Genetic polymorphisms and haplotypes of the DJ-1 gene promoter associated with the susceptibility to male infertility
Purpose In this study, we evaluate the relationship between genetic polymorphisms of the DJ-1 gene, g.-6_+10del, and g.168_185del with male infertility susceptibility. Methods Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed b...
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creator | Jahantigh, Danial Hosseinzadeh Colagar, Abasalt Salimi, Saeedeh |
description | Purpose
In this study, we evaluate the relationship between genetic polymorphisms of the DJ-1 gene, g.-6_+10del, and g.168_185del with male infertility susceptibility.
Methods
Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed by polymerase chain reaction. In silico analysis was performed by EPD, ElemeNT, SNPnexus, and PROMO to predict the potential functions of rs901561484 and rs373653682 polymorphisms.
Results
The Del (D) allele carriers of DJ-1 g.-6_+10del polymorphism were significantly associated with the risk of male infertility in total infertile, asthenozoospermia, and oligoasthenozoospermia patients. Moreover, the Del (D) allele of DJ-1 g.-6_+10del polymorphism significantly increased in total male infertile, asthenozoospermia, and oligoasthenozoospermia groups. In addition, the frequencies of different genotypes and the Del allele and Dup allele carriers of DJ-1 g.168_185del gene polymorphisms were associated with male infertility in total infertile and four different sub-group patients. Furthermore, haplotype analysis of DJ-1 g.-6_+10del and g.168_185del polymorphisms revealed that the D-Dup and I-Del haplotype frequencies significantly increased the risk of male infertility, while I-Ins haplotypes were associated with a decreased risk of male infertility in total and sub-group patients. The in silico analysis showed that the presence of Ins and/or Dup alleles of the DJ-1 g.-6_+10del and g.168_185del polymorphisms could provide additional binding sites of more nuclear factors and probably affect transcriptional activity.
Conclusion(s)
Our study presents evidence of a strong association between functional polymorphisms of the DJ-1 promoter, g.-6_+10del, and g.168_185del with the risk of male infertility. |
doi_str_mv | 10.1007/s10815-017-1033-0 |
format | Article |
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In this study, we evaluate the relationship between genetic polymorphisms of the DJ-1 gene, g.-6_+10del, and g.168_185del with male infertility susceptibility.
Methods
Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed by polymerase chain reaction. In silico analysis was performed by EPD, ElemeNT, SNPnexus, and PROMO to predict the potential functions of rs901561484 and rs373653682 polymorphisms.
Results
The Del (D) allele carriers of DJ-1 g.-6_+10del polymorphism were significantly associated with the risk of male infertility in total infertile, asthenozoospermia, and oligoasthenozoospermia patients. Moreover, the Del (D) allele of DJ-1 g.-6_+10del polymorphism significantly increased in total male infertile, asthenozoospermia, and oligoasthenozoospermia groups. In addition, the frequencies of different genotypes and the Del allele and Dup allele carriers of DJ-1 g.168_185del gene polymorphisms were associated with male infertility in total infertile and four different sub-group patients. Furthermore, haplotype analysis of DJ-1 g.-6_+10del and g.168_185del polymorphisms revealed that the D-Dup and I-Del haplotype frequencies significantly increased the risk of male infertility, while I-Ins haplotypes were associated with a decreased risk of male infertility in total and sub-group patients. The in silico analysis showed that the presence of Ins and/or Dup alleles of the DJ-1 g.-6_+10del and g.168_185del polymorphisms could provide additional binding sites of more nuclear factors and probably affect transcriptional activity.
