Genetic polymorphisms and haplotypes of the DJ-1 gene promoter associated with the susceptibility to male infertility

Purpose In this study, we evaluate the relationship between genetic polymorphisms of the DJ-1 gene, g.-6_+10del, and g.168_185del with male infertility susceptibility. Methods Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed b...

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Veröffentlicht in:Journal of assisted reproduction and genetics 2017-12, Vol.34 (12), p.1673-1682
Hauptverfasser: Jahantigh, Danial, Hosseinzadeh Colagar, Abasalt, Salimi, Saeedeh
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creator Jahantigh, Danial
Hosseinzadeh Colagar, Abasalt
Salimi, Saeedeh
description Purpose In this study, we evaluate the relationship between genetic polymorphisms of the DJ-1 gene, g.-6_+10del, and g.168_185del with male infertility susceptibility. Methods Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed by polymerase chain reaction. In silico analysis was performed by EPD, ElemeNT, SNPnexus, and PROMO to predict the potential functions of rs901561484 and rs373653682 polymorphisms. Results The Del (D) allele carriers of DJ-1 g.-6_+10del polymorphism were significantly associated with the risk of male infertility in total infertile, asthenozoospermia, and oligoasthenozoospermia patients. Moreover, the Del (D) allele of DJ-1 g.-6_+10del polymorphism significantly increased in total male infertile, asthenozoospermia, and oligoasthenozoospermia groups. In addition, the frequencies of different genotypes and the Del allele and Dup allele carriers of DJ-1 g.168_185del gene polymorphisms were associated with male infertility in total infertile and four different sub-group patients. Furthermore, haplotype analysis of DJ-1 g.-6_+10del and g.168_185del polymorphisms revealed that the D-Dup and I-Del haplotype frequencies significantly increased the risk of male infertility, while I-Ins haplotypes were associated with a decreased risk of male infertility in total and sub-group patients. The in silico analysis showed that the presence of Ins and/or Dup alleles of the DJ-1 g.-6_+10del and g.168_185del polymorphisms could provide additional binding sites of more nuclear factors and probably affect transcriptional activity. Conclusion(s) Our study presents evidence of a strong association between functional polymorphisms of the DJ-1 promoter, g.-6_+10del, and g.168_185del with the risk of male infertility.
doi_str_mv 10.1007/s10815-017-1033-0
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Methods Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed by polymerase chain reaction. In silico analysis was performed by EPD, ElemeNT, SNPnexus, and PROMO to predict the potential functions of rs901561484 and rs373653682 polymorphisms. Results The Del (D) allele carriers of DJ-1 g.-6_+10del polymorphism were significantly associated with the risk of male infertility in total infertile, asthenozoospermia, and oligoasthenozoospermia patients. Moreover, the Del (D) allele of DJ-1 g.-6_+10del polymorphism significantly increased in total male infertile, asthenozoospermia, and oligoasthenozoospermia groups. In addition, the frequencies of different genotypes and the Del allele and Dup allele carriers of DJ-1 g.168_185del gene polymorphisms were associated with male infertility in total infertile and four different sub-group patients. Furthermore, haplotype analysis of DJ-1 g.-6_+10del and g.168_185del polymorphisms revealed that the D-Dup and I-Del haplotype frequencies significantly increased the risk of male infertility, while I-Ins haplotypes were associated with a decreased risk of male infertility in total and sub-group patients. The in silico analysis showed that the presence of Ins and/or Dup alleles of the DJ-1 g.-6_+10del and g.168_185del polymorphisms could provide additional binding sites of more nuclear factors and probably affect transcriptional activity. Conclusion(s) Our study presents evidence of a strong association between functional polymorphisms of the DJ-1 promoter, g.-6_+10del, and g.168_185del with the risk of male infertility.</description><identifier>ISSN: 1058-0468</identifier><identifier>EISSN: 1573-7330</identifier><identifier>DOI: 10.1007/s10815-017-1033-0</identifier><identifier>PMID: 28932933</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Alleles ; Gene polymorphism ; Genetics ; Genotypes ; Genotyping ; Gynecology ; Haplotypes ; Human Genetics ; Infertility ; Medicine ; Medicine &amp; Public Health ; PARK7 protein ; Polymerase chain reaction ; Polymorphism ; Reproductive Medicine ; Transcription factors</subject><ispartof>Journal of assisted reproduction and genetics, 2017-12, Vol.34 (12), p.1673-1682</ispartof><rights>Springer Science+Business Media, LLC 2017</rights><rights>Journal of Assisted Reproduction and Genetics is a copyright of Springer, (2017). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c470t-41b31016a58f58093dc337979636931a95ab85805cbcbc4ad8c11e36a1336a1e3</citedby><cites>FETCH-LOGICAL-c470t-41b31016a58f58093dc337979636931a95ab85805cbcbc4ad8c11e36a1336a1e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714825/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714825/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,41464,42533,51294,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28932933$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jahantigh, Danial</creatorcontrib><creatorcontrib>Hosseinzadeh Colagar, Abasalt</creatorcontrib><creatorcontrib>Salimi, Saeedeh</creatorcontrib><title>Genetic polymorphisms and haplotypes of the DJ-1 gene promoter associated with the susceptibility to male infertility</title><title>Journal of assisted reproduction and genetics</title><addtitle>J Assist Reprod Genet</addtitle><addtitle>J Assist Reprod Genet</addtitle><description>Purpose In this study, we evaluate the relationship between genetic polymorphisms of the DJ-1 gene, g.