Study of lung cancer regulatory network that involves erbB4 and tumor marker gene
Our purpose is to screen out serum tumor markers closely correlated to the nature of solitary pulmonary nodule (SPN) and to draw a regulatory network containing genes correlated to lung cancer. Two hundred and sixty cases of SPN patients confirmed through pathological diagnosis were collected as sub...
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Veröffentlicht in: | Saudi journal of biological sciences 2017-03, Vol.24 (3), p.649-657 |
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creator | Ma, Xuhui Li, Lu Tian, Tongde Liu, Huaimin Li, Qiujian Gao, Qilong |
description | Our purpose is to screen out serum tumor markers closely correlated to the nature of solitary pulmonary nodule (SPN) and to draw a regulatory network containing genes correlated to lung cancer. Two hundred and sixty cases of SPN patients confirmed through pathological diagnosis were collected as subjects, factors closely correlated to the nature of SPN were screened out from eight tumor markers through Fisher discriminant method, and functional annotation and pathway analysis were conducted on erbB4 as well as its tumor marker genes by GO and KEGG databases. Four key tumor markers: CYFRA21-1, CA125, SCC-Ag and CA153 were successfully screened out and the first three proteins’ corresponding gene were KRT19, MUC16 and SERPINB3 while that of CA153 was not found. GO analysis on erbB4, KRT19, MUC16 and SERPINB3 showed that they covered three domains, cell components, molecular function and biological process; meanwhile, combined with KEGG database and based on signal pathway of erbB4, a regulatory network of lung cancer cells escaping from apoptosis was successfully made. This study indicates that serum tumor marker genes play an important role in the occurrence and development of lung cancer, besides, this study primarily discussed the molecular mechanism of these tumor markers in predicting tumor, which provides a basis for in-depth information about lung cancer. |
doi_str_mv | 10.1016/j.sjbs.2017.01.038 |
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Two hundred and sixty cases of SPN patients confirmed through pathological diagnosis were collected as subjects, factors closely correlated to the nature of SPN were screened out from eight tumor markers through Fisher discriminant method, and functional annotation and pathway analysis were conducted on erbB4 as well as its tumor marker genes by GO and KEGG databases. Four key tumor markers: CYFRA21-1, CA125, SCC-Ag and CA153 were successfully screened out and the first three proteins’ corresponding gene were KRT19, MUC16 and SERPINB3 while that of CA153 was not found. GO analysis on erbB4, KRT19, MUC16 and SERPINB3 showed that they covered three domains, cell components, molecular function and biological process; meanwhile, combined with KEGG database and based on signal pathway of erbB4, a regulatory network of lung cancer cells escaping from apoptosis was successfully made. This study indicates that serum tumor marker genes play an important role in the occurrence and development of lung cancer, besides, this study primarily discussed the molecular mechanism of these tumor markers in predicting tumor, which provides a basis for in-depth information about lung cancer.</description><identifier>ISSN: 1319-562X</identifier><identifier>EISSN: 2213-7106</identifier><identifier>DOI: 10.1016/j.sjbs.2017.01.038</identifier><identifier>PMID: 28386192</identifier><language>eng</language><publisher>Riyadh, Saudi Arabia: Elsevier B.V</publisher><subject>ErbB4 ; Lung cancer ; Original ; Regulatory network ; Tumor marker ; الأورام ; التشخيص ; الرئتان ; السرطان ; الواسمات الحيوية ; علم الأمراض</subject><ispartof>Saudi journal of biological sciences, 2017-03, Vol.24 (3), p.649-657</ispartof><rights>2017 The Authors</rights><rights>2017 The Authors 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c477t-c4bf6f11b6ba87c14a926dd64717188faf41af2db2c67520f060fa52d0f1f8553</citedby><cites>FETCH-LOGICAL-c477t-c4bf6f11b6ba87c14a926dd64717188faf41af2db2c67520f060fa52d0f1f8553</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5372390/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.sjbs.2017.01.038$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,3548,27923,27924,45994,53790,53792</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28386192$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ma, Xuhui</creatorcontrib><creatorcontrib>Li, Lu</creatorcontrib><creatorcontrib>Tian, Tongde</creatorcontrib><creatorcontrib>Liu, Huaimin</creatorcontrib><creatorcontrib>Li, Qiujian</creatorcontrib><creatorcontrib>Gao, Qilong</creatorcontrib><title>Study of lung cancer regulatory network that involves erbB4 and tumor marker gene</title><title>Saudi journal of biological sciences</title><addtitle>Saudi J Biol Sci</addtitle><description>Our purpose is to screen out serum tumor markers closely correlated to the nature of solitary pulmonary nodule (SPN) and to draw a regulatory network containing genes correlated to lung cancer. Two hundred and sixty cases of SPN patients confirmed through pathological diagnosis were collected as subjects, factors closely correlated to the nature of SPN were screened out from eight tumor markers through Fisher discriminant method, and functional annotation and pathway analysis were conducted on erbB4 as well as its tumor marker genes by GO and KEGG databases. Four key tumor markers: CYFRA21-1, CA125, SCC-Ag and CA153 were successfully screened out and the first three proteins’ corresponding gene were KRT19, MUC16 and SERPINB3 while that of CA153 was not found. GO analysis on erbB4, KRT19, MUC16 and SERPINB3 showed that they covered three domains, cell components, molecular function and biological process; meanwhile, combined with KEGG database and based on signal pathway of erbB4, a regulatory network of lung cancer cells escaping from apoptosis was successfully made. This study indicates that serum tumor marker genes play an important role in the occurrence and development of lung cancer, besides, this study primarily discussed the molecular mechanism of these tumor markers in predicting tumor, which provides a basis for in-depth information about lung cancer.