The EcoCyc database: reflecting new knowledge about Escherichia coli K-12
EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model organism. New experimental discoveries about gene products, their function and regulation, new metabolic pathways, enzymes and...
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| Veröffentlicht in: | Nucleic acids research 2017-01, Vol.45 (D1), p.D543-D550 |
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| container_title | Nucleic acids research |
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| creator | Keseler, Ingrid M Mackie, Amanda Santos-Zavaleta, Alberto Billington, Richard Bonavides-Martínez, César Caspi, Ron Fulcher, Carol Gama-Castro, Socorro Kothari, Anamika Krummenacker, Markus Latendresse, Mario Muñiz-Rascado, Luis Ong, Quang Paley, Suzanne Peralta-Gil, Martin Subhraveti, Pallavi Velázquez-Ramírez, David A Weaver, Daniel Collado-Vides, Julio Paulsen, Ian Karp, Peter D |
| description | EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model organism. New experimental discoveries about gene products, their function and regulation, new metabolic pathways, enzymes and cofactors are regularly added to EcoCyc. New SmartTable tools allow users to browse collections of related EcoCyc content. SmartTables can also serve as repositories for user- or curator-generated lists. EcoCyc now supports running and modifying E. coli metabolic models directly on the EcoCyc website. |
| doi_str_mv | 10.1093/nar/gkw1003 |
| format | Article |
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EcoCyc now supports running and modifying E. coli metabolic models directly on the EcoCyc website.</description><subject>Computational Biology - methods</subject><subject>Database Issue</subject><subject>Databases, Genetic</subject><subject>Energy Metabolism</subject><subject>Escherichia coli K12 - genetics</subject><subject>Escherichia coli K12 - metabolism</subject><subject>Escherichia coli Proteins - genetics</subject><subject>Escherichia coli Proteins - metabolism</subject><subject>Gene Expression Regulation, Bacterial</subject><subject>Metabolic Networks and Pathways</subject><subject>Signal Transduction</subject><subject>Software</subject><subject>Transcription Factors - metabolism</subject><subject>Web Browser</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkM1LwzAYxoMobk5P3iVHQery2bQeBBlThwMv8xzSJP1wXTOT1rH_3o7Noaf38P54nocfANcY3WOU0nGj_LhYbjBC9AQMMY1JxNKYnIIhoohHGLFkAC5C-EQIM8zZORgQkaQpF3QIZovSwql2k62GRrUqU8E-QG_z2uq2agrY2A1cNm5TW1NYqDLXtXAadGl9pctKQe3qCr5FmFyCs1zVwV4d7gh8PE8Xk9do_v4ymzzNI00ZayOeEJRxjIRJsCBM8BglOROCGEGN0gqZXOeG0hQJLRTHlIqUxpnVimhOEk5H4HGfu-6ylTXaNq1XtVz7aqX8VjpVyf-fpipl4b4lJxhxvAu4PQR499XZ0MpVFbSta9VY1wWJE8b7YWmKe_Ruj2rvQuitHGswkjv5spcvD_J7-ubvsiP7a5v-AEYkgDw</recordid><startdate>20170104</startdate><enddate>20170104</enddate><creator>Keseler, Ingrid M</creator><creator>Mackie, Amanda</creator><creator>Santos-Zavaleta, Alberto</creator><creator>Billington, Richard</creator><creator>Bonavides-Martínez, César</creator><creator>Caspi, Ron</creator><creator>Fulcher, Carol</creator><creator>Gama-Castro, Socorro</creator><creator>Kothari, Anamika</creator><creator>Krummenacker, Markus</creator><creator>Latendresse, Mario</creator><creator>Muñiz-Rascado, Luis</creator><creator>Ong, Quang</creator><creator>Paley, Suzanne</creator><creator>Peralta-Gil, Martin</creator><creator>Subhraveti, Pallavi</creator><creator>Velázquez-Ramírez, David A</creator><creator>Weaver, Daniel</creator><creator>Collado-Vides, Julio</creator><creator>Paulsen, Ian</creator><creator>Karp, Peter D</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20170104</creationdate><title>The EcoCyc database: reflecting new knowledge about Escherichia coli K-12</title><author>Keseler, Ingrid M ; Mackie, Amanda ; Santos-Zavaleta, Alberto ; Billington, Richard ; Bonavides-Martínez, César ; Caspi, Ron ; Fulcher, Carol ; Gama-Castro, Socorro ; Kothari, Anamika ; Krummenacker, Markus ; Latendresse, Mario ; Muñiz-Rascado, Luis ; Ong, Quang ; Paley, Suzanne ; Peralta-Gil, Martin ; Subhraveti, Pallavi ; Velázquez-Ramírez, David A ; Weaver, Daniel ; Collado-Vides, Julio ; Paulsen, Ian ; Karp, Peter D</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c344t-5820b5107d8172475608f4772d73daca0dfcfd33907c7a51337936beca2c52853</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Computational Biology - methods</topic><topic>Database Issue</topic><topic>Databases, Genetic</topic><topic>Energy Metabolism</topic><topic>Escherichia coli K12 - genetics</topic><topic>Escherichia coli K12 - metabolism</topic><topic>Escherichia coli Proteins - genetics</topic><topic>Escherichia coli Proteins - metabolism</topic><topic>Gene Expression Regulation, Bacterial</topic><topic>Metabolic Networks and Pathways</topic><topic>Signal Transduction</topic><topic>Software</topic><topic>Transcription Factors - metabolism</topic><topic>Web Browser</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Keseler, Ingrid M</creatorcontrib><creatorcontrib>Mackie, Amanda</creatorcontrib><creatorcontrib>Santos-Zavaleta, Alberto</creatorcontrib><creatorcontrib>Billington, Richard</creatorcontrib><creatorcontrib>Bonavides-Martínez, César</creatorcontrib><creatorcontrib>Caspi, Ron</creatorcontrib><creatorcontrib>Fulcher, Carol</creatorcontrib><creatorcontrib>Gama-Castro, Socorro</creatorcontrib><creatorcontrib>Kothari, Anamika</creatorcontrib><creatorcontrib>Krummenacker, Markus</creatorcontrib><creatorcontrib>Latendresse, Mario</creatorcontrib><creatorcontrib>Muñiz-Rascado, Luis</creatorcontrib><creatorcontrib>Ong, Quang</creatorcontrib><creatorcontrib>Paley, Suzanne</creatorcontrib><creatorcontrib>Peralta-Gil, Martin</creatorcontrib><creatorcontrib>Subhraveti, Pallavi</creatorcontrib><creatorcontrib>Velázquez-Ramírez, David A</creatorcontrib><creatorcontrib>Weaver, Daniel</creatorcontrib><creatorcontrib>Collado-Vides, Julio</creatorcontrib><creatorcontrib>Paulsen, Ian</creatorcontrib><creatorcontrib>Karp, Peter D</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Keseler, Ingrid M</au><au>Mackie, Amanda</au><au>Santos-Zavaleta, Alberto</au><au>Billington, Richard</au><au>Bonavides-Martínez, César</au><au>Caspi, Ron</au><au>Fulcher, Carol</au><au>Gama-Castro, Socorro</au><au>Kothari, Anamika</au><au>Krummenacker, Markus</au><au>Latendresse, Mario</au><au>Muñiz-Rascado, Luis</au><au>Ong, Quang</au><au>Paley, Suzanne</au><au>Peralta-Gil, Martin</au><au>Subhraveti, Pallavi</au><au>Velázquez-Ramírez, David A</au><au>Weaver, Daniel</au><au>Collado-Vides, Julio</au><au>Paulsen, Ian</au><au>Karp, Peter D</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The EcoCyc database: reflecting new knowledge about Escherichia coli K-12</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2017-01-04</date><risdate>2017</risdate><volume>45</volume><issue>D1</issue><spage>D543</spage><epage>D550</epage><pages>D543-D550</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><abstract>EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model organism. 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| ispartof | Nucleic acids research, 2017-01, Vol.45 (D1), p.D543-D550 |
| issn | 0305-1048 1362-4962 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5210515 |
| source | MEDLINE; Open Access: Oxford University Press Open Journals; PubMed Central; Directory of Open Access Journals; Free Full-Text Journals in Chemistry |
| subjects | Computational Biology - methods Database Issue Databases, Genetic Energy Metabolism Escherichia coli K12 - genetics Escherichia coli K12 - metabolism Escherichia coli Proteins - genetics Escherichia coli Proteins - metabolism Gene Expression Regulation, Bacterial Metabolic Networks and Pathways Signal Transduction Software Transcription Factors - metabolism Web Browser |
| title | The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 |
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