-6_+10del, and g.168_185del with male infertility susceptibility. Methods Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed by polymerase chain reaction. In silico analysis was performed by EPD, ElemeNT, SNPnexus, and PROMO to predict the potential functions of rs901561484 and rs373653682 polymorphisms. Results The Del (D) allele carriers of DJ-1 g.-6_+10del polymorphism were significantly associated with the risk of male infertility in total infertile, asthenozoospermia, and oligoasthenozoospermia patients. Moreover, the Del (D) allele of DJ-1 g.-6_+10del polymorphism significantly increased in total male infertile, asthenozoospermia, and oligoasthenozoospermia groups. In addition, the frequencies of different genotypes and the Del allele and Dup allele carriers of DJ-1 g.168_185del gene polymorphisms were associated with male infertility in total infertile and four different sub-group patients. Furthermore, haplotype analysis of DJ-1 g.-6_+10del and g.168_185del polymorphisms revealed that the D-Dup and I-Del haplotype frequencies significantly increased the risk of male infertility, while I-Ins haplotypes were associated with a decreased risk of male infertility in total and sub-group patients. The in silico analysis showed that the presence of Ins and/or Dup alleles of the DJ-1 g.-6_+10del and g.168_185del polymorphisms could provide additional binding sites of more nuclear factors and probably affect transcriptional activity. Conclusion(s) Our study presents evidence of a strong association between functional polymorphisms of the DJ-1 promoter, g.-6_+10del, and g.168_185del with the risk of male infertility.</description><subject>Alleles</subject><subject>Gene polymorphism</subject><subject>Genetics</subject><subject>Genotypes</subject><subject>Genotyping</subject><subject>Gynecology</subject><subject>Haplotypes</subject><subject>Human Genetics</subject><subject>Infertility</subject><subject>Medicine</subject><subject>Medicine &amp; Public Health</subject><subject>PARK7 protein</subject><subject>Polymerase chain reaction</subject><subject>Polymorphism</subject><subject>Reproductive Medicine</subject><subject>Transcription factors</subject><issn>1058-0468</issn><issn>1573-7330</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp1kdFr1TAUxoMobk7_AF8k4Isv1ZyepkleBJlzKgNf9DmkaXqb0TY1SZX73y93d44pSCA55Py-Lzl8hLwE9hYYE-8SMAm8YiAqYIgVe0ROgQusBCJ7XGrGZcWaVp6QZyldM8aUrPEpOamlwlohnpLt0i0ue0vXMO3nENfRpzlRs_R0NOsU8n51iYaB5tHRj18roLsioGsMc8guUpNSsN5k19PfPo-3WNqSdWv2nZ983tMc6GwmR_0yuJhv756TJ4OZkntxd56RH58uvp9_rq6-XX45_3BV2UawXDXQITBoDZcDl0xhbxGFEqrFViEYxU0nS4PbrqzG9NICOGwN4GFzeEbeH33XrZtdb92So5n0Gv1s4l4H4_XfncWPehd-aS6gkTUvBm_uDGL4ubmU9ezLcNNkFhe2pEE1gKIWXBb09T_oddjiUsYrlKhLLg02hYIjZWNIKbrh_jPA9CFUfQxVl1D1IVTNiubVwynuFX9SLEB9BFJpLTsXHzz9X9cbpRmuUw</recordid><startdate>20171201</startdate><enddate>20171201</enddate><creator>Jahantigh, Danial</creator><creator>Hosseinzadeh Colagar, Abasalt</creator><creator>Salimi, Saeedeh</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20171201</creationdate><title>Genetic polymorphisms and haplotypes of the DJ-1 gene promoter associated with the susceptibility to male infertility</title><author>Jahantigh, Danial ; 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Methods Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed by polymerase chain reaction. In silico analysis was performed by EPD, ElemeNT, SNPnexus, and PROMO to predict the potential functions of rs901561484 and rs373653682 polymorphisms. Results The Del (D) allele carriers of DJ-1 g.-6_+10del polymorphism were significantly associated with the risk of male infertility in total infertile, asthenozoospermia, and oligoasthenozoospermia patients. Moreover, the Del (D) allele of DJ-1 g.-6_+10del polymorphism significantly increased in total male infertile, asthenozoospermia, and oligoasthenozoospermia groups. In addition, the frequencies of different genotypes and the Del allele and Dup allele carriers of DJ-1 g.168_185del gene polymorphisms were associated with male infertility in total infertile and four different sub-group patients. Furthermore, haplotype analysis of DJ-1 g.-6_+10del and g.168_185del polymorphisms revealed that the D-Dup and I-Del haplotype frequencies significantly increased the risk of male infertility, while I-Ins haplotypes were associated with a decreased risk of male infertility in total and sub-group patients. The in silico analysis showed that the presence of Ins and/or Dup alleles of the DJ-1 g.-6_+10del and g.168_185del polymorphisms could provide additional binding sites of more nuclear factors and probably affect transcriptional activity. Conclusion(s) Our study presents evidence of a strong association between functional polymorphisms of the DJ-1 promoter, g.-6_+10del, and g.168_185del with the risk of male infertility.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>28932933</pmid><doi>10.1007/s10815-017-1033-0</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record>
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source Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; SpringerLink Journals - AutoHoldings
subjects Alleles
Gene polymorphism
Genetics
Genotypes
Genotyping
Gynecology
Haplotypes
Human Genetics
Infertility
Medicine
Medicine & Public Health
PARK7 protein
Polymerase chain reaction
Polymorphism
Reproductive Medicine
Transcription factors
title Genetic polymorphisms and haplotypes of the DJ-1 gene promoter associated with the susceptibility to male infertility
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