Enhancement of Environmental Hazard Degradation in the Presence of Lignin: a Proteomics Study
Proteomics studies of fungal systems have progressed dramatically based on the availability of more fungal genome sequences in recent years. Different proteomics strategies have been applied toward characterization of fungal proteome and revealed important gene functions and proteome dynamics. Prese...
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| Veröffentlicht in: | Scientific reports 2017-09, Vol.7 (1), p.11356-11, Article 11356 |
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| creator | Sun, Su Xie, Shangxian Cheng, Yanbing Yu, Hongbo Zhao, Honglu Li, Muzi Li, Xiaotong Zhang, Xiaoyu Yuan, Joshua S. Dai, Susie Y. |
| description | Proteomics studies of fungal systems have progressed dramatically based on the availability of more fungal genome sequences in recent years. Different proteomics strategies have been applied toward characterization of fungal proteome and revealed important gene functions and proteome dynamics. Presented here is the application of shot-gun proteomic technology to study the bio-remediation of environmental hazards by white-rot fungus. Lignin, a naturally abundant component of the plant biomass, is discovered to promote the degradation of Azo dye by white-rot fungus
Irpex lacteus
CD2 in the lignin/dye/fungus system. Shotgun proteomics technique was used to understand degradation mechanism at the protein level for the lignin/dye/fungus system. Our proteomics study can identify about two thousand proteins (one third of the predicted white-rot fungal proteome) in a single experiment, as one of the most powerful proteomics platforms to study the fungal system to date. The study shows a significant enrichment of oxidoreduction functional category under the dye/lignin combined treatment. An
in vitro
validation is performed and supports our hypothesis that the synergy of Fenton reaction and manganese peroxidase might play an important role in DR5B dye degradation. The results could guide the development of effective bioremediation strategies and efficient lignocellulosic biomass conversion. |
| doi_str_mv | 10.1038/s41598-017-10132-4 |
| format | Article |
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Irpex lacteus
CD2 in the lignin/dye/fungus system. Shotgun proteomics technique was used to understand degradation mechanism at the protein level for the lignin/dye/fungus system. Our proteomics study can identify about two thousand proteins (one third of the predicted white-rot fungal proteome) in a single experiment, as one of the most powerful proteomics platforms to study the fungal system to date. The study shows a significant enrichment of oxidoreduction functional category under the dye/lignin combined treatment. An
in vitro
validation is performed and supports our hypothesis that the synergy of Fenton reaction and manganese peroxidase might play an important role in DR5B dye degradation. The results could guide the development of effective bioremediation strategies and efficient lignocellulosic biomass conversion.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-017-10132-4</identifier><identifier>PMID: 28900110</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/326/171/1878 ; 631/61/475 ; 82 ; 82/81 ; Azo Compounds - metabolism ; Azo dyes ; BASIC BIOLOGICAL SCIENCES ; Biodegradation ; Biodegradation, Environmental ; Biomass ; Bioremediation ; Biotransformation ; Combined treatment ; Computational Biology - methods ; Environmental hazards ; Fungi ; Fungi - genetics ; Fungi - metabolism ; Gene Expression ; Genomes ; Hazardous Substances - chemistry ; Humanities and Social Sciences ; Lignin ; Lignin - metabolism ; Manganese ; Manganese peroxidase ; multidisciplinary ; Oxidation-Reduction ; Peroxidase ; Plant biomass ; Proteomics ; Proteomics - methods ; Rot ; Science ; Science (multidisciplinary) ; water microbiology</subject><ispartof>Scientific reports, 2017-09, Vol.7 (1), p.11356-11, Article 11356</ispartof><rights>The Author(s) 2017</rights><rights>2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c501t-cd10ccb0b7a52f0250d6363c434dde9b39302efc51cdd3d7e229a22241d070cb3</citedby><cites>FETCH-LOGICAL-c501t-cd10ccb0b7a52f0250d6363c434dde9b39302efc51cdd3d7e229a22241d070cb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5595786/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5595786/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28900110$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/servlets/purl/1425151$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Sun, Su</creatorcontrib><creatorcontrib>Xie, Shangxian</creatorcontrib><creatorcontrib>Cheng, Yanbing</creatorcontrib><creatorcontrib>Yu, Hongbo</creatorcontrib><creatorcontrib>Zhao, Honglu</creatorcontrib><creatorcontrib>Li, Muzi</creatorcontrib><creatorcontrib>Li, Xiaotong</creatorcontrib><creatorcontrib>Zhang, Xiaoyu</creatorcontrib><creatorcontrib>Yuan, Joshua S.</creatorcontrib><creatorcontrib>Dai, Susie Y.</creatorcontrib><creatorcontrib>Huazhong Univ. of Science and Technology, Wuhan (China)</creatorcontrib><creatorcontrib>Texas A & M Univ., College Station, TX (United States)</creatorcontrib><title>Enhancement of Environmental Hazard Degradation in the Presence of Lignin: a Proteomics Study</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Proteomics studies of fungal systems have progressed dramatically based on the availability of more fungal genome sequences in recent years. Different proteomics strategies have been applied toward characterization of fungal proteome and revealed important gene functions and proteome dynamics. Presented here is the application of shot-gun proteomic technology to study the bio-remediation of environmental hazards by white-rot fungus. Lignin, a naturally abundant component of the plant biomass, is discovered to promote the degradation of Azo dye by white-rot fungus
