Crystal structures and supra-molecular features of 9,9-dimethyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one, 3,7-di-aza-spiro-[bi-cyclo-[3.3.1]nonane-9,1'-cyclo-penta-ne]-2,4,6,8-tetra-one and 9-methyl-9-phenyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one di-methyl-formamide monosolvate

Compounds (I), C H N O , (II), C H N O , and (III), C H N O ·C H NO represent 9,9-disubstituted-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one deriv-atives with very similar mol-ecular geometries for the bicyclic framework: the dihedral angle between the planes of the imide groups is 74.87 (6),...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Acta crystallographica. Section E, Crystallographic communications Crystallographic communications, 2017-07, Vol.73 (Pt 7), p.1097-1101
Hauptverfasser: Vatsadze, Sergey Z, Manaenkova, Marina A, Vasilev, Evgeny V, Venskovsky, Nikolai U, Khrustalev, Victor N
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 1101
container_issue Pt 7
container_start_page 1097
container_title Acta crystallographica. Section E, Crystallographic communications
container_volume 73
creator Vatsadze, Sergey Z
Manaenkova, Marina A
Vasilev, Evgeny V
Venskovsky, Nikolai U
Khrustalev, Victor N
description Compounds (I), C H N O , (II), C H N O , and (III), C H N O ·C H NO represent 9,9-disubstituted-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one deriv-atives with very similar mol-ecular geometries for the bicyclic framework: the dihedral angle between the planes of the imide groups is 74.87 (6), 73.86 (3) and 74.83 (6)° in (I)-(III), respectively. The dimethyl derivative (I) is positioned on a crystallographic twofold axis and its overall geometry deviates only slightly from idealized symmetry. The spiro-cyclo-pentane derivative (II) and the phen-yl/methyl analog (III) retain only inter-nal symmetry, which in the case of (II) coincides with crystallographic mirror symmetry. The cyclo-pentane moiety in (II) adopts an envelope conformation, with the spiro C atom deviating from the mean plane of the rest of the ring by 0.548 (2) Å. In compound (III), an N-H⋯O hydrogen bond is formed with the di-methyl-formamide solvent mol-ecule. In the crystal, both (I) and (II) form similar zigzag hydrogen-bonded ribbons through double inter-molecular N-H⋯O hydrogen bonds. However, whereas in (I) the ribbons are formed by two -arranged O=C-N-H amide fragments, the amide fragments are -positioned in (II). The formation of ribbons in (III) is apparently disrupted by participation of one of its N-H groups in hydrogen bonding with the solvent mol-ecule. As a result, the mol-ecules of (III) form zigzag chains rather than the ribbons through inter-molecular N-H⋯O hydrogen bonds. The crystal of (I) was a pseudo-merohedral twin.
doi_str_mv 10.1107/S2056989017009458
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5499299</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1926684071</sourcerecordid><originalsourceid>FETCH-LOGICAL-p1119-de90a2d212eea94dbe97e4329c34b17348acb7c07bac4235d422c37eb788cf7d3</originalsourceid><addsrcrecordid>eNqdkk1v1DAQhgMqolXpD-CCcoNDvPVX4viCVK2gRarUQ-GEqmjiTNggxw62U2n59aQ0oEVw4uTxvDPPvGM5y14yumGMqvNbTstK15oyRamWZf00O3lIkYfc0UF8nJ3F-JVSymQpqpI_z455rVRZa3bypNiGfUxg85jCbNIcMObgujzOUwAyeotmthDyHuFR9H2uC026YcS021siCrVcCHwH0g5mb6wnn8VGbNid8w4cEl7IoipqkjAtRO-wyA964jSEpaMdyL96dcFer8KELgFxePc38KdhTVZDmkw7dP_lLF_KV0rvwwjj0GE-euejt_eQ8EX2rAcb8Ww9T7NP79993F6R65vLD9uLazIxxpa3QU2Bd5xxRNCya1ErlIJrI2TLlJA1mFYZqlowkouyk5wbobBVdW161YnT7O0jd5rbETuzrB7ANlMYRgj7xsPQ_Km4Ydd88fdNKbXmWi-ANysg-G8zxtSMQzRo7bK2n2PDNK-qWlLFltJXh7N-D_n1RcQPria-QA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1926684071</pqid></control><display><type>article</type><title>Crystal structures and supra-molecular features of 9,9-dimethyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one, 