Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis)

GRAS proteins are important transcription factors that play multifarious roles in regulating the growth and development as well as stress responses of plants. Tea plant is an economically important leaf -type beverage crop. Information concerning GRAS family transcription factors in tea plant is ins...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Scientific reports 2018-03, Vol.8 (1), p.3949-19, Article 3949
Hauptverfasser: Wang, Yong-Xin, Liu, Zhi-Wei, Wu, Zhi-Jun, Li, Hui, Wang, Wen-Li, Cui, Xin, Zhuang, Jing
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 19
container_issue 1
container_start_page 3949
container_title Scientific reports
container_volume 8
creator Wang, Yong-Xin
Liu, Zhi-Wei
Wu, Zhi-Jun
Li, Hui
Wang, Wen-Li
Cui, Xin
Zhuang, Jing
description GRAS proteins are important transcription factors that play multifarious roles in regulating the growth and development as well as stress responses of plants. Tea plant is an economically important leaf -type beverage crop. Information concerning GRAS family transcription factors in tea plant is insufficient. In this study, 52 CsGRAS genes encoding GRAS proteins were identified from tea plant genome database. Phylogenetic analysis of the identified GRAS proteins from tea plant, Arabidopsis, and rice divided these proteins into at least 13 subgroups. Conserved motif analysis revealed that the gene structure and motif compositions of the proteins were considerably conserved among the same subgroup. Functional divergence analysis indicated that the shifted evolutionary rate might act as a major evolutionary force driving subfamily-specific functional diversification. Transcriptome analysis showed that the transcriptional levels of CsGRAS genes under non-stress conditions varied among different tea plant cultivars. qRT-PCR analysis revealed tissue and development stage-specific expression patterns of CsGRAS genes in tea plant. The expression patterns of CsGRAS genes in response to abiotic stresses and gibberellin treatment suggested the possible multiple functions of these genes. This study provides insights into the potential functions of GRAS genes.
doi_str_mv 10.1038/s41598-018-22275-z
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5834537</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2009878207</sourcerecordid><originalsourceid>FETCH-LOGICAL-c511t-da933b1bf9c891a2c174b297f496b3a9aea04edc60ad0954cac04dcda345590e3</originalsourceid><addsrcrecordid>eNp9kU9rFTEUxYMottR-ARcScFMXo_nbmWyE8tCnUChYXYc7mUxNmUnG3Hm1r5_evE5bq4sGQhLuOb_k5hDymrP3nMnmAyquTVMx3lRCiFpXN8_IvmBKV0IK8fzRfo8cIl6yMrQwipuXZE8YzZhSzT65XvuYRl_9Dp2nZcY59MHBHFKkEDvqr6fsEZcjDFsMSFNP199OzmkPYxi2dM4Q0eUw3Zp6cHPKSEOkswc6DRBnerSC0Q9DAIoh-lgg716RFz0M6A_v1gPy4_On76sv1enZ-uvq5LRymvO56sBI2fK2N64xHITjtWqFqXtljlsJBjww5Tt3zKBjRisHjqnOdSCV1oZ5eUA-Ltxp045FWDrMMNgphxHy1iYI9t9KDD_tRbqyuikIWRfA0R0gp18bj7MdA7rSDUSfNmgFK3nUUihRpG__k16mTS7ftlMx09SNYDugWFQuJ8Ts-4fHcGZ32dolW1uytbfZ2ptievO4jQfLfZJFIBcBllK88Pnv3U9g_wD2eLJ6</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2009878207</pqid></control><display><type>article</type><title>Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis)</title><source>MEDLINE</source><source>Nature Free</source><source>DOAJ Directory of Open Access Journals</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><source>Alma/SFX Local Collection</source><source>Free Full-Text Journals in Chemistry</source><source>Springer Nature OA Free Journals</source><creator>Wang, Yong-Xin ; Liu, Zhi-Wei ; Wu, Zhi-Jun ; Li, Hui ; Wang, Wen-Li ; Cui, Xin ; Zhuang, Jing</creator><creatorcontrib>Wang, Yong-Xin ; Liu, Zhi-Wei ; Wu, Zhi-Jun ; Li, Hui ; Wang, Wen-Li ; Cui, Xin ; Zhuang, Jing</creatorcontrib><description>GRAS proteins are important transcription factors that play multifarious roles in regulating the growth and development as well as stress responses of plants. Tea plant is an economically important leaf -type