World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide
The World Data Centre for Microorganisms (WDCM) was established 50 years ago as the data center of the World Federation for Culture Collections (WFCC) Microbial Resource Center (MIRCEN). WDCM aims to provide integrated information services using big data technology for microbial resource centers and...
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| Veröffentlicht in: | Nucleic acids research 2017-01, Vol.45 (D1), p.D611-D618 |
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| creator | Wu, Linhuan Sun, Qinglan Desmeth, Philippe Sugawara, Hideaki Xu, Zhenghong McCluskey, Kevin Smith, David Alexander, Vasilenko Lima, Nelson Ohkuma, Moriya Robert, Vincent Zhou, Yuguang Li, Jianhui Fan, Guomei Ingsriswang, Supawadee Ozerskaya, Svetlana Ma, Juncai |
| description | The World Data Centre for Microorganisms (WDCM) was established 50 years ago as the data center of the World Federation for Culture Collections (WFCC) Microbial Resource Center (MIRCEN). WDCM aims to provide integrated information services using big data technology for microbial resource centers and microbiologists all over the world. Here, we provide an overview of WDCM including all of its integrated services. Culture Collections Information Worldwide (CCINFO) provides metadata information on 708 culture collections from 72 countries and regions. Global Catalogue of Microorganism (GCM) gathers strain catalogue information and provides a data retrieval, analysis, and visualization system of microbial resources. Currently, GCM includes more than 368,000 strains from 103 culture collections in 43 countries and regions. Analyzer of Bioresource Citation (ABC) is a data mining tool extracting strain related publications, patents, nucleotide sequences and genome information from public data sources to form a knowledge base. Reference Strain Catalogue (RSC) maintains a database of strains listed in International Standards Organization (ISO) and other international or regional standards. RSC allocates a unique identifier to strains recommended for use in diagnosis and quality control, and hence serves as a valuable cross-platform reference. WDCM provides free access to all these services at www.wdcm.org.
National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550]; Bureau of Science & Technology for Development of Chinese Academy of Sciences (Strategic bio-resources information center) and Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01]. Funding for open access charge: National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550] ; Bureau of Science & Technology for Development of Chinese Academy of Sciences [Strategic bio-resources information center]; Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01]. |
| doi_str_mv | 10.1093/nar/gkw903 |
| format | Article |
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National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550]; Bureau of Science & Technology for Development of Chinese Academy of Sciences (Strategic bio-resources information center) and Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01]. Funding for open access charge: National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550] ; Bureau of Science & Technology for Development of Chinese Academy of Sciences [Strategic bio-resources information center]; Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01].</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gkw903</identifier><identifier>PMID: 28053166</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Biodiversity ; Computational Biology - methods ; Culture Collections ; Data information ; Data Mining ; Database Issue ; Databases, Factual ; Metagenomics - methods ; Microbiology ; Microbiota ; Phylogeny ; Science & Technology ; Software ; Web Browser ; Workflow</subject><ispartof>Nucleic acids research, 2017-01, Vol.45 (D1), p.D611-D618</ispartof><rights>The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.</rights><rights>The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c403t-71c805dbebdbb9ef0ce07f0ee0aeadc5502bd2577c99581e39d6f27762c646663</citedby><cites>FETCH-LOGICAL-c403t-71c805dbebdbb9ef0ce07f0ee0aeadc5502bd2577c99581e39d6f27762c646663</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210620/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210620/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28053166$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wu, Linhuan</creatorcontrib><creatorcontrib>Sun, Qinglan</creatorcontrib><creatorcontrib>Desmeth, Philippe</creatorcontrib><creatorcontrib>Sugawara, Hideaki</creatorcontrib><creatorcontrib>Xu, Zhenghong</creatorcontrib><creatorcontrib>McCluskey, Kevin</creatorcontrib><creatorcontrib>Smith, David</creatorcontrib><creatorcontrib>Alexander, Vasilenko</creatorcontrib><creatorcontrib>Lima, Nelson</creatorcontrib><creatorcontrib>Ohkuma, Moriya</creatorcontrib><creatorcontrib>Robert, Vincent</creatorcontrib><creatorcontrib>Zhou, Yuguang</creatorcontrib><creatorcontrib>Li, Jianhui</creatorcontrib><creatorcontrib>Fan, Guomei</creatorcontrib><creatorcontrib>Ingsriswang, Supawadee</creatorcontrib><creatorcontrib>Ozerskaya, Svetlana</creatorcontrib><creatorcontrib>Ma, Juncai</creatorcontrib><title>World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide</title><title>Nucleic acids research</title><addtitle>Nucleic Acids Res</addtitle><description>The World Data Centre for Microorganisms (WDCM) was established 50 years ago as the data center of the World Federation for Culture Collections (WFCC) Microbial Resource Center (MIRCEN). WDCM aims to provide integrated information services using big data technology for microbial resource centers and microbiologists all over the world. Here, we provide an overview of WDCM including all of its integrated services. Culture Collections Information Worldwide (CCINFO) provides metadata information on 708 culture collections from 72 countries and regions. Global Catalogue of Microorganism (GCM) gathers strain catalogue information and provides a data retrieval, analysis, and visualization system of microbial resources. Currently, GCM includes more than 368,000 strains from 103 culture collections in 43 countries and regions. Analyzer of Bioresource Citation (ABC) is a data mining tool extracting strain related publications, patents, nucleotide sequences and genome information from public data sources to form a knowledge base. Reference Strain Catalogue (RSC) maintains a database of strains listed in International Standards Organization (ISO) and other international or regional standards. RSC allocates a unique identifier to strains recommended for use in diagnosis and quality control, and hence serves as a valuable cross-platform reference. WDCM provides free access to all these services at www.wdcm.org.