Conclusion(s)
Our study presents evidence of a strong association between functional polymorphisms of the DJ-1 promoter, g.-6_+10del, and g.168_185del with the risk of male infertility.</description><identifier>ISSN: 1058-0468</identifier><identifier>EISSN: 1573-7330</identifier><identifier>DOI: 10.1007/s10815-017-1033-0</identifier><identifier>PMID: 28932933</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Alleles ; Gene polymorphism ; Genetics ; Genotypes ; Genotyping ; Gynecology ; Haplotypes ; Human Genetics ; Infertility ; Medicine ; Medicine & Public Health ; PARK7 protein ; Polymerase chain reaction ; Polymorphism ; Reproductive Medicine ; Transcription factors</subject><ispartof>Journal of assisted reproduction and genetics, 2017-12, Vol.34 (12), p.1673-1682</ispartof><rights>Springer Science+Business Media, LLC 2017</rights><rights>Journal of Assisted Reproduction and Genetics is a copyright of Springer, (2017). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c470t-41b31016a58f58093dc337979636931a95ab85805cbcbc4ad8c11e36a1336a1e3</citedby><cites>FETCH-LOGICAL-c470t-41b31016a58f58093dc337979636931a95ab85805cbcbc4ad8c11e36a1336a1e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714825/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714825/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,41464,42533,51294,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28932933$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jahantigh, Danial</creatorcontrib><creatorcontrib>Hosseinzadeh Colagar, Abasalt</creatorcontrib><creatorcontrib>Salimi, Saeedeh</creatorcontrib><title>Genetic polymorphisms and haplotypes of the DJ-1 gene promoter associated with the susceptibility to male infertility</title><title>Journal of assisted reproduction and genetics</title><addtitle>J Assist Reprod Genet</addtitle><addtitle>J Assist Reprod Genet</addtitle><description>Purpose
In this study, we evaluate the relationship between genetic polymorphisms of the DJ-1 gene, g.-6_+10del, and g.168_185del with male infertility susceptibility.
Methods
Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed by polymerase chain reaction. In silico analysis was performed by EPD, ElemeNT, SNPnexus, and PROMO to predict the potential functions of rs901561484 and rs373653682 polymorphisms.
Results
The Del (D) allele carriers of DJ-1 g.-6_+10del polymorphism were significantly associated with the risk of male infertility in total infertile, asthenozoospermia, and oligoasthenozoospermia patients. Moreover, the Del (D) allele of DJ-1 g.-6_+10del polymorphism significantly increased in total male infertile, asthenozoospermia, and oligoasthenozoospermia groups. In addition, the frequencies of different genotypes and the Del allele and Dup allele carriers of DJ-1 g.168_185del gene polymorphisms were associated with male infertility in total infertile and four different sub-group patients. Furthermore, haplotype analysis of DJ-1 g.-6_+10del and g.168_185del polymorphisms revealed that the D-Dup and I-Del haplotype frequencies significantly increased the risk of male infertility, while I-Ins haplotypes were associated with a decreased risk of male infertility in total and sub-group patients. The in silico analysis showed that the presence of Ins and/or Dup alleles of the DJ-1 g.-6_+10del and g.168_185del polymorphisms could provide additional binding sites of more nuclear factors and probably affect transcriptional activity.
Conclusion(s)
Our study presents evidence of a strong association between functional polymorphisms of the DJ-1 promoter, g.-6_+10del, and g.168_185del with the risk of male infertility.</description><subject>Alleles</subject><subject>Gene polymorphism</subject><subject>Genetics</subject><subject>Genotypes</subject><subject>Genotyping</subject><subject>Gynecology</subject><subject>Haplotypes</subject><subject>Human Genetics</subject><subject>Infertility</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>PARK7 protein</subject><subject>Polymerase chain reaction</subject><subject>Polymorphism</subject><subject>Reproductive Medicine</subject><subject>Transcription factors</subject><issn>1058-0468</issn><issn>1573-7330</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp1kdFr1TAUxoMobk7_AF8k4Isv1ZyepkleBJlzKgNf9DmkaXqb0TY1SZX73y93d44pSCA55Py-Lzl8hLwE9hYYE-8SMAm8YiAqYIgVe0ROgQusBCJ7XGrGZcWaVp6QZyldM8aUrPEpOamlwlohnpLt0i0ue0vXMO3nENfRpzlRs_R0NOsU8n51iYaB5tHRj18roLsioGsMc8guUpNSsN5k19PfPo-3WNqSdWv2nZ983tMc6GwmR_0yuJhv756TJ4OZkntxd56RH58uvp9_rq6-XX45_3BV2UawXDXQITBoDZcDl0xhbxGFEqrFViEYxU0nS4PbrqzG9NICOGwN4GFzeEbeH33XrZtdb92So5n0Gv1s4l4H4_XfncWPehd-aS6gkTUvBm_uDGL4ubmU9ezLcNNkFhe2pEE1gKIWXBb09T_oddjiUsYrlKhLLg02hYIjZWNIKbrh_jPA9CFUfQxVl1D1IVTNiubVwynuFX9SLEB9BFJpLTsXHzz9X9cbpRmuUw</recordid><startdate>20171201</startdate><enddate>20171201</enddate><creator>Jahantigh, Danial</creator><creator>Hosseinzadeh