Molecular alterations in colorectal adenomas and intramucosal adenocarcinomas defined by high-density single-nucleotide polymorphism arrays

Background We examined colorectal adenomas and intramucosal adenocarcinomas (IMAs) to develop a genome-wide overview of copy number alterations (CNAs) during colorectal tumorigenesis. Methods We analysed CNAs using a high-resolution SNP array of isolated tumour glands obtained from 55 colorectal ade...

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Veröffentlicht in:Journal of gastroenterology 2017-11, Vol.52 (11), p.1158-1168
Hauptverfasser: Eizuka, Makoto, Sugai, Tamotsu, Habano, Wataru, Uesugi, Noriyuki, Takahashi, Yayoi, Kawasaki, Keisuke, Yamamoto, Eiichiro, Suzuki, Hiromu, Matsumoto, Takayuki
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container_end_page 1168
container_issue 11
container_start_page 1158
container_title Journal of gastroenterology
container_volume 52
creator Eizuka, Makoto
Sugai, Tamotsu
Habano, Wataru
Uesugi, Noriyuki
Takahashi, Yayoi
Kawasaki, Keisuke
Yamamoto, Eiichiro
Suzuki, Hiromu
Matsumoto, Takayuki
description Background We examined colorectal adenomas and intramucosal adenocarcinomas (IMAs) to develop a genome-wide overview of copy number alterations (CNAs) during colorectal tumorigenesis. Methods We analysed CNAs using a high-resolution SNP array of isolated tumour glands obtained from 55 colorectal adenomas (35 low-grade adenomas and 20 high-grade adenomas) and 30 IMAs. Next, we examined whether frequent CNAs differed between low-grade and high-grade adenomas or high-grade adenomas and IMAs. Finally, we investigated the total lengths of the CNAs in low-grade adenomas, high-grade adenomas, and IMAs. Results Although no frequent CNAs were found in low-grade adenomas, the most frequent alterations of high-grade adenomas were gains of 7q11, 7q21 and 9p13 and loss of 5q14.3-35. High levels of gains were detected at 13q, 7q, 8p, 20q, 7p, 18p and 17p in IMAs. Although no frequent alteration differed between low-grade and high-grade adenomas, significant differences of gains at 13q, 17p and 18p were found between high-grade adenoma and IMAs. Although the total lengths of all CNAs (gains and losses), copy number gains, and losses of heterozygosity were significantly greater in high-grade adenomas than in low-grade adenomas, no significant differences in the lengths of CNAs were found between high-grade adenomas and IMAs. Conclusions Genomic alterations play an essential role in early colorectal carcinogenesis. CNAs in colorectal tumours provide new insights for evaluation of colorectal tumorigenesis.
doi_str_mv 10.1007/s00535-017-1317-2
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Methods We analysed CNAs using a high-resolution SNP array of isolated tumour glands obtained from 55 colorectal adenomas (35 low-grade adenomas and 20 high-grade adenomas) and 30 IMAs. Next, we examined whether frequent CNAs differed between low-grade and high-grade adenomas or high-grade adenomas and IMAs. Finally, we investigated the total lengths of the CNAs in low-grade adenomas, high-grade adenomas, and IMAs. Results Although no frequent CNAs were found in low-grade adenomas, the most frequent alterations of high-grade adenomas were gains of 7q11, 7q21 and 9p13 and loss of 5q14.3-35. High levels of gains were detected at 13q, 7q, 8p, 20q, 7p, 18p and 17p in IMAs. Although no frequent alteration differed between low-grade and high-grade adenomas, significant differences of gains at 13q, 17p and 18p were found between high-grade adenoma and IMAs. Although the total lengths of all CNAs (gains and losses), copy number gains, and losses of heterozygosity were significantly greater in high-grade adenomas than in low-grade adenomas, no significant differences in the lengths of CNAs were found between high-grade adenomas and IMAs. Conclusions Genomic alterations play an essential role in early colorectal carcinogenesis. CNAs in colorectal tumours provide new insights for evaluation of colorectal tumorigenesis.