The putative compatible solute‐binding protein ProX from Mycobacterium tuberculosis H37Rv: biochemical characterization and crystallographic data
In Mycobacterium tuberculosis, the proX gene encodes a putative compatible solute‐binding protein (MtProX). However, it was found through sequence alignment that the MtProX protein has very different ligand‐binding residues compared with other compatible solute‐binding proteins, implying that MtProX...
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Veröffentlicht in: | Acta crystallographica. Section F, Structural biology communications Structural biology communications, 2018-04, Vol.74 (4), p.231-235 |
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description | In Mycobacterium tuberculosis, the proX gene encodes a putative compatible solute‐binding protein (MtProX). However, it was found through sequence alignment that the MtProX protein has very different ligand‐binding residues compared with other compatible solute‐binding proteins, implying that MtProX may bind to ligands that are as yet uncharacterized. In this work, it was demonstrated that MtProX binds to polyphenols such as phloretin, monoacetylphloroglucinol and 2,4‐dihydroxyacetophloroglucinol with dissociation constants between 20 and 70 µM. Crystals of MtProX were obtained using a precipitant consisting of 0.2 M NaCl, 0.1 M Tris pH 8.5, 25%(w/v) polyethylene glycol 3350. The crystals diffracted to 2.10 Å resolution and belonged to space group P43212, with unit‐cell parameters a = b = 90.17, c = 161.92 Å, α = β = γ = 90.0°. Assuming the presence of two MtProX molecules in the asymmetric unit, the Matthews coefficient was calculated to be 2.74 Å3 Da−1, which corresponds to a solvent content of 55%.
The putative compatible solute‐binding protein ProX from Mycobacterium tuberculosis was found to bind polyphenols instead of betaine, choline or carnitine. X‐ray diffraction data were collected to 2.10 Å resolution. |
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The putative compatible solute‐binding protein ProX from Mycobacterium tuberculosis was found to bind polyphenols instead of betaine, choline or carnitine. X‐ray diffraction data were collected to 2.10 Å resolution.</description><identifier>ISSN: 2053-230X</identifier><identifier>EISSN: 2053-230X</identifier><identifier>DOI: 10.1107/S2053230X18003771</identifier><identifier>PMID: 29633971</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>ABC transporter ; Amino Acid Sequence ; Bacterial Proteins - chemistry ; Bacterial Proteins - metabolism ; Betaine - chemistry ; Betaine - metabolism ; Carnitine - chemistry ; Carnitine - metabolism ; Catalytic Domain ; Choline - chemistry ; Choline - metabolism ; Compatibility ; Crystallization ; Crystallography ; Crystallography, X-Ray ; Crystals ; Ligands ; Lymphocytes B ; Mathematical analysis ; Models, Molecular ; Mycobacterium tuberculosis ; Mycobacterium tuberculosis - metabolism ; Nucleotide sequence ; Polyethylene glycol ; Polyphenols ; Polyphenols - chemistry ; Polyphenols - metabolism ; Protein Conformation ; Proteins ; ProX ; Research Communications ; Sequence Homology ; Sodium chloride ; substrate‐binding protein ; Tuberculosis</subject><ispartof>Acta crystallographica. Section F, Structural biology communications, 2018-04, Vol.74 (4), p.231-235</ispartof><rights>Zhao et al. 2018</rights><rights>Copyright Wiley Subscription Services, Inc. Apr 2018</rights><rights>Zhao et al. 2018 2018</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4344-c9b9cf7d0932b57f980582e877748353c5097d3b7d6485a1e773fd75b34439503</citedby><cites>FETCH-LOGICAL-c4344-c9b9cf7d0932b57f980582e877748353c5097d3b7d6485a1e773fd75b34439503</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894108/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894108/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,1417,27924,27925,45574,45575,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29633971$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhao, Jian-Hong</creatorcontrib><creatorcontrib>Chen, Jiang-Huai</creatorcontrib><creatorcontrib>Wang, Yong</creatorcontrib><creatorcontrib>Wang, Zhi-Ping</creatorcontrib><creatorcontrib>He, Yong-Xing</creatorcontrib><title>The putative compatible solute‐binding protein ProX from Mycobacterium tuberculosis H37Rv: biochemical characterization and crystallographic data</title><title>Acta crystallographica. Section F, Structural biology communications</title><addtitle>Acta Crystallogr F Struct Biol Commun</addtitle><description>In Mycobacterium tuberculosis, the proX gene encodes a putative compatible solute‐binding protein (MtProX). However, it was found through sequence alignment that the MtProX protein has very different ligand‐binding residues compared with other compatible solute‐binding proteins, implying that MtProX may bind to ligands that are as yet uncharacterized. In this work, it was demonstrated that MtProX binds to polyphenols such as phloretin, monoacetylphloroglucinol and 2,4‐dihydroxyacetophloroglucinol with dissociation constants between 20 and 70 µM. Crystals of MtProX were obtained using a precipitant consisting of 0.2 M NaCl, 0.1 M Tris pH 8.5, 25%(w/v) polyethylene glycol 3350. The crystals diffracted to 2.10 Å resolution and belonged to space group P43212, with unit‐cell parameters a = b = 90.17, c = 161.92 Å, α = β = γ = 90.0°. Assuming the presence of two MtProX molecules in the asymmetric unit, the Matthews coefficient was calculated to be 2.74 Å3 Da−1, which corresponds to a solvent content of 55%.