beverage crop. Information concerning GRAS family transcription factors in tea plant is insufficient. In this study, 52 CsGRAS genes encoding GRAS proteins were identified from tea plant genome database. Phylogenetic analysis of the identified GRAS proteins from tea plant, Arabidopsis, and rice divided these proteins into at least 13 subgroups. Conserved motif analysis revealed that the gene structure and motif compositions of the proteins were considerably conserved among the same subgroup. Functional divergence analysis indicated that the shifted evolutionary rate might act as a major evolutionary force driving subfamily-specific functional diversification. Transcriptome analysis showed that the transcriptional levels of CsGRAS genes under non-stress conditions varied among different tea plant cultivars. qRT-PCR analysis revealed tissue and development stage-specific expression patterns of CsGRAS genes in tea plant. The expression patterns of CsGRAS genes in response to abiotic stresses and gibberellin treatment suggested the possible multiple functions of these genes. This study provides insights into the potential functions of GRAS genes.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-018-22275-z</identifier><identifier>PMID: 29500448</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>38 ; 38/22 ; 38/39 ; 38/47 ; 38/77 ; 631/449/711 ; 631/61/338/318 ; Amino Acid Sequence ; Camellia sinensis - genetics ; Camellia sinensis - metabolism ; Camellia sinensis - physiology ; Cold Temperature ; Conserved sequence ; Cultivars ; Droughts ; Economic importance ; Gene expression ; Gene Expression Profiling ; Gene Expression Regulation, Plant ; Genome, Plant ; Genomes ; Hot Temperature ; Humanities and Social Sciences ; multidisciplinary ; Phylogeny ; Proteins ; Science ; Science (multidisciplinary) ; Sequence Homology, Amino Acid ; Stress, Physiological ; Tea ; Transcription factors ; Transcription Factors - chemistry ; Transcription Factors - metabolism</subject><ispartof>Scientific reports, 2018-03, Vol.8 (1), p.3949-19, Article 3949</ispartof><rights>The Author(s) 2018</rights><rights>2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c511t-da933b1bf9c891a2c174b297f496b3a9aea04edc60ad0954cac04dcda345590e3</citedby><cites>FETCH-LOGICAL-c511t-da933b1bf9c891a2c174b297f496b3a9aea04edc60ad0954cac04dcda345590e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5834537/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5834537/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29500448$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Yong-Xin</creatorcontrib><creatorcontrib>Liu, Zhi-Wei</creatorcontrib><creatorcontrib>Wu, Zhi-Jun</creatorcontrib><creatorcontrib>Li, Hui</creatorcontrib><creatorcontrib>Wang, Wen-Li</creatorcontrib><creatorcontrib>Cui, Xin</creatorcontrib><creatorcontrib>Zhuang, Jing</creatorcontrib><title>Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis)</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>GRAS proteins are important transcription factors that play multifarious roles in regulating the growth and development as well as stress responses of plants. Tea plant is an economically important leaf -type beverage crop. Information concerning GRAS family transcription factors in tea plant is insufficient. In this study, 52 CsGRAS genes encoding GRAS proteins were identified from tea plant genome database. Phylogenetic analysis of the identified GRAS proteins from tea plant, Arabidopsis, and rice divided these proteins into at least 13 subgroups. Conserved motif analysis revealed that the gene structure and motif compositions of the proteins were considerably conserved among the same subgroup. Functional divergence analysis indicated that the shifted evolutionary rate might act as a major evolutionary force driving subfamily-specific functional diversification. Transcriptome analysis showed that the transcriptional levels of CsGRAS genes under non-stress conditions varied among different tea plant cultivars. qRT-PCR analysis revealed tissue and development stage-specific expression patterns of CsGRAS genes in tea plant. The expression patterns of CsGRAS genes in response to abiotic stresses and gibberellin treatment suggested the possible multiple functions of these genes. This study provides insights into the potential functions of GRAS genes.