Lung Topology Characteristics in patients with Chronic Obstructive Pulmonary Disease
Quantitative features that can currently be obtained from medical imaging do not provide a complete picture of Chronic Obstructive Pulmonary Disease (COPD). In this paper, we introduce a novel analytical tool based on persistent homology that extracts quantitative features from chest CT scans to des...
Gespeichert in:
Veröffentlicht in: | Scientific reports 2018-03, Vol.8 (1), p.5341-12, Article 5341 |
---|---|
Hauptverfasser: | , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 12 |
---|---|
container_issue | 1 |
container_start_page | 5341 |
container_title | Scientific reports |
container_volume | 8 |
creator | Belchi, Francisco Pirashvili, Mariam Conway, Joy Bennett, Michael Djukanovic, Ratko Brodzki, Jacek |
description | Quantitative features that can currently be obtained from medical imaging do not provide a complete picture of Chronic Obstructive Pulmonary Disease (COPD). In this paper, we introduce a novel analytical tool based on persistent homology that extracts quantitative features from chest CT scans to describe the geometric structure of the airways inside the lungs. We show that these new radiomic features stratify COPD patients in agreement with the GOLD guidelines for COPD and can distinguish between inspiratory and expiratory scans. These CT measurements are very different to those currently in use and we demonstrate that they convey significant medical information. The results of this study are a proof of concept that topological methods can enhance the standard methodology to create a finer classification of COPD and increase the possibilities of more personalized treatment. |
doi_str_mv | 10.1038/s41598-018-23424-0 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5871819</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2019810334</sourcerecordid><originalsourceid>FETCH-LOGICAL-c474t-39ca5bf94a965771385178285c618398ad0ab361c30eeea5805831f27fd681163</originalsourceid><addsrcrecordid>eNp9kU9PXCEUxUlTU43OF3DRvMRNN6_l8ucBmyZmrG2TSXQxrgnD8GYwb2AKPI3fvjij1rqQDZD7u4dzOQidAv4KmMpvmQFXssUgW0IZYS3-gI4IZrxeCfn46nyIJjnf4ro4UQzUJ3RIFFeUcHGE5rMxrJp53MYhrh6a6dokY4tLPhdvc-NDszXFu1Byc-_LugIpBm-bq0UuabTF37nmehw2MZj00Fz47Ex2J-igN0N2k6f9GN1c_phPf7Wzq5-_p-ez1jLBSkuVNXzRK2ZUx4UAKjkISSS3HUiqpFlis6AdWIqdc4ZLzCWFnoh-2UmAjh6j73vd7bjYuKWtNpMZ9Db5TXWjo_H6_0rwa72Kd5pLARJUFfjyJJDin9Hlojc-WzcMJrg4Zk0wKFm_m7KKnr1Bb-OYQh1vRzEKQtBKkT1lU8w5uf7FDGD9mJve56ZrbnqXm8a16fPrMV5anlOqAN0DuZbCyqV_b78j-xdHxaM1</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2019431773</pqid></control><display><type>article</type><title>Lung Topology Characteristics in patients with Chronic Obstructive Pulmonary Disease</title><source>DOAJ Directory of Open Access Journals</source><source>Springer Nature OA Free Journals</source><source>Nature Free</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Belchi, Francisco ; Pirashvili, Mariam ; Conway, Joy ; Bennett, Michael ; Djukanovic, Ratko ; Brodzki, Jacek</creator><creatorcontrib>Belchi, Francisco ; Pirashvili, Mariam ; Conway, Joy ; Bennett, Michael ; Djukanovic, Ratko ; Brodzki, Jacek</creatorcontrib><description>Quantitative features that can currently be obtained from medical imaging do not provide a complete picture of Chronic Obstructive Pulmonary Disease (COPD). In this paper, we introduce a novel analytical tool based on persistent homology that extracts quantitative features from chest CT scans to describe the geometric structure of the airways inside the lungs. We show that these new radiomic features stratify COPD patients in agreement with the GOLD guidelines for COPD and can distinguish between inspiratory and expiratory scans. These CT measurements are very different to those currently in use and we demonstrate that they convey significant medical information. The results of this study are a proof of concept that topological methods can enhance the standard methodology to create a finer classification of COPD and increase the possibilities of more personalized treatment.