Colagar, Abasalt</creator><creator>Salimi, Saeedeh</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20171201</creationdate><title>Genetic polymorphisms and haplotypes of the DJ-1 gene promoter associated with the susceptibility to male infertility</title><author>Jahantigh, Danial ; Hosseinzadeh Colagar, Abasalt ; Salimi, Saeedeh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c470t-41b31016a58f58093dc337979636931a95ab85805cbcbc4ad8c11e36a1336a1e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Alleles</topic><topic>Gene polymorphism</topic><topic>Genetics</topic><topic>Genotypes</topic><topic>Genotyping</topic><topic>Gynecology</topic><topic>Haplotypes</topic><topic>Human Genetics</topic><topic>Infertility</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>PARK7 protein</topic><topic>Polymerase chain reaction</topic><topic>Polymorphism</topic><topic>Reproductive Medicine</topic><topic>Transcription factors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jahantigh, Danial</creatorcontrib><creatorcontrib>Hosseinzadeh Colagar, Abasalt</creatorcontrib><creatorcontrib>Salimi, Saeedeh</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>ProQuest Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of assisted reproduction and genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jahantigh, Danial</au><au>Hosseinzadeh Colagar, Abasalt</au><au>Salimi, Saeedeh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic polymorphisms and haplotypes of the DJ-1 gene promoter associated with the susceptibility to male infertility</atitle><jtitle>Journal of assisted reproduction and genetics</jtitle><stitle>J Assist Reprod Genet</stitle><addtitle>J Assist Reprod Genet</addtitle><date>2017-12-01</date><risdate>2017</risdate><volume>34</volume><issue>12</issue><spage>1673</spage><epage>1682</epage><pages>1673-1682</pages><issn>1058-0468</issn><eissn>1573-7330</eissn><abstract>Purpose
In this study, we evaluate the relationship between genetic polymorphisms of the DJ-1 gene, g.-6_+10del, and g.168_185del with male infertility susceptibility.
Methods
Four hundred and twenty-two male infertile patients and 285 fertile male controls were recruited. Genotyping was performed by polymerase chain reaction. In silico analysis was performed by EPD, ElemeNT, SNPnexus, and PROMO to predict the potential functions of rs901561484 and rs373653682 polymorphisms.
Results
The Del (D) allele carriers of DJ-1 g.-6_+10del polymorphism were significantly associated with the risk of male infertility in total infertile, asthenozoospermia, and oligoasthenozoospermia patients. Moreover, the Del (D) allele of DJ-1 g.-6_+10del polymorphism significantly increased in total male infertile, asthenozoospermia, and oligoasthenozoospermia groups. In addition, the frequencies of different genotypes and the Del allele and Dup allele carriers of DJ-1 g.168_185del gene polymorphisms were associated with male infertility in total infertile and four different sub-group patients. Furthermore, haplotype analysis of DJ-1 g.-6_+10del and g.168_185del polymorphisms revealed that the D-Dup and I-Del haplotype frequencies significantly increased the risk of male infertility, while I-Ins haplotypes were associated with a decreased risk of male infertility in total and sub-group patients. The in silico analysis showed that the presence of Ins and/or Dup alleles of the DJ-1 g.-6_+10del and g.168_185del polymorphisms could provide additional binding sites of more nuclear factors and probably affect transcriptional activity.
Conclusion(s)
Our study presents evidence of a strong association between functional polymorphisms of the DJ-1 promoter, g.-6_+10del, and g.168_185del with the risk of male infertility.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>28932933</pmid><doi>10.1007/s10815-017-1033-0</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Alleles Gene polymorphism Genetics Genotypes Genotyping Gynecology Haplotypes Human Genetics Infertility Medicine Medicine & Public Health PARK7 protein Polymerase chain reaction Polymorphism Reproductive Medicine Transcription factors |
title | Genetic polymorphisms and haplotypes of the DJ-1 gene promoter associated with the susceptibility to male infertility |
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