Rice SNP-seek database update: new SNPs, indels, and queries

We describe updates to the Rice SNP-Seek Database since its first release. We ran a new SNP-calling pipeline followed by filtering that resulted in complete, base, filtered and core SNP datasets. Besides the Nipponbare reference genome, the pipeline was run on genome assemblies of IR 64, 93-11, DJ 1...

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Veröffentlicht in:	Nucleic acids research 2017-01, Vol.45 (D1), p.D1075-D1081
Hauptverfasser:	Mansueto, Locedie, Fuentes, Roven Rommel, Borja, Frances Nikki, Detras, Jeffery, Abriol-Santos, Juan Miguel, Chebotarov, Dmytro, Sanciangco, Millicent, Palis, Kevin, Copetti, Dario, Poliakov, Alexandre, Dubchak, Inna, Solovyev, Victor, Wing, Rod A, Hamilton, Ruaraidh Sackville, Mauleon, Ramil, McNally, Kenneth L, Alexandrov, Nickolai
Format:	Artikel
Sprache:	eng
Schlagworte:	Alleles Computational Biology - methods Database Issue Databases, Nucleic Acid Gene Frequency Genetic Loci Genome, Plant Genomics - methods Genotype INDEL Mutation Oryza - genetics Polymorphism, Single Nucleotide Search Engine Software User-Computer Interface Web Browser
Online-Zugang:	Volltext
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