Visualizing the Reaction Cycle in an Iron(II)- and 2‑(Oxo)-glutarate-Dependent Hydroxylase
Iron(II)- and 2-(oxo)-glutarate-dependent oxygenases catalyze diverse oxidative transformations that are often initiated by abstraction of hydrogen from carbon by iron(IV)-oxo (ferryl) complexes. Control of the relative orientation of the substrate C–H and ferryl Fe–O bonds, primarily by direction...
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Veröffentlicht in: | Journal of the American Chemical Society 2017-10, Vol.139 (39), p.13830-13836 |
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container_title | Journal of the American Chemical Society |
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creator | Mitchell, Andrew J Dunham, Noah P Martinie, Ryan J Bergman, Jonathan A Pollock, Christopher J Hu, Kai Allen, Benjamin D Chang, Wei-chen Silakov, Alexey Bollinger, J. Martin Krebs, Carsten Boal, Amie K |
description | Iron(II)- and 2-(oxo)-glutarate-dependent oxygenases catalyze diverse oxidative transformations that are often initiated by abstraction of hydrogen from carbon by iron(IV)-oxo (ferryl) complexes. Control of the relative orientation of the substrate C–H and ferryl Fe–O bonds, primarily by direction of the oxo group into one of two cis-related coordination sites (termed inline and offline), may be generally important for control of the reaction outcome. Neither the ferryl complexes nor their fleeting precursors have been crystallographically characterized, hindering direct experimental validation of the offline hypothesis and elucidation of the means by which the protein might dictate an alternative oxo position. Comparison of high-resolution X-ray crystal structures of the substrate complex, an Fe(II)-peroxysuccinate ferryl precursor, and a vanadium(IV)-oxo mimic of the ferryl intermediate in the l-arginine 3-hydroxylase, VioC, reveals coordinated motions of active site residues that appear to control the intermediate geometries to determine reaction outcome. |
doi_str_mv | 10.1021/jacs.7b07374 |
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Neither the ferryl complexes nor their fleeting precursors have been crystallographically characterized, hindering direct experimental validation of the offline hypothesis and elucidation of the means by which the protein might dictate an alternative oxo position. Comparison of high-resolution X-ray crystal structures of the substrate complex, an Fe(II)-peroxysuccinate ferryl precursor, and a vanadium(IV)-oxo mimic of the ferryl intermediate in the l-arginine 3-hydroxylase, VioC, reveals coordinated motions of active site residues that appear to control the intermediate geometries to determine reaction outcome.</description><identifier>ISSN: 0002-7863</identifier><identifier>EISSN: 1520-5126</identifier><identifier>DOI: 10.1021/jacs.7b07374</identifier><identifier>PMID: 28823155</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><ispartof>Journal of the American Chemical Society, 2017-10, Vol.139 (39), p.13830-13836</ispartof><rights>Copyright © 2017 American Chemical Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a444t-95a7fe1eaf74a6d065e53bba069b6c5ce7b8c2c09cbe83afe724d3101639bbf83</citedby><cites>FETCH-LOGICAL-a444t-95a7fe1eaf74a6d065e53bba069b6c5ce7b8c2c09cbe83afe724d3101639bbf83</cites><orcidid>0000-0003-1257-2850 ; 0000-0002-3302-7053 ; 0000-0002-1234-8472 ; 0000-0001-5736-513X ; 0000-0002-2341-9846 ; 000000015736513X ; 0000000312572850 ; 0000000212348472 ; 0000000223419846 ; 0000000233027053</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jacs.7b07374$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jacs.7b07374$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>230,315,782,786,887,2769,27085,27933,27934,56747,56797</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28823155$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/1439610$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Mitchell, Andrew J</creatorcontrib><creatorcontrib>Dunham, Noah P</creatorcontrib><creatorcontrib>Martinie, Ryan J</creatorcontrib><creatorcontrib>Bergman, Jonathan A</creatorcontrib><creatorcontrib>Pollock, Christopher J</creatorcontrib><creatorcontrib>Hu, Kai</creatorcontrib><creatorcontrib>Allen, Benjamin D</creatorcontrib><creatorcontrib>Chang, Wei-chen</creatorcontrib><creatorcontrib>Silakov, Alexey</creatorcontrib><creatorcontrib>Bollinger, J. 