3,7-di-aza-spiro-[bi-cyclo-[3.3.1]nonane-9,1'-cyclo-penta-ne]-2,4,6,8-tetra-one and 9-methyl-9-phenyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one di-methyl-formamide monosolvate</title><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central Open Access</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Vatsadze, Sergey Z ; Manaenkova, Marina A ; Vasilev, Evgeny V ; Venskovsky, Nikolai U ; Khrustalev, Victor N</creator><creatorcontrib>Vatsadze, Sergey Z ; Manaenkova, Marina A ; Vasilev, Evgeny V ; Venskovsky, Nikolai U ; Khrustalev, Victor N</creatorcontrib><description>Compounds (I), C H N O , (II), C H N O , and (III), C H N O ·C H NO represent 9,9-disubstituted-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one deriv-atives with very similar mol-ecular geometries for the bicyclic framework: the dihedral angle between the planes of the imide groups is 74.87 (6), 73.86 (3) and 74.83 (6)° in (I)-(III), respectively. The dimethyl derivative (I) is positioned on a crystallographic twofold axis and its overall geometry deviates only slightly from idealized symmetry. The spiro-cyclo-pentane derivative (II) and the phen-yl/methyl analog (III) retain only inter-nal symmetry, which in the case of (II) coincides with crystallographic mirror symmetry. The cyclo-pentane moiety in (II) adopts an envelope conformation, with the spiro C atom deviating from the mean plane of the rest of the ring by 0.548 (2) Å. In compound (III), an N-H⋯O hydrogen bond is formed with the di-methyl-formamide solvent mol-ecule. In the crystal, both (I) and (II) form similar zigzag hydrogen-bonded ribbons through double inter-molecular N-H⋯O hydrogen bonds. However, whereas in (I) the ribbons are formed by two -arranged O=C-N-H amide fragments, the amide fragments are -positioned in (II). The formation of ribbons in (III) is apparently disrupted by participation of one of its N-H groups in hydrogen bonding with the solvent mol-ecule. As a result, the mol-ecules of (III) form zigzag chains rather than the ribbons through inter-molecular N-H⋯O hydrogen bonds. The crystal of (I) was a pseudo-merohedral twin.</description><identifier>ISSN: 2056-9890</identifier><identifier>EISSN: 2056-9890</identifier><identifier>DOI: 10.1107/S2056989017009458</identifier><identifier>PMID: 28775891</identifier><language>eng</language><publisher>England: International Union of Crystallography</publisher><subject>Research Communications</subject><ispartof>Acta crystallographica. Section E, Crystallographic communications, 2017-07, Vol.73 (Pt 7), p.1097-1101</ispartof><rights>Vatsadze et al. 2017 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0001-7884-8579 ; 0000-0001-8806-2975</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499299/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499299/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28775891$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Vatsadze, Sergey Z</creatorcontrib><creatorcontrib>Manaenkova, Marina A</creatorcontrib><creatorcontrib>Vasilev, Evgeny V</creatorcontrib><creatorcontrib>Venskovsky, Nikolai U</creatorcontrib><creatorcontrib>Khrustalev, Victor N</creatorcontrib><title>Crystal structures and supra-molecular features of 9,9-dimethyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one, 3,7-di-aza-spiro-[bi-cyclo-[3.3.1]nonane-9,1'-cyclo-penta-ne]-2,4,6,8-tetra-one and 9-methyl-9-phenyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one di-methyl-formamide monosolvate</title><title>Acta crystallographica. Section E, Crystallographic communications</title><addtitle>Acta Crystallogr E Crystallogr Commun</addtitle><description>Compounds (I), C H N O , (II), C H N O , and (III), C H N O ·C H NO represent 9,9-disubstituted-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one deriv-atives with very similar mol-ecular geometries for the bicyclic framework: the dihedral angle between the planes of the imide groups