National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550]; Bureau of Science & Technology for Development of Chinese Academy of Sciences (Strategic bio-resources information center) and Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01]. Funding for open access charge: National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550] ; Bureau of Science & Technology for Development of Chinese Academy of Sciences [Strategic bio-resources information center]; Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01].</description><subject>Biodiversity</subject><subject>Computational Biology - methods</subject><subject>Culture Collections</subject><subject>Data information</subject><subject>Data Mining</subject><subject>Database Issue</subject><subject>Databases, Factual</subject><subject>Metagenomics - methods</subject><subject>Microbiology</subject><subject>Microbiota</subject><subject>Phylogeny</subject><subject>Science & Technology</subject><subject>Software</subject><subject>Web Browser</subject><subject>Workflow</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkcuO1DAQRS0EYpqBDR-AvERIYfyInYQF0qh5SoPYgFhaFbvSGJI42E43sOLTcdPDCFZVUp26t0qXkIecPeWskxczxIvd10PH5C2y4VKLqu60uE02TDJVcVa3Z-ReSl8Y4zVX9V1yJlqmJNd6Q359CnF09AVkoFucc0Q6hEjfeRtDiDuYfZrSMwoz9XMZTJB9-NNHSDmuNq9lIweK35cxlBZmR9fsR_8T6RIxYdyjo9NRrvcw0rIEfk70cLQ9eIf3yZ0BxoQPrus5-fjq5Yftm-rq_eu328urytZM5qrhttzseuxd33c4MIusGRgiAwRnlWKid0I1je061XKUndODaBotrK611vKcPD_pLms_obPHX2E0S_QTxB8mgDf_T2b_2ezC3ijBmRasCDy-Fojh24opm8kni-MIM4Y1Gd4q1bS6rWVBn5zQ8nVKEYcbG87MMTJTIjOnyAr86N_DbtC_GRWAnoBoARYTce9ThqOhEKaupRLyN9TWop8</recordid><startdate>20170104</startdate><enddate>20170104</enddate><creator>Wu, Linhuan</creator><creator>Sun, Qinglan</creator><creator>Desmeth, Philippe</creator><creator>Sugawara, Hideaki</creator><creator>Xu, Zhenghong</creator><creator>McCluskey, Kevin</creator><creator>Smith, David</creator><creator>Alexander, Vasilenko</creator><creator>Lima, Nelson</creator><creator>Ohkuma, Moriya</creator><creator>Robert, Vincent</creator><creator>Zhou, Yuguang</creator><creator>Li, Jianhui</creator><creator>Fan, Guomei</creator><creator>Ingsriswang, Supawadee</creator><creator>Ozerskaya, Svetlana</creator><creator>Ma, Juncai</creator><general>Oxford University Press</general><scope>RCLKO</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20170104</creationdate><title>World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide</title><author>Wu, Linhuan ; Sun, Qinglan ; Desmeth, Philippe ; Sugawara, Hideaki ; Xu, Zhenghong ; McCluskey, Kevin ; Smith, David ; Alexander, Vasilenko ; Lima, Nelson ; Ohkuma, Moriya ; Robert, Vincent ; Zhou, Yuguang ; Li, Jianhui ; Fan, Guomei ; Ingsriswang, Supawadee ; Ozerskaya, Svetlana ; Ma, Juncai</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c403t-71c805dbebdbb9ef0ce07f0ee0aeadc5502bd2577c99581e39d6f27762c646663</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Biodiversity</topic><topic>Computational Biology - methods</topic><topic>Culture Collections</topic><topic>Data information</topic><topic>Data Mining</topic><topic>Database Issue</topic><topic>Databases, Factual</topic><topic>Metagenomics - methods</topic><topic>Microbiology</topic><topic>Microbiota</topic><topic>Phylogeny</topic><topic>Science & Technology</topic><topic>Software</topic><topic>Web