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Neither the ferryl complexes nor their fleeting precursors have been crystallographically characterized, hindering direct experimental validation of the offline hypothesis and elucidation of the means by which the protein might dictate an alternative oxo position. Comparison of high-resolution X-ray crystal structures of the substrate complex, an Fe(II)-peroxysuccinate ferryl precursor, and a vanadium(IV)-oxo mimic of the ferryl intermediate in the l-arginine 3-hydroxylase, VioC, reveals coordinated motions of active site residues that appear to control the intermediate geometries to determine reaction outcome.</description><issn>0002-7863</issn><issn>1520-5126</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNptkd9qFDEUxoNY7LZ657UMXm2hU_NnkszcCLJau1AoiHolhCRzZjfLbLJNMtLtla_gK_okzrLbquDV4XB-5zsf50PoJcEXBFPyZqVtupAGSyarJ2hCOMUlJ1Q8RROMMS1lLdgxOklpNbYVrckzdEzrmjLC-QR9--rSoHt37_yiyEsoPoG22QVfzLa2h8L5QvtiHoOfzudn5di0Bf314-f05i6clYt-yDrqDOV72IBvwefiatvGcLftdYLn6KjTfYIXh3qKvlx--Dy7Kq9vPs5n765LXVVVLhuuZQcEdCcrLVosOHBmjMaiMcJyC9LUllrcWAM10x1IWrWMYCJYY0xXs1P0dq-7GcwaWjvaiLpXm-jWOm5V0E79O_FuqRbhu-I1p0zuBF7vBULKTiXrMtilDd6DzYpUrBEEj9D0cCWG2wFSVmuXLPS99hCGpEjDcDN-VYgRPd-jNoaUInSPXghWu9TULjV1SG3EX_3t_xF-iOnP6d3WKgzRj-_8v9Zv5tCh1g</recordid><startdate>20171004</startdate><enddate>20171004</enddate><creator>Mitchell, Andrew J</creator><creator>Dunham, Noah P</creator><creator>Martinie, Ryan J</creator><creator>Bergman, Jonathan A</creator><creator>Pollock, Christopher J</creator><creator>Hu, Kai</creator><creator>Allen, Benjamin D</creator><creator>Chang, Wei-chen</creator><creator>Silakov, Alexey</creator><creator>Bollinger, J. 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Advanced Photon Source (APS)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Visualizing the Reaction Cycle in an Iron(II)- and 2‑(Oxo)-glutarate-Dependent Hydroxylase</atitle><jtitle>Journal of the American Chemical Society</jtitle><addtitle>J. Am. Chem. Soc</addtitle><date>2017-10-04</date><risdate>2017</risdate><volume>139</volume><issue>39</issue><spage>13830</spage><epage>13836</epage><pages>13830-13836</pages><issn>0002-7863</issn><eissn>1520-5126</eissn><abstract>Iron(II)- and 2-(oxo)-glutarate-dependent oxygenases catalyze diverse oxidative transformations that are often initiated by abstraction of hydrogen from carbon by iron(IV)-oxo (ferryl) complexes. Control of the relative orientation of the substrate C–H and ferryl Fe–O bonds, primarily by direction of the oxo group into one of two cis-related coordination sites (termed inline and offline), may be generally important for control of the reaction outcome. Neither the ferryl complexes nor their fleeting precursors have been crystallographically characterized, hindering direct experimental validation of the offline hypothesis and elucidation of the means by which the protein might dictate an alternative oxo position. Comparison of high-resolution X-ray crystal structures of the substrate complex, an Fe(II)-peroxysuccinate ferryl precursor, and a vanadium(IV)-oxo mimic of the ferryl intermediate in the l-arginine 3-hydroxylase, VioC, reveals coordinated motions of active site residues that appear to control the intermediate geometries to determine reaction outcome.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>28823155</pmid><doi>10.1021/jacs.7b07374</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0003-1257-2850</orcidid><orcidid>https://orcid.org/0000-0002-3302-7053</orcidid><orcidid>https://orcid.org/0000-0002-1234-8472</orcidid><orcidid>https://orcid.org/0000-0001-5736-513X</orcidid><orcidid>https://orcid.org/0000-0002-2341-9846</orcidid><orcidid>https://orcid.org/000000015736513X</orcidid><orcidid>https://orcid.org/0000000312572850</orcidid><orcidid>https://orcid.org/0000000212348472</orcidid><orcidid>https://orcid.org/0000000223419846</orcidid><orcidid>https://orcid.org/0000000233027053</orcidid><oa>free_for_read</oa></addata></record> |
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title | Visualizing the Reaction Cycle in an Iron(II)- and 2‑(Oxo)-glutarate-Dependent Hydroxylase |
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