is 74.87 (6), 73.86 (3) and 74.83 (6)° in (I)-(III), respectively. The dimethyl derivative (I) is positioned on a crystallographic twofold axis and its overall geometry deviates only slightly from idealized symmetry. The spiro-cyclo-pentane derivative (II) and the phen-yl/methyl analog (III) retain only inter-nal symmetry, which in the case of (II) coincides with crystallographic mirror symmetry. The cyclo-pentane moiety in (II) adopts an envelope conformation, with the spiro C atom deviating from the mean plane of the rest of the ring by 0.548 (2) Å. In compound (III), an N-H⋯O hydrogen bond is formed with the di-methyl-formamide solvent mol-ecule. In the crystal, both (I) and (II) form similar zigzag hydrogen-bonded ribbons through double inter-molecular N-H⋯O hydrogen bonds. However, whereas in (I) the ribbons are formed by two -arranged O=C-N-H amide fragments, the amide fragments are -positioned in (II). The formation of ribbons in (III) is apparently disrupted by participation of one of its N-H groups in hydrogen bonding with the solvent mol-ecule. As a result, the mol-ecules of (III) form zigzag chains rather than the ribbons through inter-molecular N-H⋯O hydrogen bonds. The crystal of (I) was a pseudo-merohedral twin.</description><subject>Research Communications</subject><issn>2056-9890</issn><issn>2056-9890</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNqdkk1v1DAQhgMqolXpD-CCcoNDvPVX4viCVK2gRarUQ-GEqmjiTNggxw62U2n59aQ0oEVw4uTxvDPPvGM5y14yumGMqvNbTstK15oyRamWZf00O3lIkYfc0UF8nJ3F-JVSymQpqpI_z455rVRZa3bypNiGfUxg85jCbNIcMObgujzOUwAyeotmthDyHuFR9H2uC026YcS021siCrVcCHwH0g5mb6wnn8VGbNid8w4cEl7IoipqkjAtRO-wyA964jSEpaMdyL96dcFer8KELgFxePc38KdhTVZDmkw7dP_lLF_KV0rvwwjj0GE-euejt_eQ8EX2rAcb8Ww9T7NP79993F6R65vLD9uLazIxxpa3QU2Bd5xxRNCya1ErlIJrI2TLlJA1mFYZqlowkouyk5wbobBVdW161YnT7O0jd5rbETuzrB7ANlMYRgj7xsPQ_Km4Ydd88fdNKbXmWi-ANysg-G8zxtSMQzRo7bK2n2PDNK-qWlLFltJXh7N-D_n1RcQPria-QA</recordid><startdate>20170701</startdate><enddate>20170701</enddate><creator>Vatsadze, Sergey Z</creator><creator>Manaenkova, Marina A</creator><creator>Vasilev, Evgeny V</creator><creator>Venskovsky, Nikolai U</creator><creator>Khrustalev, Victor N</creator><general>International Union of Crystallography</general><scope>NPM</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-7884-8579</orcidid><orcidid>https://orcid.org/0000-0001-8806-2975</orcidid></search><sort><creationdate>20170701</creationdate><title>Crystal structures and supra-molecular features of 9,9-dimethyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one, 3,7-di-aza-spiro-[bi-cyclo-[3.3.1]nonane-9,1'-cyclo-penta-ne]-2,4,6,8-tetra-one and 9-methyl-9-phenyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one di-methyl-formamide monosolvate</title><author>Vatsadze, Sergey Z ; Manaenkova, Marina A ; Vasilev, Evgeny V ; Venskovsky, Nikolai U ; Khrustalev, Victor N</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p1119-de90a2d212eea94dbe97e4329c34b17348acb7c07bac4235d422c37eb788cf7d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Research Communications</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Vatsadze, Sergey Z</creatorcontrib><creatorcontrib>Manaenkova, Marina A</creatorcontrib><creatorcontrib>Vasilev, Evgeny V</creatorcontrib><creatorcontrib>Venskovsky, Nikolai U</creatorcontrib><creatorcontrib>Khrustalev, Victor N</creatorcontrib><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Acta crystallographica. Section E, Crystallographic communications</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Vatsadze, Sergey Z</au><au>Manaenkova, Marina A</au><au>Vasilev, Evgeny V</au><au>Venskovsky, Nikolai U</au><au>Khrustalev, Victor N</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Crystal structures and supra-molecular features of 9,9-dimethyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one, 3,7-di-aza-spiro-[bi-cyclo-[3.3.1]nonane-9,1'-cyclo-penta-ne]-2,4,6,8-tetra-one