The ProDom database of protein domain families: more emphasis on 3D

ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/...

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Veröffentlicht in:	Nucleic acids research 2005-01, Vol.33 (suppl-1), p.D212-D215
Hauptverfasser:	Bru, Catherine, Courcelle, Emmanuel, Carrère, Sébastien, Beausse, Yoann, Dalmar, Sandrine, Kahn, Daniel
Format:	Artikel
Sprache:	eng
Schlagworte:	Computer Graphics Databases, Protein Genomics Internet Life Sciences Models, Molecular Other Protein Structure, Tertiary Proteins - chemistry Proteins - classification Sequence Alignment Sequence Analysis, Protein User-Computer Interface
Online-Zugang:	Volltext
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Beschreibung
Zusammenfassung:	ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/prodom.html); visualization of ProDom domains on 3D structures; coupling of ProDom analysis with the Geno3D homology modelling server; Bayesian inference of evolutionary scenarios for ProDom families. In addition, we have developed ProDom-SG, a ProDom-based server dedicated to the selection of candidate proteins for structural genomics.
ISSN:	0305-1048 1362-4962 1362-4962
DOI:	10.1093/nar/gki034