Structure of a eukaryotic cytoplasmic pre‐40S ribosomal subunit

Final maturation of eukaryotic ribosomes occurs in the cytoplasm and requires the sequential removal of associated assembly factors and processing of the immature 20S pre‐RNA. Using cryo‐electron microscopy (cryo‐EM), we have determined the structure of a yeast cytoplasmic pre‐40S particle in comple...

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Veröffentlicht in:The EMBO journal 2018-04, Vol.37 (7), p.n/a
Hauptverfasser: Scaiola, Alain, Peña, Cohue, Weisser, Melanie, Böhringer, Daniel, Leibundgut, Marc, Klingauf‐Nerurkar, Purnima, Gerhardy, Stefan, Panse, Vikram Govind, Ban, Nenad
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container_issue 7
container_start_page
container_title The EMBO journal
container_volume 37
creator Scaiola, Alain
Peña, Cohue
Weisser, Melanie
Böhringer, Daniel
Leibundgut, Marc
Klingauf‐Nerurkar, Purnima
Gerhardy, Stefan
Panse, Vikram Govind
Ban, Nenad
description Final maturation of eukaryotic ribosomes occurs in the cytoplasm and requires the sequential removal of associated assembly factors and processing of the immature 20S pre‐RNA. Using cryo‐electron microscopy (cryo‐EM), we have determined the structure of a yeast cytoplasmic pre‐40S particle in complex with Enp1, Ltv1, Rio2, Tsr1, and Pno1 assembly factors poised to initiate final maturation. The structure reveals that the pre‐rRNA adopts a highly distorted conformation of its 3′ major and 3′ minor domains stabilized by the binding of the assembly factors. This observation is consistent with a mechanism that involves concerted release of the assembly factors orchestrated by the folding of the rRNA in the head of the pre‐40S subunit during the final stages of maturation. Our results provide a structural framework for the coordination of the final maturation events that drive a pre‐40S particle toward the mature form capable of engaging in translation. Synopsis A high‐resolution cryo‐EM structure of the cytoplasmic pre‐40S ribosomal subunit from yeast describes interactions between assembly factors and the immature 20S rRNA and reveals how the assembly factors check the integrity of important pre‐40S regions and prevent premature binding of mRNAs and tRNAs. A cryo‐EM structure of the pre‐40S ribosomal subunit in complex with assembly factors Enp1, Ltv1, Rio2, Tsr1 and Pno1 is determined at 3.4 Å resolution. The cytoplasmic pre‐40S subunit shows a strong distortion of the 3′ major and 3′ minor domains of the rRNA, held in place by assembly factors. Enp1 and Tsr1 interact with the beak of the pre‐40S ribosomal subunit and stabilise the tilted conformation of the small subunit head. Rio2 and Tsr1 prevent rRNA helix 44 from docking into its mature conformation, which propagates structural changes to the binding site of Pno1. Assembly factors may be released in groups of two, coupled to changes seen in the rRNA structure as the 40S subunit shifts towards the mature conformational state. Graphical Abstract A high‐resolution cryo‐EM structure of the yeast ribosome's immature 40S subunit shows how assembly factors interact with the 20S rRNA, check the integrity of important regions, and prevent premature binding of mRNAs and tRNAs.
