction (PCR) and pulsed-field gel electrophoresis (PFGE) were used for carbapenemase gene screening and clonal relationship evaluation.
Among the environmental samples, bacterial growth was observed in 3 of the sample cultures. Clinical and environmental samples collected from patients X and Y had phenotypically similar antibiotic susceptibility patterns. The clinical and environmental isolates from patients X and Y comprised the first cluster (6 isolates), the isolates from patient Z formed the second cluster (2 isolates).
We detected that all outbreak-related isolates contained the same OXA-type carbapenemase genes. Phenotypic similarity, based on the analysis of antimicrobial susceptibility patterns, was correlated with genotypic similarity. These results suggest that monitoring antimicrobial resistance patterns with daily culture surveillance follow-ups, coupled with the use of amplification based methods to detect that clonal relationships are important for the early identification of outbreaks and rapid deployment of proper countermeasures to halt the spread of the causative agent.</abstract><cop>Saudi Arabia</cop><pub>Prince Sultan Military Medical City (PSMMC)</pub><pmid>30106413</pmid><doi>10.15537/smj.2018.8.22431</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Acinetobacter baumannii - genetics Acinetobacter Infections - epidemiology Acinetobacter Infections - microbiology Aged Aged, 80 and over Antibiotics Cross Infection - epidemiology Cross Infection - microbiology Disease Outbreaks - statistics & numerical data Electrophoresis, Gel, Pulsed-Field Epidemiology Female Gram-negative bacteria Humans Intensive care Intensive Care Units Male Middle Aged Multiplex Polymerase Chain Reaction Nosocomial infections Original Risk Factors Turkey - epidemiology |
title | Epidemiological evaluation of an Acinetobacter baumannii outbreak observed at an intensive care unit |
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