Irpex lacteus
CD2 in the lignin/dye/fungus system. Shotgun proteomics technique was used to understand degradation mechanism at the protein level for the lignin/dye/fungus system. Our proteomics study can identify about two thousand proteins (one third of the predicted white-rot fungal proteome) in a single experiment, as one of the most powerful proteomics platforms to study the fungal system to date. The study shows a significant enrichment of oxidoreduction functional category under the dye/lignin combined treatment. An
in vitro
validation is performed and supports our hypothesis that the synergy of Fenton reaction and manganese peroxidase might play an important role in DR5B dye degradation. The results could guide the development of effective bioremediation strategies and efficient lignocellulosic biomass conversion.</description><subject>631/326/171/1878</subject><subject>631/61/475</subject><subject>82</subject><subject>82/81</subject><subject>Azo Compounds - metabolism</subject><subject>Azo dyes</subject><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>Biodegradation</subject><subject>Biodegradation, Environmental</subject><subject>Biomass</subject><subject>Bioremediation</subject><subject>Biotransformation</subject><subject>Combined treatment</subject><subject>Computational Biology - methods</subject><subject>Environmental hazards</subject><subject>Fungi</subject><subject>Fungi - genetics</subject><subject>Fungi - metabolism</subject><subject>Gene Expression</subject><subject>Genomes</subject><subject>Hazardous Substances - chemistry</subject><subject>Humanities and Social Sciences</subject><subject>Lignin</subject><subject>Lignin - metabolism</subject><subject>Manganese</subject><subject>Manganese peroxidase</subject><subject>multidisciplinary</subject><subject>Oxidation-Reduction</subject><subject>Peroxidase</subject><subject>Plant biomass</subject><subject>Proteomics</subject><subject>Proteomics - 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Academic</collection><collection>OSTI.GOV - Hybrid</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sun, Su</au><au>Xie, Shangxian</au><au>Cheng, Yanbing</au><au>Yu, Hongbo</au><au>Zhao, Honglu</au><au>Li, Muzi</au><au>Li, Xiaotong</au><au>Zhang, Xiaoyu</au><au>Yuan, Joshua S.</au><au>Dai, Susie Y.</au><aucorp>Huazhong Univ. of Science and Technology, Wuhan (China)</aucorp><aucorp>Texas A & M Univ., College Station, TX (United States)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Enhancement of Environmental Hazard Degradation in the Presence of Lignin: a Proteomics Study</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2017-09-12</date><risdate>2017</risdate><volume>7</volume><issue>1</issue><spage>11356</spage><epage>11</epage><pages>11356-11</pages><artnum>11356</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Proteomics studies of fungal systems have progressed dramatically based on the availability of more fungal genome sequences in recent years. Different proteomics strategies have been applied toward characterization of fungal proteome and revealed important gene functions and proteome dynamics. Presented here is the application of shot-gun proteomic technology to study the bio-remediation of environmental hazards by white-rot fungus. Lignin, a naturally abundant component of the plant biomass, is discovered to promote the degradation of Azo dye by white-rot fungus
Irpex lacteus
CD2 in the lignin/dye/fungus system. Shotgun proteomics technique was used to understand degradation mechanism at the protein level for the lignin/dye/fungus system. Our proteomics study can identify about two thousand proteins (one third of the predicted white-rot fungal proteome) in a single experiment, as one of the most powerful proteomics platforms to study the fungal system to date. The study shows a significant enrichment of oxidoreduction functional category under the dye/lignin combined treatment. An
in vitro
validation is performed and supports our hypothesis that the synergy of Fenton reaction and manganese peroxidase might play an important role in DR5B dye degradation. The results could guide the development of effective bioremediation strategies and efficient lignocellulosic biomass conversion.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>28900110</pmid><doi>10.1038/s41598-017-10132-4</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | 631/326/171/1878 631/61/475 82 82/81 Azo Compounds - metabolism Azo dyes BASIC BIOLOGICAL SCIENCES Biodegradation Biodegradation, Environmental Biomass Bioremediation Biotransformation Combined treatment Computational Biology - methods Environmental hazards Fungi Fungi - genetics Fungi - metabolism Gene Expression Genomes Hazardous Substances - chemistry Humanities and Social Sciences Lignin Lignin - metabolism Manganese Manganese peroxidase multidisciplinary Oxidation-Reduction Peroxidase Plant biomass Proteomics Proteomics - methods Rot Science Science (multidisciplinary) water microbiology |
| title | Enhancement of Environmental Hazard Degradation in the Presence of Lignin: a Proteomics Study |
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