Browser</topic><topic>Workflow</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wu, Linhuan</creatorcontrib><creatorcontrib>Sun, Qinglan</creatorcontrib><creatorcontrib>Desmeth, Philippe</creatorcontrib><creatorcontrib>Sugawara, Hideaki</creatorcontrib><creatorcontrib>Xu, Zhenghong</creatorcontrib><creatorcontrib>McCluskey, Kevin</creatorcontrib><creatorcontrib>Smith, David</creatorcontrib><creatorcontrib>Alexander, Vasilenko</creatorcontrib><creatorcontrib>Lima, Nelson</creatorcontrib><creatorcontrib>Ohkuma, Moriya</creatorcontrib><creatorcontrib>Robert, Vincent</creatorcontrib><creatorcontrib>Zhou, Yuguang</creatorcontrib><creatorcontrib>Li, Jianhui</creatorcontrib><creatorcontrib>Fan, Guomei</creatorcontrib><creatorcontrib>Ingsriswang, Supawadee</creatorcontrib><creatorcontrib>Ozerskaya, Svetlana</creatorcontrib><creatorcontrib>Ma, Juncai</creatorcontrib><collection>RCAAP open access repository</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wu, Linhuan</au><au>Sun, Qinglan</au><au>Desmeth, Philippe</au><au>Sugawara, Hideaki</au><au>Xu, Zhenghong</au><au>McCluskey, Kevin</au><au>Smith, David</au><au>Alexander, Vasilenko</au><au>Lima, Nelson</au><au>Ohkuma, Moriya</au><au>Robert, Vincent</au><au>Zhou, Yuguang</au><au>Li, Jianhui</au><au>Fan, Guomei</au><au>Ingsriswang, Supawadee</au><au>Ozerskaya, Svetlana</au><au>Ma, Juncai</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2017-01-04</date><risdate>2017</risdate><volume>45</volume><issue>D1</issue><spage>D611</spage><epage>D618</epage><pages>D611-D618</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><abstract>The World Data Centre for Microorganisms (WDCM) was established 50 years ago as the data center of the World Federation for Culture Collections (WFCC) Microbial Resource Center (MIRCEN). WDCM aims to provide integrated information services using big data technology for microbial resource centers and microbiologists all over the world. Here, we provide an overview of WDCM including all of its integrated services. Culture Collections Information Worldwide (CCINFO) provides metadata information on 708 culture collections from 72 countries and regions. Global Catalogue of Microorganism (GCM) gathers strain catalogue information and provides a data retrieval, analysis, and visualization system of microbial resources. Currently, GCM includes more than 368,000 strains from 103 culture collections in 43 countries and regions. Analyzer of Bioresource Citation (ABC) is a data mining tool extracting strain related publications, patents, nucleotide sequences and genome information from public data sources to form a knowledge base. Reference Strain Catalogue (RSC) maintains a database of strains listed in International Standards Organization (ISO) and other international or regional standards. RSC allocates a unique identifier to strains recommended for use in diagnosis and quality control, and hence serves as a valuable cross-platform reference. WDCM provides free access to all these services at www.wdcm.org.
National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550]; Bureau of Science & Technology for Development of Chinese Academy of Sciences (Strategic bio-resources information center) and Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01]. Funding for open access charge: National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550] ; Bureau of Science & Technology for Development of Chinese Academy of Sciences [Strategic bio-resources information center]; Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01].</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>28053166</pmid><doi>10.1093/nar/gkw903</doi><oa>free_for_read</oa></addata></record> |
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| subjects | Biodiversity Computational Biology - methods Culture Collections Data information Data Mining Database Issue Databases, Factual Metagenomics - methods Microbiology Microbiota Phylogeny Science & Technology Software Web Browser Workflow |
| title | World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide |
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