The putative compatible solute‐binding protein ProX from Mycobacterium tuberculosis was found to bind polyphenols instead of betaine, choline or carnitine. X‐ray diffraction data were collected to 2.10 Å resolution.</description><subject>ABC transporter</subject><subject>Amino Acid Sequence</subject><subject>Bacterial Proteins - chemistry</subject><subject>Bacterial Proteins - metabolism</subject><subject>Betaine - chemistry</subject><subject>Betaine - metabolism</subject><subject>Carnitine - chemistry</subject><subject>Carnitine - metabolism</subject><subject>Catalytic Domain</subject><subject>Choline - chemistry</subject><subject>Choline - metabolism</subject><subject>Compatibility</subject><subject>Crystallization</subject><subject>Crystallography</subject><subject>Crystallography, X-Ray</subject><subject>Crystals</subject><subject>Ligands</subject><subject>Lymphocytes B</subject><subject>Mathematical analysis</subject><subject>Models, Molecular</subject><subject>Mycobacterium tuberculosis</subject><subject>Mycobacterium tuberculosis - metabolism</subject><subject>Nucleotide sequence</subject><subject>Polyethylene glycol</subject><subject>Polyphenols</subject><subject>Polyphenols - chemistry</subject><subject>Polyphenols - metabolism</subject><subject>Protein Conformation</subject><subject>Proteins</subject><subject>ProX</subject><subject>Research Communications</subject><subject>Sequence Homology</subject><subject>Sodium chloride</subject><subject>substrate‐binding protein</subject><subject>Tuberculosis</subject><issn>2053-230X</issn><issn>2053-230X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><sourceid>EIF</sourceid><recordid>eNqFkc9qFTEUxgdRbKl9ADcScOPm2vyZ3ExcCKVYK1QrWqGuQpLJ3EnJJNMkc-V21UcQ-oZ9kuZ6a6m6cHUO5_y-Lzl8VfUcwdcIQbb3FUNKMIFnqIGQMIYeVdvr0Ww9e_yg36p2UzqHEK5liPGn1Rbmc0I4Q9vV9WlvwDhlme3SAB2GsXTKGZCCm7K5ufqprG-tX4AxhmysB59jOANdDAP4uNJBSZ1NtNMA8qRM1JMLySZwRNiX5RugbNC9GayWDuhexg18WZ4IHkjfAh1XKUvnwiLKsbcatDLLZ9WTTrpkdu_qTvXt8N3pwdHs-OT9h4P945muSV3PNFdcd6yFnGBFWccbSBtsGsZY3RBKNIWctUSxdl43VCLDGOlaRlURE04h2anebnzHSQ2m1cbnKJ0Yox1kXIkgrfhz420vFmEpaMNrBJti8OrOIIaLyaQsBpu0cU56E6YkMMSE4Xkz5wV9-Rd6Hqboy3m_KE4546RQaEPpGFKKprv_DIJiHZ_4J_WiefHwinvF74wLwDfAD-vM6v-OYv_7If50QhGpyS2s9LvT</recordid><startdate>201804</startdate><enddate>201804</enddate><creator>Zhao, Jian-Hong</creator><creator>Chen, Jiang-Huai</creator><creator>Wang, Yong</creator><creator>Wang, Zhi-Ping</creator><creator>He, Yong-Xing</creator><general>International Union of Crystallography</general><general>Wiley Subscription Services, Inc</general><scope>24P</scope><scope>WIN</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>201804</creationdate><title>The putative compatible solute‐binding protein ProX from Mycobacterium tuberculosis H37Rv: biochemical characterization and crystallographic data</title><author>Zhao, Jian-Hong ; Chen, Jiang-Huai ; Wang, Yong ; Wang, Zhi-Ping ; He, Yong-Xing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4344-c9b9cf7d0932b57f980582e877748353c5097d3b7d6485a1e773fd75b34439503</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>ABC transporter</topic><topic>Amino Acid Sequence</topic><topic>Bacterial Proteins - chemistry</topic><topic>Bacterial Proteins - metabolism</topic><topic>Betaine - chemistry</topic><topic>Betaine - metabolism</topic><topic>Carnitine - chemistry</topic><topic>Carnitine - metabolism</topic><topic>Catalytic Domain</topic><topic>Choline - chemistry</topic><topic>Choline - metabolism</topic><topic>Compatibility</topic><topic>Crystallization</topic><topic>Crystallography</topic><topic>Crystallography, X-Ray</topic><topic>Crystals</topic><topic>Ligands</topic><topic>Lymphocytes B</topic><topic>Mathematical analysis</topic><topic>Models, Molecular</topic><topic>Mycobacterium tuberculosis</topic><topic>Mycobacterium tuberculosis - metabolism</topic><topic>Nucleotide sequence</topic><topic>Polyethylene