doi_str_mv 10.15252/embj.201798499
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Using cryo‐electron microscopy (cryo‐EM), we have determined the structure of a yeast cytoplasmic pre‐40S particle in complex with Enp1, Ltv1, Rio2, Tsr1, and Pno1 assembly factors poised to initiate final maturation. The structure reveals that the pre‐rRNA adopts a highly distorted conformation of its 3′ major and 3′ minor domains stabilized by the binding of the assembly factors. This observation is consistent with a mechanism that involves concerted release of the assembly factors orchestrated by the folding of the rRNA in the head of the pre‐40S subunit during the final stages of maturation. Our results provide a structural framework for the coordination of the final maturation events that drive a pre‐40S particle toward the mature form capable of engaging in translation. 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Using cryo‐electron microscopy (cryo‐EM), we have determined the structure of a yeast cytoplasmic pre‐40S particle in complex with Enp1, Ltv1, Rio2, Tsr1, and Pno1 assembly factors poised to initiate final maturation. The structure reveals that the pre‐rRNA adopts a highly distorted conformation of its 3′ major and 3′ minor domains stabilized by the binding of the assembly factors. This observation is consistent with a mechanism that involves concerted release of the assembly factors orchestrated by the folding of the rRNA in the head of the pre‐40S subunit during the final stages of maturation. Our results provide a structural framework for the coordination of the final maturation events that drive a pre‐40S particle toward the mature form capable of engaging in translation. 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Assembly factors may be released in groups of two, coupled to changes seen in the rRNA structure as the 40S subunit shifts towards the mature conformational state. 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Using cryo‐electron microscopy (cryo‐EM), we have determined the structure of a yeast cytoplasmic pre‐40S particle in complex with Enp1, Ltv1, Rio2, Tsr1, and Pno1 assembly factors poised to initiate final maturation. The structure reveals that the pre‐rRNA adopts a highly distorted conformation of its 3′ major and 3′ minor domains stabilized by the binding of the assembly factors. This observation is consistent with a mechanism that involves concerted release of the assembly factors orchestrated by the folding of the rRNA in the head of the pre‐40S subunit during the final stages of maturation. Our results provide a structural framework for the coordination of the final maturation events that drive a pre‐40S particle toward the mature form capable of engaging in translation. Synopsis A high‐resolution cryo‐EM structure of the cytoplasmic pre‐40S ribosomal subunit from yeast describes interactions between assembly factors and the immature 20S rRNA and reveals how the assembly factors check the integrity of important pre‐40S regions and prevent premature binding of mRNAs and tRNAs. A cryo‐EM structure of the pre‐40S ribosomal subunit in complex with assembly factors Enp1, Ltv1, Rio2, Tsr1 and Pno1 is determined at 3.4 Å resolution. The cytoplasmic pre‐40S subunit shows a strong distortion of the 3′ major and 3′ minor domains of the rRNA, held in place by assembly factors. Enp1 and Tsr1 interact with the beak of the pre‐40S ribosomal subunit and stabilise the tilted conformation of the small subunit head. Rio2 and Tsr1 prevent rRNA helix 44 from docking into its mature conformation, which propagates structural changes to the binding site of Pno1. Assembly factors may be released in groups of two, coupled to changes seen in the rRNA structure as the 40S subunit shifts towards the mature conformational state. Graphical Abstract A high‐resolution cryo‐EM structure of the yeast ribosome's immature 40S subunit shows how assembly factors interact with the 20S rRNA, check the integrity of important regions, and prevent premature binding of mRNAs and tRNAs.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>29459436</pmid><doi>10.15252/embj.201798499</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-4770-7068</orcidid><orcidid>https://orcid.org/0000-0002-9527-210X</orcidid><oa>free_for_read</oa></addata></record>
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subjects Assembly
Binding sites
Cryoelectron Microscopy
cryo‐EM
Cytoplasm
Docking
Electron microscopy
EMBO32
EMBO36
EMBO40
Maturation
Molecular Docking Simulation
Nuclear Proteins - chemistry
Nuclear Proteins - genetics
Nuclear Proteins - ultrastructure
pre‐40S ribosome
Protein Conformation
Protein Domains
Protein Interaction Domains and Motifs
Protein-Serine-Threonine Kinases - ultrastructure
Ribonucleic acid
Ribosomal Proteins - chemistry
Ribosomal Proteins - genetics
Ribosomal Proteins - isolation & purification
Ribosomal Proteins - ultrastructure
ribosome
ribosome assembly
ribosome biogenesis
Ribosome Subunits, Small, Eukaryotic - chemistry
Ribosome Subunits, Small, Eukaryotic - genetics
Ribosome Subunits, Small, Eukaryotic - ultrastructure
Ribosomes
RNA
RNA Folding
RNA, Ribosomal - chemistry
RNA, Ribosomal - ultrastructure
RNA-Binding Proteins - chemistry
RNA-Binding Proteins - ultrastructure
rRNA
rRNA 20S
Saccharomyces cerevisiae - genetics
Saccharomyces cerevisiae - ultrastructure
Saccharomyces cerevisiae Proteins - chemistry
Saccharomyces cerevisiae Proteins - genetics
Saccharomyces cerevisiae Proteins - isolation & purification
Saccharomyces cerevisiae Proteins - ultrastructure
Yeast
Yeasts
title Structure of a eukaryotic cytoplasmic pre‐40S ribosomal subunit
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