</description><identifier>ISSN: 0944-1174</identifier><identifier>EISSN: 1435-5922</identifier><identifier>DOI: 10.1007/s00535-017-1317-2</identifier><identifier>PMID: 28197804</identifier><language>eng</language><publisher>Tokyo: Springer Japan</publisher><subject>Abdominal Surgery ; Adenocarcinoma - genetics ; Adenocarcinoma - pathology ; Adenoma ; Adenoma - genetics ; Adenoma - pathology ; Adult ; Aged ; Aged, 80 and over ; Carcinogenesis ; Colorectal cancer ; Colorectal Neoplasms - genetics ; Colorectal Neoplasms - pathology ; Colorectal Surgery ; Copy number ; DNA Copy Number Variations - genetics ; Female ; Gastroenterology ; Genetic aspects ; Genome, Human ; Genomes ; Genomics ; Glands ; Hepatology ; Heterozygosity ; Humans ; Male ; Medical colleges ; Medicine ; Medicine &amp; Public Health ; Middle Aged ; Neoplasm Grading ; Original Article—Alimentary Tract ; Original —Alimentary Tract ; Polymorphism ; Polymorphism, Single Nucleotide ; Single nucleotide polymorphisms ; Single-nucleotide polymorphism ; Surgical Oncology ; Tumorigenesis ; Tumors</subject><ispartof>Journal of gastroenterology, 2017-11, Vol.52 (11), p.1158-1168</ispartof><rights>The Author(s) 2017</rights><rights>COPYRIGHT 2017 Springer</rights><rights>Journal of Gastroenterology is a copyright of Springer, 2017.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c561t-80f3ccc11adfbb100e49b5ce14de998575bac54303af934e63c414c44cef9c403</citedby><cites>FETCH-LOGICAL-c561t-80f3ccc11adfbb100e49b5ce14de998575bac54303af934e63c414c44cef9c403</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00535-017-1317-2$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00535-017-1317-2$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,27903,27904,41467,42536,51297</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28197804$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Eizuka, Makoto</creatorcontrib><creatorcontrib>Sugai, Tamotsu</creatorcontrib><creatorcontrib>Habano, Wataru</creatorcontrib><creatorcontrib>Uesugi, Noriyuki</creatorcontrib><creatorcontrib>Takahashi, Yayoi</creatorcontrib><creatorcontrib>Kawasaki, Keisuke</creatorcontrib><creatorcontrib>Yamamoto, Eiichiro</creatorcontrib><creatorcontrib>Suzuki, Hiromu</creatorcontrib><creatorcontrib>Matsumoto, Takayuki</creatorcontrib><title>Molecular alterations in colorectal adenomas and intramucosal adenocarcinomas defined by high-density single-nucleotide polymorphism arrays</title><title>Journal of gastroenterology</title><addtitle>J Gastroenterol</addtitle><addtitle>J Gastroenterol</addtitle><description>Background We examined colorectal adenomas and intramucosal adenocarcinomas (IMAs) to develop a genome-wide overview of copy number alterations (CNAs) during colorectal tumorigenesis. Methods We analysed CNAs using a high-resolution SNP array of isolated tumour glands obtained from 55 colorectal adenomas (35 low-grade adenomas and 20 high-grade adenomas) and 30 IMAs. Next, we examined whether frequent CNAs differed between low-grade and high-grade adenomas or high-grade adenomas and IMAs. Finally, we investigated the total lengths of the CNAs in low-grade adenomas, high-grade adenomas, and IMAs. Results Although no frequent CNAs were found in low-grade adenomas, the most frequent alterations of high-grade adenomas were