Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways
Nucleotide excision repair is initiated by two different damage recognition subpathways, global genome repair (GGR) and transcription-coupled repair (TCR). In GGR, XPC detects DNA lesions and recruits TFIIH via interaction with the pleckstrin homology (PH) domain of TFIIH subunit p62. In TCR, an elo...
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Veröffentlicht in: | Nucleic acids research 2017-12, Vol.45 (22), p.13043-13055 |
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creator | Okuda, Masahiko Nakazawa, Yuka Guo, Chaowan Ogi, Tomoo Nishimura, Yoshifumi |
description | Nucleotide excision repair is initiated by two different damage recognition subpathways, global genome repair (GGR) and transcription-coupled repair (TCR). In GGR, XPC detects DNA lesions and recruits TFIIH via interaction with the pleckstrin homology (PH) domain of TFIIH subunit p62. In TCR, an elongating form of RNA Polymerase II detects a lesion on the transcribed strand and recruits TFIIH by an unknown mechanism. Here, we found that the TCR initiation factor UVSSA forms a stable complex with the PH domain of p62 via a short acidic string in the central region of UVSSA, and determined the complex structure by NMR. The acidic string of UVSSA binds strongly to the basic groove of the PH domain by inserting Phe408 and Val411 into two pockets, highly resembling the interaction mechanism of XPC with p62. Mutational binding analysis validated the structure and identified residues crucial for binding. TCR activity was markedly diminished in UVSSA-deficient cells expressing UVSSA mutated at Phe408 or Val411. Thus, a common TFIIH recruitment mechanism is shared by UVSSA in TCR and XPC in GGR. |
doi_str_mv | 10.1093/nar/gkx970 |
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In GGR, XPC detects DNA lesions and recruits TFIIH via interaction with the pleckstrin homology (PH) domain of TFIIH subunit p62. In TCR, an elongating form of RNA Polymerase II detects a lesion on the transcribed strand and recruits TFIIH by an unknown mechanism. Here, we found that the TCR initiation factor UVSSA forms a stable complex with the PH domain of p62 via a short acidic string in the central region of UVSSA, and determined the complex structure by NMR. The acidic string of UVSSA binds strongly to the basic groove of the PH domain by inserting Phe408 and Val411 into two pockets, highly resembling the interaction mechanism of XPC with p62. Mutational binding analysis validated the structure and identified residues crucial for binding. TCR activity was markedly diminished in UVSSA-deficient cells expressing UVSSA mutated at Phe408 or Val411. Thus, a common TFIIH recruitment mechanism is shared by UVSSA in TCR and XPC in GGR.</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gkx970</identifier><identifier>PMID: 29069470</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Amino Acid Sequence ; Binding Sites - genetics ; Carrier Proteins - chemistry ; Carrier Proteins - genetics ; Carrier Proteins - metabolism ; DNA - genetics ; DNA - metabolism ; DNA Damage ; DNA Repair ; DNA-Binding Proteins - chemistry ; DNA-Binding Proteins - genetics ; DNA-Binding Proteins - metabolism ; HEK293 Cells ; Humans ; Models, Molecular ; Mutation ; Protein Binding ; Protein Domains ; Sequence Homology, Amino Acid ; Structural Biology ; Transcription Factor TFIIH - chemistry ; Transcription Factor TFIIH - genetics ; Transcription Factor TFIIH - metabolism</subject><ispartof>Nucleic acids research, 2017-12, Vol.45 (22), p.13043-13055</ispartof><rights>The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.</rights><rights>The Author(s) 2017. 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In GGR, XPC detects DNA lesions and recruits TFIIH via interaction with the pleckstrin homology (PH) domain of TFIIH subunit p62. In TCR, an elongating form of RNA Polymerase II detects a lesion on the transcribed strand and recruits TFIIH by an unknown mechanism. Here, we found that the TCR initiation factor UVSSA forms a stable complex with the PH domain of p62 via a short acidic string in the central region of UVSSA, and determined the complex structure by NMR. The acidic string of UVSSA binds strongly to the basic groove of the PH domain by inserting Phe408 and Val411 into two pockets, highly resembling the interaction mechanism of XPC with p62. Mutational binding analysis validated the structure and identified residues crucial for binding. TCR activity was markedly diminished in UVSSA-deficient cells expressing UVSSA mutated at Phe408 or Val411. Thus, a common TFIIH recruitment mechanism is shared by UVSSA in TCR and XPC in GGR.