Characteristics of circular RNA expression in lung tissues from mice with hypoxia‑induced pulmonary hypertension
Pulmonary hypertension (PH) is a life‑threatening lung disease, characterized by an increase in pulmonary arterial pressure caused by vasoconstriction and vascular remodeling. The pathogenesis of PH is not fully understood, and there is a lack of potential biomarkers for the diagnosis and treatment...
Gespeichert in:
Veröffentlicht in: | International journal of molecular medicine 2018-09, Vol.42 (3), p.1353-1366 |
---|---|
Hauptverfasser: | , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 1366 |
---|---|
container_issue | 3 |
container_start_page | 1353 |
container_title | International journal of molecular medicine |
container_volume | 42 |
creator | Wang, Jian Zhu, Meng-Chan Kalionis, Bill Wu, Jun-Zhen Wang, Lin-Lin Ge, Hai-Yan Chen, Cui-Cui Tang, Xiao-Dan Song, Yuan-Lin He, Hong Xia, Shi-Jin |
description | Pulmonary hypertension (PH) is a life‑threatening lung disease, characterized by an increase in pulmonary arterial pressure caused by vasoconstriction and vascular remodeling. The pathogenesis of PH is not fully understood, and there is a lack of potential biomarkers for the diagnosis and treatment of patients with PH. Non‑coding RNAs with a characteristic covalently closed loop structure, termed circular RNAs (circRNAs), are present in a number of pulmonary diseases. To the best of our knowledge, the present study is the first to use microarray analysis to determine the expression profile of circRNAs in lung tissues from mice with hypoxia‑induced PH. In total, 23 significantly upregulated and 41 significantly downregulated circRNAs were identified. Of these, 12 differentially expressed circRNAs were selected for further validation using reverse transcription‑quantitative polymerase chain reaction. Putative microRNAs (miRNAs) that bind to the dysregulated circRNAs were predicted. Subsequently, bioinformatics tools were used to construct circRNA‑miRNA‑mRNA networks for the two most promising circRNAs, namely mmu_circRNA_004592 and mmu_circRNA_018351. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses of target genes of the dysregulated circRNAs revealed that these dysregulated circRNAs may serve an important role in the pathogenesis of hypoxia‑induced PH. Therefore, these dysregulated circRNAs are candidate diagnostic biomarkers and potential therapeutic targets for PH. |
doi_str_mv | 10.3892/ijmm.2018.3740 |
format | Article |
fullrecord | <record><control><sourceid>gale_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_6089758</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A553760929</galeid><sourcerecordid>A553760929</sourcerecordid><originalsourceid>FETCH-LOGICAL-c485t-78c8e1239b1987369b76ca5e9b9681d4b0da20656dca5f7ddc3698f63ad2eaec3</originalsourceid><addsrcrecordid>eNptUU2LFDEQbURx19WrRwl47jEf3fm4CMPgx8KiIAreQjqpnsnQnbRJt-7e_Av-RX_JpnEdFLZyqKLq1eNVXlU9J3jDpKKv_HEcNxQTuWGiwQ-qcyIUqWnTfH1YaoJFzUTLz6onOR8xpm2j5OPqjCrVckHxeZV2B5OMnSH5PHubUeyR9ckug0no04ctguspQc4-BuQDGpawR7PPeYGM-hRHNHoL6IefD-hwM8Vrb37__OWDWyw4NC3DGINJN-sM0gxh5XlaPerNkOHZXb6ovrx983n3vr76-O5yt72qbSPbuRbSSiCUqY4oKRhXneDWtKA6xSVxTYedoZi33JVuL5yzBSN7zoyjYMCyi-r1H95p6UZwFsKczKCn5MciSUfj9f-T4A96H79rjqUSrSwEL-8IUvxWDp71MS4pFM2aYsWppKzECbU3A2gf-ljI7Oiz1du2ZYJjRVVBbe5Bleeg_GAM0PvSv2_Bpphzgv4knGC9Wq9X6_VqvV6tLwsv_j33BP_rNbsFABauQw</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2096282333</pqid></control><display><type>article</type><title>Characteristics of circular RNA expression in lung tissues from mice with hypoxia‑induced pulmonary hypertension</title><source>Spandidos Publications Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Wang, Jian ; Zhu, Meng-Chan ; Kalionis, Bill ; Wu, Jun-Zhen ; Wang, Lin-Lin ; Ge, Hai-Yan ; Chen, Cui-Cui ; Tang, Xiao-Dan ; Song, Yuan-Lin ; He, Hong ; Xia, Shi-Jin</creator><creatorcontrib>Wang, Jian ; Zhu, Meng-Chan ; Kalionis, Bill ; Wu, Jun-Zhen ; Wang, Lin-Lin ; Ge, Hai-Yan ; Chen, Cui-Cui ; Tang, Xiao-Dan ; Song, Yuan-Lin ; He, Hong ; Xia, Shi-Jin</creatorcontrib><description>Pulmonary hypertension (PH) is a life‑threatening lung disease, characterized by an increase in pulmonary arterial pressure caused by vasoconstriction and vascular remodeling. The pathogenesis of PH is not fully understood, and there is a lack of potential biomarkers for the diagnosis and treatment of patients with PH. Non‑coding RNAs with a characteristic covalently closed loop structure, termed circular RNAs (circRNAs), are present in a number of pulmonary diseases. To the best of our knowledge, the present study is the first to use microarray analysis to determine the expression profile of circRNAs in lung tissues from mice with hypoxia‑induced PH. In total, 23 significantly upregulated and 41 significantly downregulated circRNAs were identified. Of these, 12 differentially expressed circRNAs were selected for further validation using reverse transcription‑quantitative polymerase chain reaction. Putative microRNAs (miRNAs) that bind to the dysregulated circRNAs were predicted. Subsequently, bioinformatics tools were used to construct circRNA‑miRNA‑mRNA networks for the two most promising circRNAs, namely mmu_circRNA_004592 and mmu_circRNA_018351. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses of target genes of the dysregulated circRNAs revealed that these dysregulated circRNAs may serve an important role in the pathogenesis of hypoxia‑induced PH. Therefore, these dysregulated circRNAs are candidate diagnostic biomarkers and potential therapeutic targets for PH.</description><identifier>ISSN: 1107-3756</identifier><identifier>EISSN: 1791-244X</identifier><identifier>DOI: 10.3892/ijmm.2018.3740</identifier><identifier>PMID: 29956720</identifier><language>eng</language><publisher>Greece: Spandidos Publications</publisher><subject>Biomarkers ; Care and treatment ; Development and progression ; Disease ; Gene expression ; Genetic aspects ; Health aspects ; Hypoxia ; Labeling ; Laboratory animals ; Pulmonary arteries ; Pulmonary hypertension ; Rodents</subject><ispartof>International journal of molecular medicine, 2018-09, Vol.42 (3), p.1353-1366</ispartof><rights>COPYRIGHT 2018 Spandidos Publications</rights><rights>Copyright Spandidos Publications UK Ltd. 2018</rights><rights>Copyright: © Wang et al. 2018</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c485t-78c8e1239b1987369b76ca5e9b9681d4b0da20656dca5f7ddc3698f63ad2eaec3</citedby><cites>FETCH-LOGICAL-c485t-78c8e1239b1987369b76ca5e9b9681d4b0da20656dca5f7ddc3698f63ad2eaec3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,315,781,785,886,27929,27930</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29956720$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Jian</creatorcontrib><creatorcontrib>Zhu, Meng-Chan</creatorcontrib><creatorcontrib>Kalionis, Bill</creatorcontrib><creatorcontrib>Wu, Jun-Zhen</creatorcontrib><creatorcontrib>Wang, Lin-Lin</creatorcontrib><creatorcontrib>Ge, Hai-Yan</creatorcontrib><creatorcontrib>Chen, Cui-Cui</creatorcontrib><creatorcontrib>Tang, Xiao-Dan</creatorcontrib><creatorcontrib>Song, Yuan-Lin</creatorcontrib><creatorcontrib>He, Hong</creatorcontrib><creatorcontrib>Xia, Shi-Jin</creatorcontrib><title>Characteristics of circular RNA expression in lung tissues from mice with hypoxia‑induced pulmonary hypertension</title><title>International journal of molecular medicine</title><addtitle>Int J Mol Med</addtitle><description>Pulmonary hypertension (PH) is a life‑threatening lung disease, characterized by an increase in pulmonary arterial pressure caused by vasoconstriction and vascular remodeling. The pathogenesis of PH is not fully understood, and there is a lack of potential biomarkers for the diagnosis and treatment of patients with PH. Non‑coding RNAs with a characteristic covalently closed loop structure, termed circular RNAs (circRNAs), are present in a number of pulmonary