</description><subject>38</subject><subject>38/22</subject><subject>38/39</subject><subject>38/47</subject><subject>38/77</subject><subject>631/449/711</subject><subject>631/61/338/318</subject><subject>Amino Acid Sequence</subject><subject>Camellia sinensis - genetics</subject><subject>Camellia sinensis - metabolism</subject><subject>Camellia sinensis - physiology</subject><subject>Cold Temperature</subject><subject>Conserved sequence</subject><subject>Cultivars</subject><subject>Droughts</subject><subject>Economic importance</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genome, Plant</subject><subject>Genomes</subject><subject>Hot Temperature</subject><subject>Humanities and Social Sciences</subject><subject>multidisciplinary</subject><subject>Phylogeny</subject><subject>Proteins</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Sequence Homology, Amino Acid</subject><subject>Stress, Physiological</subject><subject>Tea</subject><subject>Transcription factors</subject><subject>Transcription Factors - chemistry</subject><subject>Transcription Factors - metabolism</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kU9rFTEUxYMottR-ARcScFMXo_nbmWyE8tCnUChYXYc7mUxNmUnG3Hm1r5_evE5bq4sGQhLuOb_k5hDymrP3nMnmAyquTVMx3lRCiFpXN8_IvmBKV0IK8fzRfo8cIl6yMrQwipuXZE8YzZhSzT65XvuYRl_9Dp2nZcY59MHBHFKkEDvqr6fsEZcjDFsMSFNP199OzmkPYxi2dM4Q0eUw3Zp6cHPKSEOkswc6DRBnerSC0Q9DAIoh-lgg716RFz0M6A_v1gPy4_On76sv1enZ-uvq5LRymvO56sBI2fK2N64xHITjtWqFqXtljlsJBjww5Tt3zKBjRisHjqnOdSCV1oZ5eUA-Ltxp045FWDrMMNgphxHy1iYI9t9KDD_tRbqyuikIWRfA0R0gp18bj7MdA7rSDUSfNmgFK3nUUihRpG__k16mTS7ftlMx09SNYDugWFQuJ8Ts-4fHcGZ32dolW1uytbfZ2ptievO4jQfLfZJFIBcBllK88Pnv3U9g_wD2eLJ6</recordid><startdate>20180302</startdate><enddate>20180302</enddate><creator>Wang, Yong-Xin</creator><creator>Liu, Zhi-Wei</creator><creator>Wu, Zhi-Jun</creator><creator>Li, Hui</creator><creator>Wang, Wen-Li</creator><creator>Cui, Xin</creator><creator>Zhuang, Jing</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20180302</creationdate><title>Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis)</title><author>Wang, Yong-Xin ; Liu, Zhi-Wei ; Wu, Zhi-Jun ; Li, Hui ; Wang, Wen-Li ; Cui, Xin ; Zhuang, Jing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c511t-da933b1bf9c891a2c174b297f496b3a9aea04edc60ad0954cac04dcda345590e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>38</topic><topic>38/22</topic><topic>38/39</topic><topic>38/47</topic><topic>38/77</topic><topic>631/449/711</topic><topic>631/61/338/318</topic><topic>Amino Acid Sequence</topic><topic>Camellia sinensis - genetics</topic><topic>Camellia sinensis - metabolism</topic><topic>Camellia sinensis - physiology</topic><topic>Cold Temperature</topic><topic>Conserved sequence</topic><topic>Cultivars</topic><topic>Droughts</topic><topic>Economic importance</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genome, Plant</topic><topic>Genomes</topic><topic>Hot Temperature</topic><topic>Humanities and Social Sciences</topic><topic>multidisciplinary</topic><topic>Phylogeny</topic><topic>Proteins</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Sequence Homology, Amino Acid</topic><topic>Stress, Physiological</topic><topic>Tea</topic><topic>Transcription factors</topic><topic>Transcription Factors - chemistry</topic><topic>Transcription Factors - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Yong-Xin</creatorcontrib><creatorcontrib>Liu, Zhi-Wei</creatorcontrib><creatorcontrib>Wu, Zhi-Jun</creatorcontrib><creatorcontrib>Li, Hui</creatorcontrib><creatorcontrib>Wang, Wen-Li</creatorcontrib><creatorcontrib>Cui, Xin</creatorcontrib><creatorcontrib>Zhuang, Jing</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Health