Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary
Ammonia oxidation is a critical process of estuarine nitrogen cycling involving ammonia-oxidizing archaea (AOA) and bacteria (AOB). However, the distribution patterns of ammonia-oxidizing microorganisms (AOMs) between different habitats in the same area remain unclear. The present study investigated...
Gespeichert in:
| Veröffentlicht in: | Scientific reports 2018-01, Vol.8 (1), p.1584-10, Article 1584 |
|---|---|
| Hauptverfasser: | , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 10 |
|---|---|
| container_issue | 1 |
| container_start_page | 1584 |
| container_title | Scientific reports |
| container_volume | 8 |
| creator | Li, Mingcong Wei, Guangshan Shi, Wenchong Sun, Zhongtao Li, Han Wang, Xiaoyun Gao, Zheng |
| description | Ammonia oxidation is a critical process of estuarine nitrogen cycling involving ammonia-oxidizing archaea (AOA) and bacteria (AOB). However, the distribution patterns of ammonia-oxidizing microorganisms (AOMs) between different habitats in the same area remain unclear. The present study investigated the AOMs’ abundance and community compositions in both sediment and water habitats of the Yellow River estuary. Quantitative PCR (qPCR) revealed that AOA showed significant higher abundance than AOB both in sediment and water samples. AOA and AOB abundance distribution trends were consistent in sediment but distinct in water along the sampling sites. Clone library-based analyses showed that AOA sequences were affiliated with
Nitrososphaera, Nitrosopumilus
and
Nitrosotalea
clusters. Generally,
Nitrososphaera
was predominant in sediment, while
Nitrosopumilus
and
Nitrosotalea
dominated in water column. AOB sequences were classified into genera
Nitrosospira
and
Nitrosomonas
, and
Nitrosospira
dominated in both habitats. Principal coordinate analysis (PCoA) also indicated AOA community structures exhibited significant differences between two habitats, while AOB were not. Ammonium and carbon contents were the potential key factors to influence AOMs’ abundance and compositions in sediment, while no measured variables were determined to have major influences on communities in water habitat. These findings increase the understanding of the AOMs’ distribution patterns in estuarine ecosystems. |
| doi_str_mv | 10.1038/s41598-018-20044-6 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5785527</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1992012356</sourcerecordid><originalsourceid>FETCH-LOGICAL-c511t-e304157e05fb90d2b3bb48d3c07a9586ab0c1dce5ee43ef2e0f7eec5e38609483</originalsourceid><addsrcrecordid>eNp1kU1LHTEYhYMoVdQ_0IUEunEzNZ8zk02h2NoWBEHqwlXIZN65NzKT3CYZbd31nzfXq3JbaDYJOU9O3sNB6C0l7ynh7VkSVKq2IrStGCFCVPUOOmBEyIpxxna3zvvoOKU7UpZkSlD1Bu0zxRta180B-v3Jpey8zbgvh-i6Obvg8crkDNEnHAZspil4Z6rw0_Xu0fkFNtEuDRhsfI87YwvpDHYeJ-jdBD4_CQ-m3GMbxnnya5u8BHwL4xge8LW7LxKkPJv46wjtDWZMcPy8H6Kbi8_fz79Wl1dfvp1_vKyspDRXwElJ3ACRQ6dIzzredaLtuSWNUbKtTUcs7S1IAMFhYECGBsBK4G1NlGj5Ifqw8V3N3QSF9DmaUa-im8oUOhin_1a8W-pFuNeyaaVkTTE4fTaI4cdcpteTS7YkMh7CnDRVihHKuKwL-u4f9C7M0Zd4a4rSWjVSFIptKBtDShGG12Eo0euS9aZkXUrWTyXrtfXJdozXJy-VFoBvgFQkv4C49ff_bf8AjI21lg</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1991169754</pqid></control><display><type>article</type><title>Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary</title><source>DOAJ Directory of Open Access Journals</source><source>Springer Nature OA Free Journals</source><source>Nature Free</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><source>Alma/SFX Local Collection</source><source>Free Full-Text Journals in Chemistry</source><creator>Li, Mingcong ; Wei, Guangshan ; Shi, Wenchong ; Sun, Zhongtao ; Li, Han ; Wang, Xiaoyun ; Gao, Zheng</creator><creatorcontrib>Li, Mingcong ; Wei, Guangshan ; Shi, Wenchong ; Sun, Zhongtao ; Li, Han ; Wang, Xiaoyun ; Gao, Zheng</creatorcontrib><description>Ammonia oxidation is a critical process of estuarine nitrogen cycling involving ammonia-oxidizing archaea (AOA) and bacteria (AOB). However, the distribution patterns of ammonia-oxidizing microorganisms (AOMs) between different habitats in the same area remain unclear. The present study investigated the AOMs’ abundance and community compositions in both sediment and water habitats of the Yellow River estuary. Quantitative PCR (qPCR) revealed that AOA showed significant higher abundance than AOB both in sediment and water samples. AOA and AOB abundance distribution trends were consistent in sediment but distinct in water along the sampling sites. Clone library-based analyses showed that AOA sequences were affiliated with
Nitrososphaera, Nitrosopumilus
and
Nitrosotalea
clusters. Generally,
Nitrososphaera
was predominant in sediment, while
Nitrosopumilus
and
Nitrosotalea
dominated in water column. AOB sequences were classified into genera
Nitrosospira
and
Nitrosomonas
, and
Nitrosospira
dominated in both habitats. Principal coordinate analysis (PCoA) also indicated AOA community structures exhibited significant differences between two habitats, while AOB were not. Ammonium and carbon contents were the potential key factors to influence AOMs’ abundance and compositions in sediment, while no measured variables were determined to have major influences on communities in water habitat. These findings increase the understanding of the AOMs’ distribution patterns in estuarine ecosystems.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-018-20044-6</identifier><identifier>PMID: 29371667</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>38/77 ; 631/158/855 ; 704/172/4081 ; Abundance ; Ammonia ; Ammonium ; Bacteria ; Estuaries ; Estuarine ecosystems ; Genera ; Habitats ; Humanities and Social Sciences ; Microorganisms ; multidisciplinary ; Nitrogen cycle ; Oxidation ; Rivers ; Science ; Science (multidisciplinary) ; Sediments ; Water analysis ; Water column ; Water sampling</subject><ispartof>Scientific reports, 2018-01, Vol.8 (1), p.1584-10, Article 1584</ispartof><rights>The Author(s) 2018</rights><rights>2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c511t-e304157e05fb90d2b3bb48d3c07a9586ab0c1dce5ee43ef2e0f7eec5e38609483</citedby><cites>FETCH-LOGICAL-c511t-e304157e05fb90d2b3bb48d3c07a9586ab0c1dce5ee43ef2e0f7eec5e38609483</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5785527/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5785527/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27903,27904,41099,42168,51555,53770,53772</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29371667$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Mingcong</creatorcontrib><creatorcontrib>Wei, Guangshan</creatorcontrib><creatorcontrib>Shi, Wenchong</creatorcontrib><creatorcontrib>Sun, Zhongtao</creatorcontrib><creatorcontrib>Li, Han</creatorcontrib><creatorcontrib>Wang, Xiaoyun</creatorcontrib><creatorcontrib>Gao, Zheng</creatorcontrib><title>Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Ammonia oxidation is a critical process of estuarine nitrogen cycling involving ammonia-oxidizing archaea (AOA) and bacteria (AOB). However, the distribution patterns of ammonia-oxidizing microorganisms (AOMs) between different habitats in the same area remain unclear. The present study investigated the AOMs’ abundance and community compositions in both sediment and water habitats of the Yellow River estuary. Quantitative PCR (qPCR) revealed that AOA showed significant higher abundance than AOB both in sediment and water samples. AOA and AOB abundance distribution trends were consistent in sediment but distinct in water along the sampling sites. Clone library-based analyses showed that AOA sequences were affiliated with
