An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma

MicroRNA (miR)-19a, as an oncomiR, has been studied in several types of cancer; however, its role in the development and progression of multiple myeloma (MM) remains unclear. The present study used a bioinformatics approach to investigate the involvement of miR-19a in MM. miR-19a targets were predic...

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Veröffentlicht in:Experimental and therapeutic medicine 2017-11, Vol.14 (5), p.4711-4720
Hauptverfasser: Lv, Hongyan, Wu, Xianda, Ma, Guiru, Sun, Lixia, Meng, Jianbo, Song, Xiaoning, Zhang, Jinqiao
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container_end_page 4720
container_issue 5
container_start_page 4711
container_title Experimental and therapeutic medicine
container_volume 14
creator Lv, Hongyan
Wu, Xianda
Ma, Guiru
Sun, Lixia
Meng, Jianbo
Song, Xiaoning
Zhang, Jinqiao
description MicroRNA (miR)-19a, as an oncomiR, has been studied in several types of cancer; however, its role in the development and progression of multiple myeloma (MM) remains unclear. The present study used a bioinformatics approach to investigate the involvement of miR-19a in MM. miR-19a targets were predicted using target prediction programs, followed by screening for differentially expressed genes in MM. The function of these genes was then annotated using gene ontology term enrichment, signaling pathway enrichment and protein-protein interaction (PPI) analysis. In addition, natural language processing (NLP) was performed to identify genes associated with MM. A total of 715 putative targets of miR-19a were identified in the present study, of which 40 were experimentally validated. A total of 121 genes were identified to be differentially expressed in MM, including 80 upregulated genes and 41 downregulated genes. Among the differentially expressed genes, ras homolog family member B, clathrin heavy chain, prosaposin and protein phosphatase 6 regulatory subunit 2 were predicted target genes of miR-19a. The results of NLP revealed that 2 of the differentially expressed genes, Y-box binding protein 1 and TP53 regulated inhibitor of apoptosis 1, were reported to be associated with MM. In addition, 41 target genes of miR-19a were identified to be associated with the development and progression of MM. These results may aid in understanding the molecular mechanisms of miR-19a in the development and progression of MM. In addition, the results of the present study indicate that targets genes of miR-19a are potential candidate biomarkers for MM.
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The present study used a bioinformatics approach to investigate the involvement of miR-19a in MM. miR-19a targets were predicted using target prediction programs, followed by screening for differentially expressed genes in MM. The function of these genes was then annotated using gene ontology term enrichment, signaling pathway enrichment and protein-protein interaction (PPI) analysis. In addition, natural language processing (NLP) was performed to identify genes associated with MM. A total of 715 putative targets of miR-19a were identified in the present study, of which 40 were experimentally validated. A total of 121 genes were identified to be differentially expressed in MM, including 80 upregulated genes and 41 downregulated genes. Among the differentially expressed genes, ras homolog family member B, clathrin heavy chain, prosaposin and protein phosphatase 6 regulatory subunit 2 were predicted target genes of miR-19a. The results of NLP revealed that 2 of the differentially expressed genes, Y-box binding protein 1 and TP53 regulated inhibitor of apoptosis 1, were reported to be associated with MM. In addition, 41 target genes of miR-19a were identified to be associated with the development and progression of MM. These results may aid in understanding the molecular mechanisms of miR-19a in the development and progression of MM. 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The results of NLP revealed that 2 of the differentially expressed genes, Y-box binding protein 1 and TP53 regulated inhibitor of apoptosis 1, were reported to be associated with MM. In addition, 41 target genes of miR-19a were identified to be associated with the development and progression of MM. These results may aid in understanding the molecular mechanisms of miR-19a in the development and progression of MM. In addition, the results of the present study indicate that targets genes of miR-19a are potential candidate biomarkers for MM.</abstract><cop>Greece</cop><pub>Spandidos Publications</pub><pmid>29201171</pmid><doi>10.3892/etm.2017.5173</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record>
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subjects Cancer
Care and treatment
Computational biology
Cytokines
Development and progression
Encyclopedias
Gene expression
Genetic aspects
Genomes
Health aspects
Insulin-like growth factors
Kinases
Leukemia
Methods
MicroRNA
Multiple myeloma
Pathogenesis
Proteins
Rodents
Studies
title An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma
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