</description><subject>Amino Acid Sequence</subject><subject>Binding Sites - genetics</subject><subject>Carrier Proteins - chemistry</subject><subject>Carrier Proteins - genetics</subject><subject>Carrier Proteins - metabolism</subject><subject>DNA - genetics</subject><subject>DNA - metabolism</subject><subject>DNA Damage</subject><subject>DNA Repair</subject><subject>DNA-Binding Proteins - chemistry</subject><subject>DNA-Binding Proteins - genetics</subject><subject>DNA-Binding Proteins - metabolism</subject><subject>HEK293 Cells</subject><subject>Humans</subject><subject>Models, Molecular</subject><subject>Mutation</subject><subject>Protein Binding</subject><subject>Protein Domains</subject><subject>Sequence Homology, Amino Acid</subject><subject>Structural Biology</subject><subject>Transcription Factor TFIIH - chemistry</subject><subject>Transcription Factor TFIIH - genetics</subject><subject>Transcription Factor TFIIH - metabolism</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkU1LxDAQhoMo7rp68QdIjiJUJ036kYsgix8LC170HNM03Y02SU1aP_69ldVFcxnIPDwzw4vQMYFzApxeOBkuVi8fvIAdNCU0TxPG83QXTYFClhBg5QQdxPgMQBjJ2D6apBxyzgqYoqe5t9Y7_HCzWNzhoFUYTG-167HVai2diRYbh1etr2SLV9p5q7F0Ne6DdFEF0_XGu0T5oWt1PQo6aQKOQ9XJfv0uP-Mh2mtkG_XRT52hx5vrh_ldsry_XcyvlolijPVJWVDZlEVTpzzPM6ULpigoXvOyhiJjjdYNNFXO6PjPoWI6l1lGSKNSoJWqKzpDlxtvN1RW12o8IchWdMFYGT6Fl0b87zizFiv_JrIiLRgtR8HpjyD410HHXlgTlW5b6bQfoiA8ywmMLx3Rsw2qgo8x6GY7hoD4jkSMkYhNJCN88nexLfqbAf0Ce2uLbw</recordid><startdate>20171215</startdate><enddate>20171215</enddate><creator>Okuda, Masahiko</creator><creator>Nakazawa, Yuka</creator><creator>Guo, Chaowan</creator><creator>Ogi, Tomoo</creator><creator>Nishimura, Yoshifumi</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20171215</creationdate><title>Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways</title><author>Okuda, Masahiko ; Nakazawa, Yuka ; Guo, Chaowan ; Ogi, Tomoo ; Nishimura, Yoshifumi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c444t-873af87fd29665ce74c30c9d98d0754feef0fb6434c390b4e6a5511fc203bcdb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Amino Acid Sequence</topic><topic>Binding Sites - genetics</topic><topic>Carrier Proteins - chemistry</topic><topic>Carrier Proteins - genetics</topic><topic>Carrier Proteins - metabolism</topic><topic>DNA - genetics</topic><topic>DNA - metabolism</topic><topic>DNA Damage</topic><topic>DNA Repair</topic><topic>DNA-Binding Proteins - chemistry</topic><topic>DNA-Binding Proteins - genetics</topic><topic>DNA-Binding Proteins - metabolism</topic><topic>HEK293 Cells</topic><topic>Humans</topic><topic>Models, Molecular</topic><topic>Mutation</topic><topic>Protein Binding</topic><topic>Protein Domains</topic><topic>Sequence Homology, Amino Acid</topic><topic>Structural Biology</topic><topic>Transcription Factor TFIIH - chemistry</topic><topic>Transcription Factor TFIIH - genetics</topic><topic>Transcription Factor TFIIH - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Okuda, Masahiko</creatorcontrib><creatorcontrib>Nakazawa, Yuka</creatorcontrib><creatorcontrib>Guo, Chaowan</creatorcontrib><creatorcontrib>Ogi, Tomoo</creatorcontrib><creatorcontrib>Nishimura, Yoshifumi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Okuda, Masahiko</au><au>Nakazawa, Yuka</au><au>Guo, Chaowan</au><au>Ogi, Tomoo</au><au>Nishimura, Yoshifumi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2017-12-15</date><risdate>2017</risdate><volume>45</volume><issue>22</issue><spage>13043</spage><epage>13055</epage><pages>13043-13055</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><abstract>Nucleotide excision repair is initiated by two different damage recognition subpathways, global genome repair (GGR) and transcription-coupled repair (TCR). In GGR, XPC detects DNA lesions and recruits TFIIH via interaction with the pleckstrin homology (PH) domain of TFIIH subunit p62. In TCR, an elongating form of RNA Polymerase II detects a lesion on the transcribed strand and recruits TFIIH by an unknown mechanism. Here, we found that the TCR initiation factor UVSSA forms a stable complex with the PH domain of p62 via a short acidic string in the central region of UVSSA, and determined the complex structure by NMR. The acidic string of UVSSA binds strongly to the basic groove of the PH domain by inserting Phe408 and Val411 into two pockets, highly resembling the interaction mechanism of XPC with p62. Mutational binding analysis validated the structure and identified residues crucial for binding. TCR activity was markedly diminished in UVSSA-deficient cells expressing UVSSA mutated at Phe408 or Val411. Thus, a common TFIIH recruitment mechanism is shared by UVSSA in TCR and XPC in GGR.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>29069470</pmid><doi>10.1093/nar/gkx970</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence Binding Sites - genetics Carrier Proteins - chemistry Carrier Proteins - genetics Carrier Proteins - metabolism DNA - genetics DNA - metabolism DNA Damage DNA Repair DNA-Binding Proteins - chemistry DNA-Binding Proteins - genetics DNA-Binding Proteins - metabolism HEK293 Cells Humans Models, Molecular Mutation Protein Binding Protein Domains Sequence Homology, Amino Acid Structural Biology Transcription Factor TFIIH - chemistry Transcription Factor TFIIH - genetics Transcription Factor TFIIH - metabolism |
title | Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways |
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