Nitrososphaera, Nitrosopumilus
and
Nitrosotalea
clusters. Generally,
Nitrososphaera
was predominant in sediment, while
Nitrosopumilus
and
Nitrosotalea
dominated in water column. AOB sequences were classified into genera
Nitrosospira
and
Nitrosomonas
, and
Nitrosospira
dominated in both habitats. Principal coordinate analysis (PCoA) also indicated AOA community structures exhibited significant differences between two habitats, while AOB were not. Ammonium and carbon contents were the potential key factors to influence AOMs’ abundance and compositions in sediment, while no measured variables were determined to have major influences on communities in water habitat. These findings increase the understanding of the AOMs’ distribution patterns in estuarine ecosystems.</description><subject>38/77</subject><subject>631/158/855</subject><subject>704/172/4081</subject><subject>Abundance</subject><subject>Ammonia</subject><subject>Ammonium</subject><subject>Bacteria</subject><subject>Estuaries</subject><subject>Estuarine ecosystems</subject><subject>Genera</subject><subject>Habitats</subject><subject>Humanities and Social Sciences</subject><subject>Microorganisms</subject><subject>multidisciplinary</subject><subject>Nitrogen cycle</subject><subject>Oxidation</subject><subject>Rivers</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Sediments</subject><subject>Water analysis</subject><subject>Water column</subject><subject>Water sampling</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kU1LHTEYhYMoVdQ_0IUEunEzNZ8zk02h2NoWBEHqwlXIZN65NzKT3CYZbd31nzfXq3JbaDYJOU9O3sNB6C0l7ynh7VkSVKq2IrStGCFCVPUOOmBEyIpxxna3zvvoOKU7UpZkSlD1Bu0zxRta180B-v3Jpey8zbgvh-i6Obvg8crkDNEnHAZspil4Z6rw0_Xu0fkFNtEuDRhsfI87YwvpDHYeJ-jdBD4_CQ-m3GMbxnnya5u8BHwL4xge8LW7LxKkPJv46wjtDWZMcPy8H6Kbi8_fz79Wl1dfvp1_vKyspDRXwElJ3ACRQ6dIzzredaLtuSWNUbKtTUcs7S1IAMFhYECGBsBK4G1NlGj5Ifqw8V3N3QSF9DmaUa-im8oUOhin_1a8W-pFuNeyaaVkTTE4fTaI4cdcpteTS7YkMh7CnDRVihHKuKwL-u4f9C7M0Zd4a4rSWjVSFIptKBtDShGG12Eo0euS9aZkXUrWTyXrtfXJdozXJy-VFoBvgFQkv4C49ff_bf8AjI21lg</recordid><startdate>20180125</startdate><enddate>20180125</enddate><creator>Li, Mingcong</creator><creator>Wei, Guangshan</creator><creator>Shi, Wenchong</creator><creator>Sun, Zhongtao</creator><creator>Li, Han</creator><creator>Wang, Xiaoyun</creator><creator>Gao, Zheng</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20180125</creationdate><title>Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary</title><author>Li, Mingcong ; Wei, Guangshan ; Shi, Wenchong ; Sun, Zhongtao ; Li, Han ; Wang, Xiaoyun ; Gao, Zheng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c511t-e304157e05fb90d2b3bb48d3c07a9586ab0c1dce5ee43ef2e0f7eec5e38609483</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>38/77</topic><topic>631/158/855</topic><topic>704/172/4081</topic><topic>Abundance</topic><topic>Ammonia</topic><topic>Ammonium</topic><topic>Bacteria</topic><topic>Estuaries</topic><topic>Estuarine ecosystems</topic><topic>Genera</topic><topic>Habitats</topic><topic>Humanities and Social Sciences</topic><topic>Microorganisms</topic><topic>multidisciplinary</topic><topic>Nitrogen cycle</topic><topic>Oxidation</topic><topic>Rivers</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Sediments</topic><topic>Water analysis</topic><topic>Water column</topic><topic>Water