diseases. To the best of our knowledge, the present study is the first to use microarray analysis to determine the expression profile of circRNAs in lung tissues from mice with hypoxia‑induced PH. In total, 23 significantly upregulated and 41 significantly downregulated circRNAs were identified. Of these, 12 differentially expressed circRNAs were selected for further validation using reverse transcription‑quantitative polymerase chain reaction. Putative microRNAs (miRNAs) that bind to the dysregulated circRNAs were predicted. Subsequently, bioinformatics tools were used to construct circRNA‑miRNA‑mRNA networks for the two most promising circRNAs, namely mmu_circRNA_004592 and mmu_circRNA_018351. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses of target genes of the dysregulated circRNAs revealed that these dysregulated circRNAs may serve an important role in the pathogenesis of hypoxia‑induced PH. Therefore, these dysregulated circRNAs are candidate diagnostic biomarkers and potential therapeutic targets for PH.</description><subject>Biomarkers</subject><subject>Care and treatment</subject><subject>Development and progression</subject><subject>Disease</subject><subject>Gene expression</subject><subject>Genetic aspects</subject><subject>Health aspects</subject><subject>Hypoxia</subject><subject>Labeling</subject><subject>Laboratory animals</subject><subject>Pulmonary arteries</subject><subject>Pulmonary hypertension</subject><subject>Rodents</subject><issn>1107-3756</issn><issn>1791-244X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><recordid>eNptUU2LFDEQbURx19WrRwl47jEf3fm4CMPgx8KiIAreQjqpnsnQnbRJt-7e_Av-RX_JpnEdFLZyqKLq1eNVXlU9J3jDpKKv_HEcNxQTuWGiwQ-qcyIUqWnTfH1YaoJFzUTLz6onOR8xpm2j5OPqjCrVckHxeZV2B5OMnSH5PHubUeyR9ckug0no04ctguspQc4-BuQDGpawR7PPeYGM-hRHNHoL6IefD-hwM8Vrb37__OWDWyw4NC3DGINJN-sM0gxh5XlaPerNkOHZXb6ovrx983n3vr76-O5yt72qbSPbuRbSSiCUqY4oKRhXneDWtKA6xSVxTYedoZi33JVuL5yzBSN7zoyjYMCyi-r1H95p6UZwFsKczKCn5MciSUfj9f-T4A96H79rjqUSrSwEL-8IUvxWDp71MS4pFM2aYsWppKzECbU3A2gf-ljI7Oiz1du2ZYJjRVVBbe5Bleeg_GAM0PvSv2_Bpphzgv4knGC9Wq9X6_VqvV6tLwsv_j33BP_rNbsFABauQw</recordid><startdate>20180901</startdate><enddate>20180901</enddate><creator>Wang, Jian</creator><creator>Zhu, Meng-Chan</creator><creator>Kalionis, Bill</creator><creator>Wu, Jun-Zhen</creator><creator>Wang, Lin-Lin</creator><creator>Ge, Hai-Yan</creator><creator>Chen, Cui-Cui</creator><creator>Tang, Xiao-Dan</creator><creator>Song, Yuan-Lin</creator><creator>He, Hong</creator><creator>Xia, Shi-Jin</creator><general>Spandidos Publications</general><general>Spandidos Publications UK Ltd</general><general>D.A. Spandidos</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>5PM</scope></search><sort><creationdate>20180901</creationdate><title>Characteristics of circular RNA expression in lung tissues from mice with hypoxia‑induced pulmonary hypertension</title><author>Wang, Jian ; Zhu, Meng-Chan ; Kalionis, Bill ; Wu, Jun-Zhen ; Wang, Lin-Lin ; Ge, Hai-Yan ; Chen, Cui-Cui ; Tang, Xiao-Dan ; Song, Yuan-Lin ; He, Hong ; Xia, Shi-Jin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c485t-78c8e1239b1987369b76ca5e9b9681d4b0da20656dca5f7ddc3698f63ad2eaec3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Biomarkers</topic><topic>Care and treatment</topic><topic>Development and progression</topic><topic>Disease</topic><topic>Gene expression</topic><topic>Genetic aspects</topic><topic>Health aspects</topic><topic>Hypoxia</topic><topic>Labeling</topic><topic>Laboratory animals</topic><topic>Pulmonary arteries</topic><topic>Pulmonary hypertension</topic><topic>Rodents</topic><toplevel>online_resources</toplevel><creatorcontrib>Wang, Jian</creatorcontrib><creatorcontrib>Zhu, Meng-Chan</creatorcontrib><creatorcontrib>Kalionis, Bill</creatorcontrib><creatorcontrib>Wu, Jun-Zhen</creatorcontrib><creatorcontrib>Wang, Lin-Lin</creatorcontrib><creatorcontrib>Ge, Hai-Yan</creatorcontrib><creatorcontrib>Chen, Cui-Cui</creatorcontrib><creatorcontrib>Tang, Xiao-Dan</creatorcontrib><creatorcontrib>Song, Yuan-Lin</creatorcontrib><creatorcontrib>He, Hong</creatorcontrib><creatorcontrib>Xia, Shi-Jin</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>International