and 9-methyl-9-phenyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one di-methyl-formamide monosolvate</atitle><jtitle>Acta crystallographica. Section E, Crystallographic communications</jtitle><addtitle>Acta Crystallogr E Crystallogr Commun</addtitle><date>2017-07-01</date><risdate>2017</risdate><volume>73</volume><issue>Pt 7</issue><spage>1097</spage><epage>1101</epage><pages>1097-1101</pages><issn>2056-9890</issn><eissn>2056-9890</eissn><abstract>Compounds (I), C H N O , (II), C H N O , and (III), C H N O ·C H NO represent 9,9-disubstituted-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one deriv-atives with very similar mol-ecular geometries for the bicyclic framework: the dihedral angle between the planes of the imide groups is 74.87 (6), 73.86 (3) and 74.83 (6)° in (I)-(III), respectively. The dimethyl derivative (I) is positioned on a crystallographic twofold axis and its overall geometry deviates only slightly from idealized symmetry. The spiro-cyclo-pentane derivative (II) and the phen-yl/methyl analog (III) retain only inter-nal symmetry, which in the case of (II) coincides with crystallographic mirror symmetry. The cyclo-pentane moiety in (II) adopts an envelope conformation, with the spiro C atom deviating from the mean plane of the rest of the ring by 0.548 (2) Å. In compound (III), an N-H⋯O hydrogen bond is formed with the di-methyl-formamide solvent mol-ecule. In the crystal, both (I) and (II) form similar zigzag hydrogen-bonded ribbons through double inter-molecular N-H⋯O hydrogen bonds. However, whereas in (I) the ribbons are formed by two -arranged O=C-N-H amide fragments, the amide fragments are -positioned in (II). The formation of ribbons in (III) is apparently disrupted by participation of one of its N-H groups in hydrogen bonding with the solvent mol-ecule. As a result, the mol-ecules of (III) form zigzag chains rather than the ribbons through inter-molecular N-H⋯O hydrogen bonds. The crystal of (I) was a pseudo-merohedral twin.</abstract><cop>England</cop><pub>International Union of Crystallography</pub><pmid>28775891</pmid><doi>10.1107/S2056989017009458</doi><tpages>5</tpages><orcidid>https://orcid.org/0000-0001-7884-8579</orcidid><orcidid>https://orcid.org/0000-0001-8806-2975</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2056-9890
ispartof Acta crystallographica. Section E, Crystallographic communications, 2017-07, Vol.73 (Pt 7), p.1097-1101
issn 2056-9890
2056-9890
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5499299
source DOAJ Directory of Open Access Journals; PubMed Central Open Access; PubMed Central; Free Full-Text Journals in Chemistry
subjects Research Communications
title Crystal structures and supra-molecular features of 9,9-dimethyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one, 3,7-di-aza-spiro-[bi-cyclo-[3.3.1]nonane-9,1'-cyclo-penta-ne]-2,4,6,8-tetra-one and 9-methyl-9-phenyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one di-methyl-formamide monosolvate
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-01T17%3A04%3A40IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Crystal%20structures%20and%20supra-molecular%20features%20of%209,9-dimethyl-3,7-di-aza-bicyclo-%5B3.3.1%5Dnonane-2,4,6,8-tetra-one,%203,7-di-aza-spiro-%5Bbi-cyclo-%5B3.3.1%5Dnonane-9,1'-cyclo-penta-ne%5D-2,4,6,8-tetra-one%20and%209-methyl-9-phenyl-3,7-di-aza-bicyclo-%5B3.3.1%5Dnonane-2,4,6,8-tetra-one%20di-methyl-formamide%20monosolvate&rft.jtitle=Acta%20crystallographica.%20Section%20E,%20Crystallographic%20communications&rft.au=Vatsadze,%20Sergey%20Z&rft.date=2017-07-01&rft.volume=73&rft.issue=Pt%207&rft.spage=1097&rft.epage=1101&rft.pages=1097-1101&rft.issn=2056-9890&rft.eissn=2056-9890&rft_id=info:doi/10.1107/S2056989017009458&rft_dat=%3Cproquest_pubme%3E1926684071%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1926684071&rft_id=info:pmid/28775891&rfr_iscdi=true