glycol</topic><topic>Polyphenols</topic><topic>Polyphenols - chemistry</topic><topic>Polyphenols - metabolism</topic><topic>Protein Conformation</topic><topic>Proteins</topic><topic>ProX</topic><topic>Research Communications</topic><topic>Sequence Homology</topic><topic>Sodium chloride</topic><topic>substrate‐binding protein</topic><topic>Tuberculosis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhao, Jian-Hong</creatorcontrib><creatorcontrib>Chen, Jiang-Huai</creatorcontrib><creatorcontrib>Wang, Yong</creatorcontrib><creatorcontrib>Wang, Zhi-Ping</creatorcontrib><creatorcontrib>He, Yong-Xing</creatorcontrib><collection>Wiley Online Library (Open Access Collection)</collection><collection>Wiley Online Library Free Content</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Acta crystallographica. Section F, Structural biology communications</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhao, Jian-Hong</au><au>Chen, Jiang-Huai</au><au>Wang, Yong</au><au>Wang, Zhi-Ping</au><au>He, Yong-Xing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The putative compatible solute‐binding protein ProX from Mycobacterium tuberculosis H37Rv: biochemical characterization and crystallographic data</atitle><jtitle>Acta crystallographica. Section F, Structural biology communications</jtitle><addtitle>Acta Crystallogr F Struct Biol Commun</addtitle><date>2018-04</date><risdate>2018</risdate><volume>74</volume><issue>4</issue><spage>231</spage><epage>235</epage><pages>231-235</pages><issn>2053-230X</issn><eissn>2053-230X</eissn><abstract>In Mycobacterium tuberculosis, the proX gene encodes a putative compatible solute‐binding protein (MtProX). However, it was found through sequence alignment that the MtProX protein has very different ligand‐binding residues compared with other compatible solute‐binding proteins, implying that MtProX may bind to ligands that are as yet uncharacterized. In this work, it was demonstrated that MtProX binds to polyphenols such as phloretin, monoacetylphloroglucinol and 2,4‐dihydroxyacetophloroglucinol with dissociation constants between 20 and 70 µM. Crystals of MtProX were obtained using a precipitant consisting of 0.2 M NaCl, 0.1 M Tris pH 8.5, 25%(w/v) polyethylene glycol 3350. The crystals diffracted to 2.10 Å resolution and belonged to space group P43212, with unit‐cell parameters a = b = 90.17, c = 161.92 Å, α = β = γ = 90.0°. Assuming the presence of two MtProX molecules in the asymmetric unit, the Matthews coefficient was calculated to be 2.74 Å3 Da−1, which corresponds to a solvent content of 55%.
The putative compatible solute‐binding protein ProX from Mycobacterium tuberculosis was found to bind polyphenols instead of betaine, choline or carnitine. X‐ray diffraction data were collected to 2.10 Å resolution.</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><pmid>29633971</pmid><doi>10.1107/S2053230X18003771</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
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subjects | ABC transporter Amino Acid Sequence Bacterial Proteins - chemistry Bacterial Proteins - metabolism Betaine - chemistry Betaine - metabolism Carnitine - chemistry Carnitine - metabolism Catalytic Domain Choline - chemistry Choline - metabolism Compatibility Crystallization Crystallography Crystallography, X-Ray Crystals Ligands Lymphocytes B Mathematical analysis Models, Molecular Mycobacterium tuberculosis Mycobacterium tuberculosis - metabolism Nucleotide sequence Polyethylene glycol Polyphenols Polyphenols - chemistry Polyphenols - metabolism Protein Conformation Proteins ProX Research Communications Sequence Homology Sodium chloride substrate‐binding protein Tuberculosis |
title | The putative compatible solute‐binding protein ProX from Mycobacterium tuberculosis H37Rv: biochemical characterization and crystallographic data |
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