Genome-Wide Identification, Expression Patterns, and Functional Analysis of UDP Glycosyltransferase Family in Peach ( Prunus persica L. Batsch)
Peach ( L. Batsch) is a commercial grown fruit trees, important because of its essential nutrients and flavor promoting secondary metabolites. The glycosylation processes mediated by UDP-glycosyltransferases (UGTs) play an important role in regulating secondary metabolites availability. Identificati...
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Veröffentlicht in: | Frontiers in plant science 2017-03, Vol.8, p.389-389 |
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creator | Wu, Boping Gao, Liuxiao Gao, Jie Xu, Yaying Liu, Hongru Cao, Xiangmei Zhang, Bo Chen, Kunsong |
description | Peach (
L. Batsch) is a commercial grown fruit trees, important because of its essential nutrients and flavor promoting secondary metabolites. The glycosylation processes mediated by UDP-glycosyltransferases (UGTs) play an important role in regulating secondary metabolites availability. Identification and characterization of peach
is therefore a research priority. A total of 168 peach
genes that distributed unevenly across chromosomes were identified based on their conserved PSPG motifs. Phylogenetic analysis of these genes with plant UGTs clustered them into 16 groups (A-P). Comparison of the patterns of intron-extron and their positions within genes revealed one highly conserved intron insertion event in peach
. Tissue specificity, temporal expression patterns in peach fruit during development and ripening, and in response to abiotic stress UV-B irradiation was investigated using RNA-seq strategy. The relationship between
transcript levels and concentrations of glycosylated volatiles was examined to select candidates for functional analysis. Heterologous expressing these candidate genes in
identified UGTs that were involved in the
volatile glycosylation. Our results provide an important source for the identification of functional
genes to potential manipulate secondary biosynthesis in peach. |
doi_str_mv | 10.3389/fpls.2017.00389 |
format | Article |
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L. Batsch) is a commercial grown fruit trees, important because of its essential nutrients and flavor promoting secondary metabolites. The glycosylation processes mediated by UDP-glycosyltransferases (UGTs) play an important role in regulating secondary metabolites availability. Identification and characterization of peach
is therefore a research priority. A total of 168 peach
genes that distributed unevenly across chromosomes were identified based on their conserved PSPG motifs. Phylogenetic analysis of these genes with plant UGTs clustered them into 16 groups (A-P). Comparison of the patterns of intron-extron and their positions within genes revealed one highly conserved intron insertion event in peach
. Tissue specificity, temporal expression patterns in peach fruit during development and ripening, and in response to abiotic stress UV-B irradiation was investigated using RNA-seq strategy. The relationship between
transcript levels and concentrations of glycosylated volatiles was examined to select candidates for functional analysis. Heterologous expressing these candidate genes in
identified UGTs that were involved in the
volatile glycosylation. Our results provide an important source for the identification of functional
genes to potential manipulate secondary biosynthesis in peach.</description><identifier>ISSN: 1664-462X</identifier><identifier>EISSN: 1664-462X</identifier><identifier>DOI: 10.3389/fpls.2017.00389</identifier><identifier>PMID: 28382047</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>Plant Science</subject><ispartof>Frontiers in plant science, 2017-03, Vol.8, p.389-389</ispartof><rights>Copyright © 2017 Wu, Gao, Gao, Xu, Liu, Cao, Zhang and Chen. 2017 Wu, Gao, Gao, Xu, Liu, Cao, Zhang and Chen</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c459t-a06c793a5a071d2b0ad09fb9a7ee5417b64c9fc134df5fae69f858a460f82aaa3</citedby><cites>FETCH-LOGICAL-c459t-a06c793a5a071d2b0ad09fb9a7ee5417b64c9fc134df5fae69f858a460f82aaa3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5360731/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5360731/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,861,882,27905,27906,53772,53774</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28382047$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wu, Boping</creatorcontrib><creatorcontrib>Gao, Liuxiao</creatorcontrib><creatorcontrib>Gao, Jie</creatorcontrib><creatorcontrib>Xu, Yaying</creatorcontrib><creatorcontrib>Liu, Hongru</creatorcontrib><creatorcontrib>Cao, Xiangmei</creatorcontrib><creatorcontrib>Zhang, Bo</creatorcontrib><creatorcontrib>Chen, Kunsong</creatorcontrib><title>Genome-Wide Identification, Expression Patterns, and Functional Analysis of UDP Glycosyltransferase Family in Peach ( Prunus persica L. Batsch)</title><title>Frontiers in plant science</title><addtitle>Front Plant Sci</addtitle><description>Peach (
L. Batsch) is a commercial grown fruit trees, important because of its essential nutrients and flavor promoting secondary metabolites. The glycosylation processes mediated by UDP-glycosyltransferases (UGTs) play an important role in regulating secondary metabolites availability. Identification and characterization of peach
