Chromosome Evolution in Connection with Repetitive Sequences and Epigenetics in Plants
Chromosome evolution is a fundamental aspect of evolutionary biology. The evolution of chromosome size, structure and shape, number, and the change in DNA composition suggest the high plasticity of nuclear genomes at the chromosomal level. Repetitive DNA sequences, which represent a conspicuous frac...
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| Veröffentlicht in: | Genes 2017-10, Vol.8 (10), p.290 |
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| creator | Li, Shu-Fen Su, Ting Cheng, Guang-Qian Wang, Bing-Xiao Li, Xu Deng, Chuan-Liang Gao, Wu-Jun |
| description | Chromosome evolution is a fundamental aspect of evolutionary biology. The evolution of chromosome size, structure and shape, number, and the change in DNA composition suggest the high plasticity of nuclear genomes at the chromosomal level. Repetitive DNA sequences, which represent a conspicuous fraction of every eukaryotic genome, particularly in plants, are found to be tightly linked with plant chromosome evolution. Different classes of repetitive sequences have distinct distribution patterns on the chromosomes. Mounting evidence shows that repetitive sequences may play multiple generative roles in shaping the chromosome karyotypes in plants. Furthermore, recent development in our understanding of the repetitive sequences and plant chromosome evolution has elucidated the involvement of a spectrum of epigenetic modification. In this review, we focused on the recent evidence relating to the distribution pattern of repetitive sequences in plant chromosomes and highlighted their potential relevance to chromosome evolution in plants. We also discussed the possible connections between evolution and epigenetic alterations in chromosome structure and repatterning, such as heterochromatin formation, centromere function, and epigenetic-associated transposable element inactivation. |
| doi_str_mv | 10.3390/genes8100290 |
| format | Article |
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The evolution of chromosome size, structure and shape, number, and the change in DNA composition suggest the high plasticity of nuclear genomes at the chromosomal level. Repetitive DNA sequences, which represent a conspicuous fraction of every eukaryotic genome, particularly in plants, are found to be tightly linked with plant chromosome evolution. Different classes of repetitive sequences have distinct distribution patterns on the chromosomes. Mounting evidence shows that repetitive sequences may play multiple generative roles in shaping the chromosome karyotypes in plants. Furthermore, recent development in our understanding of the repetitive sequences and plant chromosome evolution has elucidated the involvement of a spectrum of epigenetic modification. In this review, we focused on the recent evidence relating to the distribution pattern of repetitive sequences in plant chromosomes and highlighted their potential relevance to chromosome evolution in plants. We also discussed the possible connections between evolution and epigenetic alterations in chromosome structure and repatterning, such as heterochromatin formation, centromere function, and epigenetic-associated transposable element inactivation.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes8100290</identifier><identifier>PMID: 29064432</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Chromosomes ; Epigenetics ; Evolution ; Genomes ; Heterochromatin ; Karyotypes ; Nucleotide sequence ; Review ; Transposons</subject><ispartof>Genes, 2017-10, Vol.8 (10), p.290</ispartof><rights>Copyright MDPI AG 2017</rights><rights>2017 by the authors. 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-1afb19d075e96ebd013643cd8e1dab7eb6cf01e86b45f93e9c5dd74f0a7453b53</citedby><cites>FETCH-LOGICAL-c412t-1afb19d075e96ebd013643cd8e1dab7eb6cf01e86b45f93e9c5dd74f0a7453b53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5664140/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5664140/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29064432$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Shu-Fen</creatorcontrib><creatorcontrib>Su, Ting</creatorcontrib><creatorcontrib>Cheng, Guang-Qian</creatorcontrib><creatorcontrib>Wang, Bing-Xiao</creatorcontrib><creatorcontrib>Li, Xu</creatorcontrib><creatorcontrib>Deng, Chuan-Liang</creatorcontrib><creatorcontrib>Gao, Wu-Jun</creatorcontrib><title>Chromosome Evolution in Connection with Repetitive Sequences and Epigenetics in Plants</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>Chromosome evolution is a fundamental aspect of evolutionary biology. The evolution of chromosome size, structure and shape, number, and the change in DNA composition suggest the high plasticity of nuclear genomes at the chromosomal level. Repetitive DNA sequences, which represent a conspicuous fraction of every eukaryotic genome, particularly in plants, are found to be tightly linked with plant chromosome evolution. Different classes of repetitive sequences have distinct distribution patterns on the chromosomes. Mounting evidence shows that repetitive sequences may play multiple generative roles in shaping the chromosome karyotypes in plants. Furthermore, recent development in our understanding of the repetitive sequences and plant chromosome evolution has elucidated the involvement of a spectrum of epigenetic modification. In this review, we focused on the recent evidence relating to the distribution pattern of repetitive sequences in plant chromosomes and highlighted their potential relevance to chromosome evolution in plants. We also discussed the possible connections between evolution and epigenetic alterations in chromosome structure and repatterning, such as heterochromatin formation, centromere function, and epigenetic-associated transposable element inactivation.