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-018-23424-0</identifier><identifier>PMID: 29593257</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>639/705 ; 692/308/2778 ; 692/308/575 ; 692/699/1785 ; Chronic obstructive pulmonary disease ; Computed tomography ; Homology ; Humanities and Social Sciences ; Lung diseases ; multidisciplinary ; Obstructive lung disease ; Patients ; Radiomics ; Respiration ; Science ; Science (multidisciplinary) ; Topology</subject><ispartof>Scientific reports, 2018-03, Vol.8 (1), p.5341-12, Article 5341</ispartof><rights>The Author(s) 2018</rights><rights>2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c474t-39ca5bf94a965771385178285c618398ad0ab361c30eeea5805831f27fd681163</citedby><cites>FETCH-LOGICAL-c474t-39ca5bf94a965771385178285c618398ad0ab361c30eeea5805831f27fd681163</cites><orcidid>0000-0002-4524-1081 ; 0000-0001-5863-3343 ; 0000-0001-6039-5612</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5871819/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5871819/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,41120,42189,51576,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29593257$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Belchi, Francisco</creatorcontrib><creatorcontrib>Pirashvili, Mariam</creatorcontrib><creatorcontrib>Conway, Joy</creatorcontrib><creatorcontrib>Bennett, Michael</creatorcontrib><creatorcontrib>Djukanovic, Ratko</creatorcontrib><creatorcontrib>Brodzki, Jacek</creatorcontrib><title>Lung Topology Characteristics in patients with Chronic Obstructive Pulmonary Disease</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Quantitative features that can currently be obtained from medical imaging do not provide a complete picture of Chronic Obstructive Pulmonary Disease (COPD). In this paper, we introduce a novel analytical tool based on persistent homology that extracts quantitative features from chest CT scans to describe the geometric structure of the airways inside the lungs. We show that these new radiomic features stratify COPD patients in agreement with the GOLD guidelines for COPD and can distinguish between inspiratory and expiratory scans. These CT measurements are very different to those currently in use and we demonstrate that they convey significant medical information. The results of this study are a proof of concept that topological methods can enhance the standard methodology to create a finer classification of COPD and increase the possibilities of more personalized treatment.</description><subject>639/705</subject><subject>692/308/2778</subject><subject>692/308/575</subject><subject>692/699/1785</subject><subject>Chronic obstructive pulmonary disease</subject><subject>Computed tomography</subject><subject>Homology</subject><subject>Humanities and Social Sciences</subject><subject>Lung diseases</subject><subject>multidisciplinary</subject><subject>Obstructive lung disease</subject><subject>Patients</subject><subject>Radiomics</subject><subject>Respiration</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Topology</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU9PXCEUxUlTU43OF3DRvMRNN6_l8ucBmyZmrG2TSXQxrgnD8GYwb2AKPI3fvjij1rqQDZD7u4dzOQidAv4KmMpvmQFXssUgW0IZYS3-gI4IZrxeCfn46nyIJjnf4ro4UQzUJ3RIFFeUcHGE5rMxrJp53MYhrh6a6dokY4tLPhdvc-NDszXFu1Byc-_LugIpBm-bq0UuabTF37nmehw2MZj00Fz47Ex2J-igN0N2k6f9GN1c_phPf7Wzq5-_p-ez1jLBSkuVNXzRK2ZUx4UAKjkISSS3HUiqpFlis6AdWIqdc4ZLzCWFnoh-2UmAjh6j73vd7bjYuKWtNpMZ9Db5TXWjo_H6_0rwa72Kd5pLARJUFfjyJJDin9Hlojc-WzcMJrg4Zk0wKFm_m7KKnr1Bb-OYQh1vRzEKQtBKkT1lU8w5uf7FDGD9mJve56ZrbnqXm8a16fPrMV5anlOqAN0DuZbCyqV_b78j-xdHxaM1</recordid><startdate>20180328</startdate><enddate>20180328</enddate><creator>Belchi, Francisco</creator><creator>Pirashvili, Mariam</creator><creator>Conway, Joy</creator><creator>Bennett, Michael</creator><creator>Djukanovic, Ratko</creator><creator>Brodzki, Jacek</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4524-1081</orcidid><orcidid>https://orcid.org/0000-0001-5863-3343</orcidid><orcidid>https://orcid.org/0000-0001-6039-5612</orcidid></search><sort><creationdate>20180328</creationdate><title>Lung Topology Characteristics in patients with Chronic Obstructive Pulmonary Disease</title><author>Belchi, Francisco ; Pirashvili, Mariam ; Conway, Joy ; Bennett, Michael ; Djukanovic, Ratko ; Brodzki, Jacek</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c474t-39ca5bf94a965771385178285c618398ad0ab361c30eeea5805831f27fd681163</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>639/705</topic><topic>692/308/2778</topic><topic>692/308/575</topic><topic>692/699/1785</topic><topic>Chronic obstructive pulmonary disease</topic><topic>Computed tomography</topic><topic>Homology</topic><topic>Humanities and Social Sciences</topic><topic>Lung diseases</topic><topic>multidisciplinary</topic><topic>Obstructive lung disease</topic><topic>Patients</topic><topic>Radiomics</topic><topic>Respiration</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Topology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Belchi, Francisco</creatorcontrib><creatorcontrib>Pirashvili, Mariam</creatorcontrib><creatorcontrib>Conway, Joy</creatorcontrib><creatorcontrib>Bennett, Michael</creatorcontrib><creatorcontrib>Djukanovic, Ratko</creatorcontrib><creatorcontrib>Brodzki, Jacek</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Belchi, Francisco</au><au>Pirashvili, Mariam</au><au>Conway, Joy</au><au>Bennett, Michael</au><au>Djukanovic, Ratko</au><au>Brodzki, Jacek</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Lung Topology Characteristics in patients with Chronic Obstructive Pulmonary Disease</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2018-03-28</date><risdate>2018</risdate><volume>8</volume><issue>1</issue><spage>5341</spage><epage>12</epage><pages>5341-12</pages><artnum>5341</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Quantitative features that can currently be obtained from medical imaging do not provide a complete picture of Chronic Obstructive Pulmonary Disease (COPD). In this paper, we introduce a novel analytical tool based on persistent homology that extracts quantitative features from chest CT scans to describe the geometric structure of the airways inside the lungs. We show that these new radiomic features stratify COPD patients in agreement with the GOLD guidelines for COPD and can distinguish between inspiratory and expiratory scans. These CT measurements are very different to those currently in use and we demonstrate that they convey significant medical information. The results of this study are a proof of concept that topological methods can enhance the standard methodology to create a finer classification of COPD and increase the possibilities of more personalized treatment.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>29593257</pmid><doi>10.1038/s41598-018-23424-0</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-4524-1081</orcidid><orcidid>https://orcid.org/0000-0001-5863-3343</orcidid><orcidid>https://orcid.org/0000-0001-6039-5612</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2045-2322 |
ispartof | Scientific reports, 2018-03, Vol.8 (1), p.5341-12, Article 5341 |
issn | 2045-2322 2045-2322 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5871819 |
source | DOAJ Directory of Open Access Journals; Springer Nature OA Free Journals; Nature Free; EZB-FREE-00999 freely available EZB journals; PubMed Central; Free Full-Text Journals in Chemistry |
subjects | 639/705 692/308/2778 692/308/575 692/699/1785 Chronic obstructive pulmonary disease Computed tomography Homology Humanities and Social Sciences Lung diseases multidisciplinary Obstructive lung disease Patients Radiomics Respiration Science Science (multidisciplinary) Topology |
title | Lung Topology Characteristics in patients with Chronic Obstructive Pulmonary Disease |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-06T23%3A17%3A19IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Lung%20Topology%20Characteristics%20in%20patients%20with%20Chronic%20Obstructive%20Pulmonary%20Disease&rft.jtitle=Scientific%20reports&rft.au=Belchi,%20Francisco&rft.date=2018-03-28&rft.volume=8&rft.issue=1&rft.spage=5341&rft.epage=12&rft.pages=5341-12&rft.artnum=5341&rft.issn=2045-2322&rft.eissn=2045-2322&rft_id=info:doi/10.1038/s41598-018-23424-0&rft_dat=%3Cproquest_pubme%3E2019810334%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2019431773&rft_id=info:pmid/29593257&rfr_iscdi=true |