and Medical</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>ProQuest Science Journals</collection><collection>ProQuest Biological Science Journals</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Yong-Xin</au><au>Liu, Zhi-Wei</au><au>Wu, Zhi-Jun</au><au>Li, Hui</au><au>Wang, Wen-Li</au><au>Cui, Xin</au><au>Zhuang, Jing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis)</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2018-03-02</date><risdate>2018</risdate><volume>8</volume><issue>1</issue><spage>3949</spage><epage>19</epage><pages>3949-19</pages><artnum>3949</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>GRAS proteins are important transcription factors that play multifarious roles in regulating the growth and development as well as stress responses of plants. Tea plant is an economically important leaf -type beverage crop. Information concerning GRAS family transcription factors in tea plant is insufficient. In this study, 52 CsGRAS genes encoding GRAS proteins were identified from tea plant genome database. Phylogenetic analysis of the identified GRAS proteins from tea plant, Arabidopsis, and rice divided these proteins into at least 13 subgroups. Conserved motif analysis revealed that the gene structure and motif compositions of the proteins were considerably conserved among the same subgroup. Functional divergence analysis indicated that the shifted evolutionary rate might act as a major evolutionary force driving subfamily-specific functional diversification. Transcriptome analysis showed that the transcriptional levels of CsGRAS genes under non-stress conditions varied among different tea plant cultivars. qRT-PCR analysis revealed tissue and development stage-specific expression patterns of CsGRAS genes in tea plant. The expression patterns of CsGRAS genes in response to abiotic stresses and gibberellin treatment suggested the possible multiple functions of these genes. This study provides insights into the potential functions of GRAS genes.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>29500448</pmid><doi>10.1038/s41598-018-22275-z</doi><tpages>19</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2045-2322
ispartof Scientific reports, 2018-03, Vol.8 (1), p.3949-19, Article 3949
issn 2045-2322
2045-2322
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5834537
source MEDLINE; Nature Free; DOAJ Directory of Open Access Journals; EZB-FREE-00999 freely available EZB journals; PubMed Central; Alma/SFX Local Collection; Free Full-Text Journals in Chemistry; Springer Nature OA Free Journals
subjects 38
38/22
38/39
38/47
38/77
631/449/711
631/61/338/318
Amino Acid Sequence
Camellia sinensis - genetics
Camellia sinensis - metabolism
Camellia sinensis - physiology
Cold Temperature
Conserved sequence
Cultivars
Droughts
Economic importance
Gene expression
Gene Expression Profiling
Gene Expression Regulation, Plant
Genome, Plant
Genomes
Hot Temperature
Humanities and Social Sciences
multidisciplinary
Phylogeny
Proteins
Science
Science (multidisciplinary)
Sequence Homology, Amino Acid
Stress, Physiological
Tea
Transcription factors
Transcription Factors - chemistry
Transcription Factors - metabolism
title Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis)
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-05T00%3A30%3A12IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genome-wide%20identification%20and%20expression%20analysis%20of%20GRAS%20family%20transcription%20factors%20in%20tea%20plant%20(Camellia%20sinensis)&rft.jtitle=Scientific%20reports&rft.au=Wang,%20Yong-Xin&rft.date=2018-03-02&rft.volume=8&rft.issue=1&rft.spage=3949&rft.epage=19&rft.pages=3949-19&rft.artnum=3949&rft.issn=2045-2322&rft.eissn=2045-2322&rft_id=info:doi/10.1038/s41598-018-22275-z&rft_dat=%3Cproquest_pubme%3E2009878207%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2009878207&rft_id=info:pmid/29500448&rfr_iscdi=true