gains of 7q11, 7q21 and 9p13 and loss of 5q14.3-35. High levels of gains were detected at 13q, 7q, 8p, 20q, 7p, 18p and 17p in IMAs. Although no frequent alteration differed between low-grade and high-grade adenomas, significant differences of gains at 13q, 17p and 18p were found between high-grade adenoma and IMAs. Although the total lengths of all CNAs (gains and losses), copy number gains, and losses of heterozygosity were significantly greater in high-grade adenomas than in low-grade adenomas, no significant differences in the lengths of CNAs were found between high-grade adenomas and IMAs. Conclusions Genomic alterations play an essential role in early colorectal carcinogenesis. CNAs in colorectal tumours provide new insights for evaluation of colorectal tumorigenesis.</description><subject>Abdominal Surgery</subject><subject>Adenocarcinoma - genetics</subject><subject>Adenocarcinoma - pathology</subject><subject>Adenoma</subject><subject>Adenoma - genetics</subject><subject>Adenoma - pathology</subject><subject>Adult</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Carcinogenesis</subject><subject>Colorectal cancer</subject><subject>Colorectal Neoplasms - genetics</subject><subject>Colorectal Neoplasms - pathology</subject><subject>Colorectal Surgery</subject><subject>Copy number</subject><subject>DNA Copy Number Variations - genetics</subject><subject>Female</subject><subject>Gastroenterology</subject><subject>Genetic aspects</subject><subject>Genome, Human</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Glands</subject><subject>Hepatology</subject><subject>Heterozygosity</subject><subject>Humans</subject><subject>Male</subject><subject>Medical colleges</subject><subject>Medicine</subject><subject>Medicine &amp; Public Health</subject><subject>Middle Aged</subject><subject>Neoplasm Grading</subject><subject>Original Article—Alimentary Tract</subject><subject>Original —Alimentary Tract</subject><subject>Polymorphism</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Single nucleotide polymorphisms</subject><subject>Single-nucleotide polymorphism</subject><subject>Surgical Oncology</subject><subject>Tumorigenesis</subject><subject>Tumors</subject><issn>0944-1174</issn><issn>1435-5922</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><recordid>eNp1Ul1r1jAULqK41-kP8EYK3uymM6dN2uZGGMOpMPFGr0N6evq-GWnymrRCf4N_2pRucxMlkMB5PsJzeLLsNbBzYKx5FxkTlSgYNAVU6SqfZDvgaSJkWT7NdkxyXgA0_CR7EeMNY1Ax0T7PTsoWZNMyvst-ffGWcLY65NpOFPRkvIu5cTl66wPhpG2ue3J-1DHXrk_QFPQ4o493COqAZiP0NBhHfd4t-cHsD0WCo5mWPBq3t1S4GS35yfSUH71dRh-OBxPHXIegl_gyezZoG-nV7Xuafb_68O3yU3H99ePny4vrAkUNU9GyoUJEAN0PXZcWQVx2Agl4T1K2ohGdRsErVulBVpzqCjlw5BxpkMhZdZq933yPczdSj7QmsuoYzKjDorw26jHizEHt_U8l6rpmTZ0Mzm4Ngv8xU5zUaCKStdqRn6OCtm5rWTctJOrbv6g3fg4uxVMghQQBJRd_WHttSRk3-PQvrqbqogEu2oqL1ev8H6x0ehoNepd2n-aPBLAJMPgYAw33GYGptUFqa5BKDVJrg1SZNG8eLudecVeZRCg3QkyQ21N4kOi_rr8BNpvUkg</recordid><startdate>20171101</startdate><enddate>20171101</enddate><creator>Eizuka, Makoto</creator><creator>Sugai, Tamotsu</creator><creator>Habano, Wataru</creator><creator>Uesugi, Noriyuki</creator><creator>Takahashi, Yayoi</creator><creator>Kawasaki, Keisuke</creator><creator>Yamamoto, Eiichiro</creator><creator>Suzuki, Hiromu</creator><creator>Matsumoto, Takayuki</creator><general>Springer Japan</general><general>Springer</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7T5</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9-</scope><scope>K9.