sampling</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Mingcong</creatorcontrib><creatorcontrib>Wei, Guangshan</creatorcontrib><creatorcontrib>Shi, Wenchong</creatorcontrib><creatorcontrib>Sun, Zhongtao</creatorcontrib><creatorcontrib>Li, Han</creatorcontrib><creatorcontrib>Wang, Xiaoyun</creatorcontrib><creatorcontrib>Gao, Zheng</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Mingcong</au><au>Wei, Guangshan</au><au>Shi, Wenchong</au><au>Sun, Zhongtao</au><au>Li, Han</au><au>Wang, Xiaoyun</au><au>Gao, Zheng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2018-01-25</date><risdate>2018</risdate><volume>8</volume><issue>1</issue><spage>1584</spage><epage>10</epage><pages>1584-10</pages><artnum>1584</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Ammonia oxidation is a critical process of estuarine nitrogen cycling involving ammonia-oxidizing archaea (AOA) and bacteria (AOB). However, the distribution patterns of ammonia-oxidizing microorganisms (AOMs) between different habitats in the same area remain unclear. The present study investigated the AOMs’ abundance and community compositions in both sediment and water habitats of the Yellow River estuary. Quantitative PCR (qPCR) revealed that AOA showed significant higher abundance than AOB both in sediment and water samples. AOA and AOB abundance distribution trends were consistent in sediment but distinct in water along the sampling sites. Clone library-based analyses showed that AOA sequences were affiliated with
Nitrososphaera, Nitrosopumilus
and
Nitrosotalea
clusters. Generally,
Nitrososphaera
was predominant in sediment, while
Nitrosopumilus
and
Nitrosotalea
dominated in water column. AOB sequences were classified into genera
Nitrosospira
and
Nitrosomonas
, and
Nitrosospira
dominated in both habitats. Principal coordinate analysis (PCoA) also indicated AOA community structures exhibited significant differences between two habitats, while AOB were not. Ammonium and carbon contents were the potential key factors to influence AOMs’ abundance and compositions in sediment, while no measured variables were determined to have major influences on communities in water habitat. These findings increase the understanding of the AOMs’ distribution patterns in estuarine ecosystems.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>29371667</pmid><doi>10.1038/s41598-018-20044-6</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2045-2322 |
| ispartof | Scientific reports, 2018-01, Vol.8 (1), p.1584-10, Article 1584 |
| issn | 2045-2322 2045-2322 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5785527 |
| source | DOAJ Directory of Open Access Journals; Springer Nature OA Free Journals; Nature Free; EZB-FREE-00999 freely available EZB journals; PubMed Central; Alma/SFX Local Collection; Free Full-Text Journals in Chemistry |
| subjects | 38/77 631/158/855 704/172/4081 Abundance Ammonia Ammonium Bacteria Estuaries Estuarine ecosystems Genera Habitats Humanities and Social Sciences Microorganisms multidisciplinary Nitrogen cycle Oxidation Rivers Science Science (multidisciplinary) Sediments Water analysis Water column Water sampling |
| title | Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-22T12%3A47%3A04IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Distinct%20distribution%20patterns%20of%20ammonia-oxidizing%20archaea%20and%20bacteria%20in%20sediment%20and%20water%20column%20of%20the%20Yellow%20River%20estuary&rft.jtitle=Scientific%20reports&rft.au=Li,%20Mingcong&rft.date=2018-01-25&rft.volume=8&rft.issue=1&rft.spage=1584&rft.epage=10&rft.pages=1584-10&rft.artnum=1584&rft.issn=2045-2322&rft.eissn=2045-2322&rft_id=info:doi/10.1038/s41598-018-20044-6&rft_dat=%3Cproquest_pubme%3E1992012356%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1991169754&rft_id=info:pmid/29371667&rfr_iscdi=true |