journal of molecular medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Jian</au><au>Zhu, Meng-Chan</au><au>Kalionis, Bill</au><au>Wu, Jun-Zhen</au><au>Wang, Lin-Lin</au><au>Ge, Hai-Yan</au><au>Chen, Cui-Cui</au><au>Tang, Xiao-Dan</au><au>Song, Yuan-Lin</au><au>He, Hong</au><au>Xia, Shi-Jin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characteristics of circular RNA expression in lung tissues from mice with hypoxia‑induced pulmonary hypertension</atitle><jtitle>International journal of molecular medicine</jtitle><addtitle>Int J Mol Med</addtitle><date>2018-09-01</date><risdate>2018</risdate><volume>42</volume><issue>3</issue><spage>1353</spage><epage>1366</epage><pages>1353-1366</pages><issn>1107-3756</issn><eissn>1791-244X</eissn><abstract>Pulmonary hypertension (PH) is a life‑threatening lung disease, characterized by an increase in pulmonary arterial pressure caused by vasoconstriction and vascular remodeling. The pathogenesis of PH is not fully understood, and there is a lack of potential biomarkers for the diagnosis and treatment of patients with PH. Non‑coding RNAs with a characteristic covalently closed loop structure, termed circular RNAs (circRNAs), are present in a number of pulmonary diseases. To the best of our knowledge, the present study is the first to use microarray analysis to determine the expression profile of circRNAs in lung tissues from mice with hypoxia‑induced PH. In total, 23 significantly upregulated and 41 significantly downregulated circRNAs were identified. Of these, 12 differentially expressed circRNAs were selected for further validation using reverse transcription‑quantitative polymerase chain reaction. Putative microRNAs (miRNAs) that bind to the dysregulated circRNAs were predicted. Subsequently, bioinformatics tools were used to construct circRNA‑miRNA‑mRNA networks for the two most promising circRNAs, namely mmu_circRNA_004592 and mmu_circRNA_018351. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses of target genes of the dysregulated circRNAs revealed that these dysregulated circRNAs may serve an important role in the pathogenesis of hypoxia‑induced PH. Therefore, these dysregulated circRNAs are candidate diagnostic biomarkers and potential therapeutic targets for PH.</abstract><cop>Greece</cop><pub>Spandidos Publications</pub><pmid>29956720</pmid><doi>10.3892/ijmm.2018.3740</doi><tpages>14</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1107-3756 |
ispartof | International journal of molecular medicine, 2018-09, Vol.42 (3), p.1353-1366 |
issn | 1107-3756 1791-244X |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_6089758 |
source | Spandidos Publications Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
subjects | Biomarkers Care and treatment Development and progression Disease Gene expression Genetic aspects Health aspects Hypoxia Labeling Laboratory animals Pulmonary arteries Pulmonary hypertension Rodents |
title | Characteristics of circular RNA expression in lung tissues from mice with hypoxia‑induced pulmonary hypertension |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-15T19%3A14%3A19IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Characteristics%20of%20circular%20RNA%20expression%20in%20lung%20tissues%20from%20mice%20with%20hypoxia%E2%80%91induced%20pulmonary%20hypertension&rft.jtitle=International%20journal%20of%20molecular%20medicine&rft.au=Wang,%20Jian&rft.date=2018-09-01&rft.volume=42&rft.issue=3&rft.spage=1353&rft.epage=1366&rft.pages=1353-1366&rft.issn=1107-3756&rft.eissn=1791-244X&rft_id=info:doi/10.3892/ijmm.2018.3740&rft_dat=%3Cgale_pubme%3EA553760929%3C/gale_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2096282333&rft_id=info:pmid/29956720&rft_galeid=A553760929&rfr_iscdi=true |