</scope><scope>KB0</scope><scope>M0R</scope><scope>M0S</scope><scope>M1P</scope><scope>NAPCQ</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20171101</creationdate><title>Molecular alterations in colorectal adenomas and intramucosal adenocarcinomas defined by high-density single-nucleotide polymorphism arrays</title><author>Eizuka, Makoto ; 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Public Health</topic><topic>Middle Aged</topic><topic>Neoplasm Grading</topic><topic>Original Article—Alimentary Tract</topic><topic>Original —Alimentary Tract</topic><topic>Polymorphism</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Single nucleotide polymorphisms</topic><topic>Single-nucleotide polymorphism</topic><topic>Surgical Oncology</topic><topic>Tumorigenesis</topic><topic>Tumors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Eizuka, Makoto</creatorcontrib><creatorcontrib>Sugai, Tamotsu</creatorcontrib><creatorcontrib>Habano, Wataru</creatorcontrib><creatorcontrib>Uesugi, Noriyuki</creatorcontrib><creatorcontrib>Takahashi, Yayoi</creatorcontrib><creatorcontrib>Kawasaki, Keisuke</creatorcontrib><creatorcontrib>Yamamoto, Eiichiro</creatorcontrib><creatorcontrib>Suzuki, Hiromu</creatorcontrib><creatorcontrib>Matsumoto, Takayuki</creatorcontrib><collection>Springer Nature OA/Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nursing &amp; 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Methods We analysed CNAs using a high-resolution SNP array of isolated tumour glands obtained from 55 colorectal adenomas (35 low-grade adenomas and 20 high-grade adenomas) and 30 IMAs. Next, we examined whether frequent CNAs differed between low-grade and high-grade adenomas or high-grade adenomas and IMAs. Finally, we investigated the total lengths of the CNAs in low-grade adenomas, high-grade adenomas, and IMAs. Results Although no frequent CNAs were found in low-grade adenomas, the most frequent alterations of high-grade adenomas were gains of 7q11, 7q21 and 9p13 and loss of 5q14.3-35. High levels of gains were detected at 13q, 7q, 8p, 20q, 7p, 18p and 17p in IMAs. Although no frequent alteration differed between low-grade and high-grade adenomas, significant differences of gains at 13q, 17p and 18p were found between high-grade adenoma and IMAs. Although the total lengths of all CNAs (gains and losses), copy number gains, and losses of heterozygosity were significantly greater in high-grade adenomas than in low-grade adenomas, no significant differences in the lengths of CNAs were found between high-grade adenomas and IMAs. Conclusions Genomic alterations play an essential role in early colorectal carcinogenesis. CNAs in colorectal tumours provide new insights for evaluation of colorectal tumorigenesis.</abstract><cop>Tokyo</cop><pub>Springer Japan</pub><pmid>28197804</pmid><doi>10.1007/s00535-017-1317-2</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record>
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subjects Abdominal Surgery
Adenocarcinoma - genetics
Adenocarcinoma - pathology
Adenoma
Adenoma - genetics
Adenoma - pathology
Adult
Aged
Aged, 80 and over
Carcinogenesis
Colorectal cancer
Colorectal Neoplasms - genetics
Colorectal Neoplasms - pathology
Colorectal Surgery
Copy number
DNA Copy Number Variations - genetics
Female
Gastroenterology
Genetic aspects
Genome, Human
Genomes
Genomics
Glands
Hepatology
Heterozygosity
Humans
Male
Medical colleges
Medicine
Medicine & Public Health
Middle Aged
Neoplasm Grading
Original Article—Alimentary Tract
Original —Alimentary Tract
Polymorphism
Polymorphism, Single Nucleotide
Single nucleotide polymorphisms
Single-nucleotide polymorphism
Surgical Oncology
Tumorigenesis
Tumors
title Molecular alterations in colorectal adenomas and intramucosal adenocarcinomas defined by high-density single-nucleotide polymorphism arrays
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