</description><subject>Chromosomes</subject><subject>Epigenetics</subject><subject>Evolution</subject><subject>Genomes</subject><subject>Heterochromatin</subject><subject>Karyotypes</subject><subject>Nucleotide sequence</subject><subject>Review</subject><subject>Transposons</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNpdkd1P2zAUxa1pCBDrG89TJF72QNl1_JHkBWmqyoaEBILBq-U4N9RVYnexU8R_j7tC1e2--Fr--egcHUJOKVwwVsH3Z3QYSgqQV_CJHOdQsCnnufi8tx-RSQhLSMMhBxCH5CjRknOWH5On2WLwvQ--x2y-9t0YrXeZddnMO4fm7-3FxkV2jyuMNto1Zg_4Z0RnMGTaNdl8ZTcuojVh8--u0y6GL-Sg1V3Ayft5Qh6v5r9nv6Y3tz-vZz9upobTPE6pbmtaNVAIrCTWDVAmOTNNibTRdYG1NC1QLGXNRVsxrIxomoK3oAsuWC3YCbnc6q7GusfGoIuD7tRqsL0eXpXXVv374uxCPfu1ElJyyiEJfHsXGHxKFaLqbTDYpRTox6BoJQRIWbAioWf_oUs_Di7FS5QUsixBVIk631Jm8CEM2O7MUFCbztR-Zwn_uh9gB380xN4ADcSUMw</recordid><startdate>20171024</startdate><enddate>20171024</enddate><creator>Li, Shu-Fen</creator><creator>Su, Ting</creator><creator>Cheng, Guang-Qian</creator><creator>Wang, Bing-Xiao</creator><creator>Li, Xu</creator><creator>Deng, Chuan-Liang</creator><creator>Gao, Wu-Jun</creator><general>MDPI AG</general><general>MDPI</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20171024</creationdate><title>Chromosome Evolution in Connection with Repetitive Sequences and Epigenetics in Plants</title><author>Li, Shu-Fen ; Su, Ting ; Cheng, Guang-Qian ; Wang, Bing-Xiao ; Li, Xu ; Deng, Chuan-Liang ; Gao, Wu-Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c412t-1afb19d075e96ebd013643cd8e1dab7eb6cf01e86b45f93e9c5dd74f0a7453b53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Chromosomes</topic><topic>Epigenetics</topic><topic>Evolution</topic><topic>Genomes</topic><topic>Heterochromatin</topic><topic>Karyotypes</topic><topic>Nucleotide sequence</topic><topic>Review</topic><topic>Transposons</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Shu-Fen</creatorcontrib><creatorcontrib>Su, Ting</creatorcontrib><creatorcontrib>Cheng, Guang-Qian</creatorcontrib><creatorcontrib>Wang, Bing-Xiao</creatorcontrib><creatorcontrib>Li, Xu</creatorcontrib><creatorcontrib>Deng, Chuan-Liang</creatorcontrib><creatorcontrib>Gao, Wu-Jun</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>Biological Sciences</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Shu-Fen</au><au>Su, Ting</au><au>Cheng, Guang-Qian</au><au>Wang, Bing-Xiao</au><au>Li, Xu</au><au>Deng, Chuan-Liang</au><au>Gao, Wu-Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chromosome Evolution in Connection with Repetitive Sequences and Epigenetics in Plants</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2017-10-24</date><risdate>2017</risdate><volume>8</volume><issue>10</issue><spage>290</spage><pages>290-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>Chromosome evolution is a fundamental aspect of evolutionary biology. The evolution of chromosome size, structure and shape, number, and the change in DNA composition suggest the high plasticity of nuclear genomes at the chromosomal level. Repetitive DNA sequences, which represent a conspicuous fraction of every eukaryotic genome, particularly in plants, are found to be tightly linked with plant chromosome evolution. Different classes of repetitive sequences have distinct distribution patterns on the chromosomes. Mounting evidence shows that repetitive sequences may play multiple generative roles in shaping the chromosome karyotypes in plants. Furthermore, recent development in our understanding of the repetitive sequences and plant chromosome evolution has elucidated the involvement of a spectrum of epigenetic modification. In this review, we focused on the recent evidence relating to the distribution pattern of repetitive sequences in plant chromosomes and highlighted their potential relevance to chromosome evolution in plants. We also discussed the possible connections between evolution and epigenetic alterations in chromosome structure and repatterning, such as heterochromatin formation, centromere function, and epigenetic-associated transposable element inactivation.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>29064432</pmid><doi>10.3390/genes8100290</doi><oa>free_for_read</oa></addata></record> |
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| subjects | Chromosomes Epigenetics Evolution Genomes Heterochromatin Karyotypes Nucleotide sequence Review Transposons |
| title | Chromosome Evolution in Connection with Repetitive Sequences and Epigenetics in Plants |
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