deBGR: an efficient and near-exact representation of the weighted de Bruijn graph

Almost all de novo short-read genome and transcriptome assemblers start by building a representation of the de Bruijn Graph of the reads they are given as input. Even when other approaches are used for subsequent assembly (e.g. when one is using 'long read' technologies like those offered...

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Veröffentlicht in:	Bioinformatics (Oxford, England) England), 2017-07, Vol.33 (14), p.i133-i141
Hauptverfasser:	Pandey, Prashant, Bender, Michael A, Johnson, Rob, Patro, Rob
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Computational Biology - methods Gene Expression Profiling - methods Sequence Analysis, RNA - methods Software
Online-Zugang:	Volltext
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