is therefore a research priority. A total of 168 peach
genes that distributed unevenly across chromosomes were identified based on their conserved PSPG motifs. Phylogenetic analysis of these genes with plant UGTs clustered them into 16 groups (A-P). Comparison of the patterns of intron-extron and their positions within genes revealed one highly conserved intron insertion event in peach
. Tissue specificity, temporal expression patterns in peach fruit during development and ripening, and in response to abiotic stress UV-B irradiation was investigated using RNA-seq strategy. The relationship between
transcript levels and concentrations of glycosylated volatiles was examined to select candidates for functional analysis. Heterologous expressing these candidate genes in
identified UGTs that were involved in the
volatile glycosylation. Our results provide an important source for the identification of functional
genes to potential manipulate secondary biosynthesis in peach.</description><subject>Plant Science</subject><issn>1664-462X</issn><issn>1664-462X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNpVkU1r3DAQhk1paUKSc29FxxTijeRP6VJI0-w2sJA9JLQ3MSuPuiq27GrsUv-K_OVomw_SOcwHevWOxJMkHwRf5LlU53ZoaZFxUS84j_Ob5FBUVZEWVfbj7av-IDkh-sVjlJwrVb9PDjKZy4wX9WFyv0Lfd5h-dw2y6wb96KwzMLren7Grv0NAotizDYwjBk9nDHzDlpM3ewm07CKmmRyx3rK7rxu2amfT09yOATxZDEDIltC5dmYu2iCYHTtlmzD5idiAgeI2tl6wLzCS2X06Tt5ZaAlPnupRcre8ur38lq5vVteXF-vUFKUaU-CVqVUOJfBaNNmWQ8OV3SqoEctC1NuqMMoakReNLS1gpawsJRQVtzIDgPwo-fzoO0zbDhsTPx6g1UNwHYRZ9-D0_yfe7fTP_o8u84rXuYgGp08Gof89IY26c2SwbcFjP5EWUhZSCZlVUXr-KDWhJwpoX9YIrvck9Z6k3pPU_0jGGx9fv-5F_8wtfwDn3J2Q</recordid><startdate>20170322</startdate><enddate>20170322</enddate><creator>Wu, Boping</creator><creator>Gao, Liuxiao</creator><creator>Gao, Jie</creator><creator>Xu, Yaying</creator><creator>Liu, Hongru</creator><creator>Cao, Xiangmei</creator><creator>Zhang, Bo</creator><creator>Chen, Kunsong</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20170322</creationdate><title>Genome-Wide Identification, Expression Patterns, and Functional Analysis of UDP Glycosyltransferase Family in Peach ( Prunus persica L. Batsch)</title><author>Wu, Boping ; Gao, Liuxiao ; Gao, Jie ; Xu, Yaying ; Liu, Hongru ; Cao, Xiangmei ; Zhang, Bo ; Chen, Kunsong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c459t-a06c793a5a071d2b0ad09fb9a7ee5417b64c9fc134df5fae69f858a460f82aaa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Plant Science</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wu, Boping</creatorcontrib><creatorcontrib>Gao, Liuxiao</creatorcontrib><creatorcontrib>Gao, Jie</creatorcontrib><creatorcontrib>Xu, Yaying</creatorcontrib><creatorcontrib>Liu, Hongru</creatorcontrib><creatorcontrib>Cao, Xiangmei</creatorcontrib><creatorcontrib>Zhang, Bo</creatorcontrib><creatorcontrib>Chen, Kunsong</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Frontiers in plant science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wu, Boping</au><au>Gao, Liuxiao</au><au>Gao, Jie</au><au>Xu, Yaying</au><au>Liu, Hongru</au><au>Cao, Xiangmei</au><au>Zhang, Bo</au><au>Chen, Kunsong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Identification, Expression Patterns, and Functional Analysis of UDP Glycosyltransferase Family in Peach ( Prunus persica L. Batsch)</atitle><jtitle>Frontiers in plant science</jtitle><addtitle>Front Plant Sci</addtitle><date>2017-03-22</date><risdate>2017</risdate><volume>8</volume><spage>389</spage><epage>389</epage><pages>389-389</pages><issn>1664-462X</issn><eissn>1664-462X</eissn><abstract>Peach (
L. Batsch) is a commercial grown fruit trees, important because of its essential nutrients and flavor promoting secondary metabolites. The glycosylation processes mediated by UDP-glycosyltransferases (UGTs) play an important role in regulating secondary metabolites availability. Identification and characterization of peach
is therefore a research priority. A total of 168 peach
genes that distributed unevenly across chromosomes were identified based on their conserved PSPG motifs. Phylogenetic analysis of these genes with plant UGTs clustered them into 16 groups (A-P). Comparison of the patterns of intron-extron and their positions within genes revealed one highly conserved intron insertion event in peach
. Tissue specificity, temporal expression patterns in peach fruit during development and ripening, and in response to abiotic stress UV-B irradiation was investigated using RNA-seq strategy. The relationship between
transcript levels and concentrations of glycosylated volatiles was examined to select candidates for functional analysis. Heterologous expressing these candidate genes in
identified UGTs that were involved in the
volatile glycosylation. Our results provide an important source for the identification of functional
genes to potential manipulate secondary biosynthesis in peach.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>28382047</pmid><doi>10.3389/fpls.2017.00389</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Plant Science |
title | Genome-Wide Identification, Expression Patterns, and Functional Analysis of UDP Glycosyltransferase Family in Peach ( Prunus persica L. Batsch) |
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