Accurate thermal conductivities from optimally short molecular dynamics simulations
The evaluation of transport coefficients in extended systems, such as thermal conductivity or shear viscosity, is known to require impractically long simulations, thus calling for a paradigm shift that would allow to deploy state-of-the-art quantum simulation methods. We introduce a new method to co...
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description | The evaluation of transport coefficients in extended systems, such as thermal conductivity or shear viscosity, is known to require impractically long simulations, thus calling for a paradigm shift that would allow to deploy state-of-the-art quantum simulation methods. We introduce a new method to compute these coefficients from optimally short molecular dynamics simulations, based on the Green-Kubo theory of linear response and the cepstral analysis of time series. Information from the
full
sample power spectrum of the relevant current for a
single
and relatively short trajectory is leveraged to evaluate and optimally reduce the noise affecting its zero-frequency value, whose expectation is proportional to the corresponding conductivity. Our method is unbiased and consistent, in that both the resulting bias and statistical error can be made arbitrarily small in the long-time limit. A simple data-analysis protocol is proposed and validated with the calculation of thermal conductivities in the paradigmatic cases of elemental and molecular fluids (liquid Ar and H
2
O) and of crystalline and glassy solids (MgO and a-SiO
2
). We find that simulation times of one to a few hundred picoseconds are sufficient in these systems to achieve an accuracy of the order of 10% on the estimated thermal conductivities. |
doi_str_mv | 10.1038/s41598-017-15843-2 |
format | Article |
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full
sample power spectrum of the relevant current for a
single
and relatively short trajectory is leveraged to evaluate and optimally reduce the noise affecting its zero-frequency value, whose expectation is proportional to the corresponding conductivity. Our method is unbiased and consistent, in that both the resulting bias and statistical error can be made arbitrarily small in the long-time limit. A simple data-analysis protocol is proposed and validated with the calculation of thermal conductivities in the paradigmatic cases of elemental and molecular fluids (liquid Ar and H
2
O) and of crystalline and glassy solids (MgO and a-SiO
2
). We find that simulation times of one to a few hundred picoseconds are sufficient in these systems to achieve an accuracy of the order of 10% on the estimated thermal conductivities.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-017-15843-2</identifier><identifier>PMID: 29158529</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>119/118 ; 639/301/1034/1037 ; 639/766/119 ; 639/766/259 ; 639/766/530/2804 ; Data processing ; Humanities and Social Sciences ; multidisciplinary ; Noise reduction ; Science ; Science (multidisciplinary) ; Simulation ; Thermal conductivity ; Viscosity</subject><ispartof>Scientific reports, 2017-11, Vol.7 (1), p.15835-11, Article 15835</ispartof><rights>The Author(s) 2017</rights><rights>2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c474t-36406bf9dda975816e7f9809d5a744d530894ff04f779efb02e3796014e90fd53</citedby><cites>FETCH-LOGICAL-c474t-36406bf9dda975816e7f9809d5a744d530894ff04f779efb02e3796014e90fd53</cites><orcidid>0000-0002-8089-9524</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5696481/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5696481/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27915,27916,41111,42180,51567,53782,53784</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29158529$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ercole, Loris</creatorcontrib><creatorcontrib>Marcolongo, Aris</creatorcontrib><creatorcontrib>Baroni, Stefano</creatorcontrib><title>Accurate thermal conductivities from optimally short molecular dynamics simulations</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>The evaluation of transport coefficients in extended systems, such as thermal conductivity or shear viscosity, is known to require impractically long simulations, thus calling for a paradigm shift that would allow to deploy state-of-the-art quantum simulation methods. We introduce a new method to compute these coefficients from optimally short molecular dynamics simulations, based on the Green-Kubo theory of linear response and the cepstral analysis of time series. Information from the
full
sample power spectrum of the relevant current for a
single
and relatively short trajectory is leveraged to evaluate and optimally reduce the noise affecting its zero-frequency value, whose expectation is proportional to the corresponding conductivity. Our method is unbiased and consistent, in that both the resulting bias and statistical error can be made arbitrarily small in the long-time limit. A simple data-analysis protocol is proposed and validated with the calculation of thermal conductivities in the paradigmatic cases of elemental and molecular fluids (liquid Ar and H
2
O) and of crystalline and glassy solids (MgO and a-SiO
2
). 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Marcolongo, Aris ; Baroni, Stefano</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c474t-36406bf9dda975816e7f9809d5a744d530894ff04f779efb02e3796014e90fd53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>119/118</topic><topic>639/301/1034/1037</topic><topic>639/766/119</topic><topic>639/766/259</topic><topic>639/766/530/2804</topic><topic>Data processing</topic><topic>Humanities and Social Sciences</topic><topic>multidisciplinary</topic><topic>Noise reduction</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Simulation</topic><topic>Thermal conductivity</topic><topic>Viscosity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ercole, Loris</creatorcontrib><creatorcontrib>Marcolongo, Aris</creatorcontrib><creatorcontrib>Baroni, Stefano</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ercole, Loris</au><au>Marcolongo, Aris</au><au>Baroni, Stefano</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Accurate thermal conductivities from optimally short molecular dynamics simulations</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2017-11-20</date><risdate>2017</risdate><volume>7</volume><issue>1</issue><spage>15835</spage><epage>11</epage><pages>15835-11</pages><artnum>15835</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>The evaluation of transport coefficients in extended systems, such as thermal conductivity or shear viscosity, is known to require impractically long simulations, thus calling for a paradigm shift that would allow to deploy state-of-the-art quantum simulation methods. We introduce a new method to compute these coefficients from optimally short molecular dynamics simulations, based on the Green-Kubo theory of linear response and the cepstral analysis of time series. Information from the
full
sample power spectrum of the relevant current for a
single
and relatively short trajectory is leveraged to evaluate and optimally reduce the noise affecting its zero-frequency value, whose expectation is proportional to the corresponding conductivity. Our method is unbiased and consistent, in that both the resulting bias and statistical error can be made arbitrarily small in the long-time limit. A simple data-analysis protocol is proposed and validated with the calculation of thermal conductivities in the paradigmatic cases of elemental and molecular fluids (liquid Ar and H
2
O) and of crystalline and glassy solids (MgO and a-SiO
2
). We find that simulation times of one to a few hundred picoseconds are sufficient in these systems to achieve an accuracy of the order of 10% on the estimated thermal conductivities.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>29158529</pmid><doi>10.1038/s41598-017-15843-2</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-8089-9524</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 119/118 639/301/1034/1037 639/766/119 639/766/259 639/766/530/2804 Data processing Humanities and Social Sciences multidisciplinary Noise reduction Science Science (multidisciplinary) Simulation Thermal conductivity Viscosity |
title | Accurate thermal conductivities from optimally short molecular dynamics simulations |
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