</description><subject>ErbB4</subject><subject>Lung cancer</subject><subject>Original</subject><subject>Regulatory network</subject><subject>Tumor marker</subject><subject>الأورام</subject><subject>التشخيص</subject><subject>الرئتان</subject><subject>السرطان</subject><subject>الواسمات الحيوية</subject><subject>علم الأمراض</subject><issn>1319-562X</issn><issn>2213-7106</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNp9UV2LFDEQDOLhrad_QFDy6MvOpZOZZAZE0MMvOBBRwbeQyXT2Zm82OZPMyv77y7Lroi_30g3dVdVFFyEvgFXAQF6uq7TuU8UZqIpBxUT7iCw4B7FUwORjsgAB3bKR_Nc5eZrSmjHZihaekHNeuoSOL8i373kedjQ4Os1-Ra3xFiONuJonk0PcUY_5T4i3NN-YTEe_DdMWE8XYv6-p8QPN8yZEujHxtvBW6PEZOXNmSvj82C_Iz48fflx9Xl5__fTl6t310tZK5VJ7Jx1AL3vTKgu16bgcBlkrUNC2zrgajONDz61UDWeOSeZMwwfmwLVNIy7I24Pu3dxvcLDoczSTvotjMbPTwYz6_40fb_QqbHUjFBcdKwKvjwIx_J4xZb0Zk8VpMh7DnHRx0XSNqFtRoPwAtTGkFNGdzgDT-yz0Wu-z0PssNANdsiikV_8aPFH-Pr8AXh4AWObozAmhJCi1F3hz3Jc3bkeMOtkRS0DDGNFmPYTxofv3uOmmlg</recordid><startdate>20170301</startdate><enddate>20170301</enddate><creator>Ma, Xuhui</creator><creator>Li, Lu</creator><creator>Tian, Tongde</creator><creator>Liu, Huaimin</creator><creator>Li, Qiujian</creator><creator>Gao, Qilong</creator><general>Elsevier B.V</general><general>Saudi Biological Society</general><general>Elsevier</general><scope>6I.</scope><scope>AAFTH</scope><scope>ADJCN</scope><scope>AHFXO</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20170301</creationdate><title>Study of lung cancer regulatory network that involves erbB4 and tumor marker gene</title><author>Ma, Xuhui ; Li, Lu ; Tian, Tongde ; Liu, Huaimin ; Li, Qiujian ; Gao, Qilong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c477t-c4bf6f11b6ba87c14a926dd64717188faf41af2db2c67520f060fa52d0f1f8553</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>ErbB4</topic><topic>Lung cancer</topic><topic>Original</topic><topic>Regulatory network</topic><topic>Tumor marker</topic><topic>الأورام</topic><topic>التشخيص</topic><topic>الرئتان</topic><topic>السرطان</topic><topic>الواسمات الحيوية</topic><topic>علم الأمراض</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ma, Xuhui</creatorcontrib><creatorcontrib>Li, Lu</creatorcontrib><creatorcontrib>Tian, Tongde</creatorcontrib><creatorcontrib>Liu, Huaimin</creatorcontrib><creatorcontrib>Li, Qiujian</creatorcontrib><creatorcontrib>Gao, Qilong</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>الدوريات العلمية والإحصائية - e-Marefa Academic and Statistical Periodicals</collection><collection>معرفة - المحتوى العربي الأكاديمي المتكامل - e-Marefa Academic Complete</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Saudi journal of biological sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ma, Xuhui</au><au>Li, Lu</au><au>Tian, Tongde</au><au>Liu, Huaimin</au><au>Li, Qiujian</au><au>Gao, Qilong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Study of lung cancer regulatory network that involves erbB4 and tumor marker gene</atitle><jtitle>Saudi journal of biological sciences</jtitle><addtitle>Saudi J Biol Sci</addtitle><date>2017-03-01</date><risdate>2017</risdate><volume>24</volume><issue>3</issue><spage>649</spage><epage>657</epage><pages>649-657</pages><issn>1319-562X</issn><eissn>2213-7106</eissn><abstract>Our purpose is to screen out serum tumor markers closely correlated to the nature of solitary pulmonary nodule (SPN) and to draw a regulatory network containing genes correlated to lung cancer. Two hundred and sixty cases of SPN patients confirmed through pathological diagnosis were collected as subjects, factors closely correlated to the nature of SPN were screened out from eight tumor markers through Fisher discriminant method, and functional annotation and pathway analysis were conducted on erbB4 as well as its tumor marker genes by GO and KEGG databases. Four key tumor markers: CYFRA21-1, CA125, SCC-Ag and CA153 were successfully screened out and the first three proteins’ corresponding gene were KRT19, MUC16 and SERPINB3 while that of CA153 was not found. GO analysis on erbB4, KRT19, MUC16 and SERPINB3 showed that they covered three domains, cell components, molecular function and biological process; meanwhile, combined with KEGG database and based on signal pathway of erbB4, a regulatory network of lung cancer cells escaping from apoptosis was successfully made. This study indicates that serum tumor marker genes play an important role in the occurrence and development of lung cancer, besides, this study primarily discussed the molecular mechanism of these tumor markers in predicting tumor, which provides a basis for in-depth information about lung cancer.</abstract><cop>Riyadh, Saudi Arabia</cop><pub>Elsevier B.V</pub><pmid>28386192</pmid><doi>10.1016/j.sjbs.2017.01.038</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | ErbB4 Lung cancer Original Regulatory network Tumor marker الأورام التشخيص الرئتان السرطان الواسمات الحيوية علم الأمراض |
title | Study of lung cancer regulatory network that involves erbB4 and tumor marker gene |
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