PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice
Phased small-interfering RNAs (phasiRNAs) are a special class of small RNAs, which are generated in 21- or 24-nt intervals from transcripts of precursor RNAs. Although phasiRNAs have been found in a range of organisms, their biological functions in plants have yet to be uncovered. Here we show that...
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| Veröffentlicht in: | Proceedings of the National Academy of Sciences - PNAS 2016-12, Vol.113 (52), p.15144-15149 |
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| container_title | Proceedings of the National Academy of Sciences - PNAS |
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| creator | Fan, Yourong 范优荣 Yang, Jiangyi 杨江义 Mathioni, Sandra M. Yu, Jinsheng 於金生 Shen, Jianqiang 沈建强 Yang, Xuefei 杨雪菲 Wang, Lei 王磊 Zhang, Qinghua 张清华 Cai, Zhaoxia 蔡朝霞 Xu, Caiguo 徐才国 Li, Xianghua 李香花 Xiao, Jinghua 肖景华 Meyers, Blake C. Zhang, Qifa 张启发 |
| description | Phased small-interfering RNAs (phasiRNAs) are a special class of small RNAs, which are generated in 21- or 24-nt intervals from transcripts of precursor RNAs. Although phasiRNAs have been found in a range of organisms, their biological functions in plants have yet to be uncovered. Here we show that phasiRNAs generated by the photopheriod-sensetive genic male sterility 1 (Pms1) locus were associated with photoperiod-sensitive male sterility (PSMS) in rice, a germplasm that started the two-line hybrid rice breeding. The Pms1 locus encodes a long-noncoding RNA PMS1T that was preferentially expressed in young panicles. PMS1T was targeted by miR2118 to produce 21-nt phasiRNAs that preferentially accumulated in the PSMS line under long-day conditions. A single nucleotide polymorphism in PMS1T nearby the miR2118 recognition site was critical for fertility change, likely leading to differential accumulation of the phasiRNAs. This result suggested possible roles of phasiRNAs in reproductive development of rice, demonstrating the potential importance of this RNA class as regulators in biological processes. |
| doi_str_mv | 10.1073/pnas.1619159114 |
| format | Article |
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Although phasiRNAs have been found in a range of organisms, their biological functions in plants have yet to be uncovered. Here we show that phasiRNAs generated by the photopheriod-sensetive genic male sterility 1 (Pms1) locus were associated with photoperiod-sensitive male sterility (PSMS) in rice, a germplasm that started the two-line hybrid rice breeding. The Pms1 locus encodes a long-noncoding RNA PMS1T that was preferentially expressed in young panicles. PMS1T was targeted by miR2118 to produce 21-nt phasiRNAs that preferentially accumulated in the PSMS line under long-day conditions. A single nucleotide polymorphism in PMS1T nearby the miR2118 recognition site was critical for fertility change, likely leading to differential accumulation of the phasiRNAs. This result suggested possible roles of phasiRNAs in reproductive development of rice, demonstrating the potential importance of this RNA class as regulators in biological processes.</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.1619159114</identifier><identifier>PMID: 27965387</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>Biological Sciences ; Chromosome Mapping ; Cloning, Molecular ; Gene Expression Profiling ; Gene Expression Regulation, Plant ; Genes, Plant ; Genetic Loci ; Genetic Markers ; Open Reading Frames ; Oryza - genetics ; Phenotype ; Photoperiod ; Plant Infertility - genetics ; Plant Proteins - genetics ; Plant Proteins - physiology ; Plants, Genetically Modified ; Polymorphism ; Polymorphism, Single Nucleotide ; Ribonucleic acid ; Rice ; RNA ; RNA Interference ; RNA, Long Noncoding - genetics ; RNA, Plant - genetics ; RNA, Small Interfering - genetics</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2016-12, Vol.113 (52), p.15144-15149</ispartof><rights>Volumes 1–89 and 106–113, copyright as a collective work only; author(s) retains copyright to individual articles</rights><rights>Copyright National Academy of Sciences Dec 27, 2016</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c542t-b1815f371ed851288633802eee03b286f7d7c8f0f2b24eec675422c12890411c3</citedby><cites>FETCH-LOGICAL-c542t-b1815f371ed851288633802eee03b286f7d7c8f0f2b24eec675422c12890411c3</cites><orcidid>0000-0003-3436-6097</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26473042$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26473042$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,723,776,780,799,881,27901,27902,53766,53768,57992,58225</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27965387$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fan, Yourong</creatorcontrib><creatorcontrib>范优荣</creatorcontrib><creatorcontrib>Yang, Jiangyi</creatorcontrib><creatorcontrib>杨江义</creatorcontrib><creatorcontrib>Mathioni, Sandra M.</creatorcontrib><creatorcontrib>Yu, Jinsheng</creatorcontrib><creatorcontrib>於金生</creatorcontrib><creatorcontrib>Shen, Jianqiang</creatorcontrib><creatorcontrib>沈建强</creatorcontrib><creatorcontrib>Yang, Xuefei</creatorcontrib><creatorcontrib>杨雪菲</creatorcontrib><creatorcontrib>Wang, Lei</creatorcontrib><creatorcontrib>王磊</creatorcontrib><creatorcontrib>Zhang, Qinghua</creatorcontrib><creatorcontrib>张清华</creatorcontrib><creatorcontrib>Cai, Zhaoxia</creatorcontrib><creatorcontrib>蔡朝霞</creatorcontrib><creatorcontrib>Xu, Caiguo</creatorcontrib><creatorcontrib>徐才国</creatorcontrib><creatorcontrib>Li, Xianghua</creatorcontrib><creatorcontrib>李香花</creatorcontrib><creatorcontrib>Xiao, Jinghua</creatorcontrib><creatorcontrib>肖景华</creatorcontrib><creatorcontrib>Meyers, Blake C.</creatorcontrib><creatorcontrib>Zhang, Qifa</creatorcontrib><creatorcontrib>张启发</creatorcontrib><title>PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>Phased small-interfering RNAs (phasiRNAs) are a special class of small RNAs, which are generated in 21- or 24-nt intervals from transcripts of precursor RNAs. Although phasiRNAs have been found in a range of organisms, their biological functions in plants have yet to be uncovered. Here we show that phasiRNAs generated by the photopheriod-sensetive genic male sterility 1 (Pms1) locus were associated with photoperiod-sensitive male sterility (PSMS) in rice, a germplasm that started the two-line hybrid rice breeding. The Pms1 locus encodes a long-noncoding RNA PMS1T that was preferentially expressed in young panicles. PMS1T was targeted by miR2118 to produce 21-nt phasiRNAs that preferentially accumulated in the PSMS line under long-day conditions. A single nucleotide polymorphism in PMS1T nearby the miR2118 recognition site was critical for fertility change, likely leading to differential accumulation of the phasiRNAs. This result suggested possible roles of phasiRNAs in reproductive development of rice, demonstrating the potential importance of this RNA class as regulators in biological processes.</description><subject>Biological Sciences</subject><subject>Chromosome Mapping</subject><subject>Cloning, Molecular</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes, Plant</subject><subject>Genetic Loci</subject><subject>Genetic Markers</subject><subject>Open Reading Frames</subject><subject>Oryza - genetics</subject><subject>Phenotype</subject><subject>Photoperiod</subject><subject>Plant Infertility - genetics</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - physiology</subject><subject>Plants, Genetically Modified</subject><subject>Polymorphism</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Ribonucleic acid</subject><subject>Rice</subject><subject>RNA</subject><subject>RNA Interference</subject><subject>RNA, Long Noncoding - genetics</subject><subject>RNA, Plant - genetics</subject><subject>RNA, Small Interfering - genetics</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkUtv1DAUhS0EokNhzQoUqRsWTevrdzZIVVXaSuUhKGsr49xMPcrYwU4q9d_j0fQBrFjdxfnOudc-hLwFegRU8-MxtPkIFDQgGwDxjCyANlAr0dDnZEEp07URTOyRVzmvKaWNNPQl2WO6UZIbvSD9t88_4PqwGlPsZufDqhpv2oxdlTftMNQ-TJh6TFvh-5eTfFglXM1DO2EuYJziWLTY1RlD9pO_xarYsMrF5Qc_3VU-VMk7fE1e9O2Q8c393Cc_P51dn17UV1_PL09PrmonBZvqJRiQPdeAnZHAjFGcG8oQkfIlM6rXnXampz1bMoHolC425grZUAHg-D75uMsd5-UGO4dhSu1gx-Q3bbqzsfX2byX4G7uKt1YyqiSIEvDhPiDFXzPmyW58djgMbcA4ZwvlJAbA5f-gkimtGsoLevAPuo5zCuUntpRgXDKpCnW8o1yKOSfsH-8Gard1223d9qnu4nj_53Mf-Yd-C_BuB6zzFNOTroTmtOz9DZ1yr-o</recordid><startdate>20161227</startdate><enddate>20161227</enddate><creator>Fan, Yourong</creator><creator>范优荣</creator><creator>Yang, Jiangyi</creator><creator>杨江义</creator><creator>Mathioni, Sandra M.</creator><creator>Yu, Jinsheng</creator><creator>於金生</creator><creator>Shen, Jianqiang</creator><creator>沈建强</creator><creator>Yang, Xuefei</creator><creator>杨雪菲</creator><creator>Wang, Lei</creator><creator>王磊</creator><creator>Zhang, Qinghua</creator><creator>张清华</creator><creator>Cai, Zhaoxia</creator><creator>蔡朝霞</creator><creator>Xu, Caiguo</creator><creator>徐才国</creator><creator>Li, Xianghua</creator><creator>李香花</creator><creator>Xiao, Jinghua</creator><creator>肖景华</creator><creator>Meyers, Blake C.</creator><creator>Zhang, Qifa</creator><creator>张启发</creator><general>National Academy of Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-3436-6097</orcidid></search><sort><creationdate>20161227</creationdate><title>PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice</title><author>Fan, Yourong ; 范优荣 ; Yang, Jiangyi ; 杨江义 ; Mathioni, Sandra M. ; Yu, Jinsheng ; 於金生 ; Shen, Jianqiang ; 沈建强 ; Yang, Xuefei ; 杨雪菲 ; Wang, Lei ; 王磊 ; Zhang, Qinghua ; 张清华 ; Cai, Zhaoxia ; 蔡朝霞 ; Xu, Caiguo ; 徐才国 ; Li, Xianghua ; 李香花 ; Xiao, Jinghua ; 肖景华 ; Meyers, Blake C. ; Zhang, Qifa ; 张启发</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c542t-b1815f371ed851288633802eee03b286f7d7c8f0f2b24eec675422c12890411c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Biological Sciences</topic><topic>Chromosome Mapping</topic><topic>Cloning, Molecular</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes, Plant</topic><topic>Genetic Loci</topic><topic>Genetic Markers</topic><topic>Open Reading Frames</topic><topic>Oryza - genetics</topic><topic>Phenotype</topic><topic>Photoperiod</topic><topic>Plant Infertility - genetics</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - physiology</topic><topic>Plants, Genetically Modified</topic><topic>Polymorphism</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Ribonucleic acid</topic><topic>Rice</topic><topic>RNA</topic><topic>RNA Interference</topic><topic>RNA, Long Noncoding - genetics</topic><topic>RNA, Plant - genetics</topic><topic>RNA, Small Interfering - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fan, Yourong</creatorcontrib><creatorcontrib>范优荣</creatorcontrib><creatorcontrib>Yang, Jiangyi</creatorcontrib><creatorcontrib>杨江义</creatorcontrib><creatorcontrib>Mathioni, Sandra M.</creatorcontrib><creatorcontrib>Yu, Jinsheng</creatorcontrib><creatorcontrib>於金生</creatorcontrib><creatorcontrib>Shen, Jianqiang</creatorcontrib><creatorcontrib>沈建强</creatorcontrib><creatorcontrib>Yang, Xuefei</creatorcontrib><creatorcontrib>杨雪菲</creatorcontrib><creatorcontrib>Wang, Lei</creatorcontrib><creatorcontrib>王磊</creatorcontrib><creatorcontrib>Zhang, Qinghua</creatorcontrib><creatorcontrib>张清华</creatorcontrib><creatorcontrib>Cai, Zhaoxia</creatorcontrib><creatorcontrib>蔡朝霞</creatorcontrib><creatorcontrib>Xu, Caiguo</creatorcontrib><creatorcontrib>徐才国</creatorcontrib><creatorcontrib>Li, Xianghua</creatorcontrib><creatorcontrib>李香花</creatorcontrib><creatorcontrib>Xiao, Jinghua</creatorcontrib><creatorcontrib>肖景华</creatorcontrib><creatorcontrib>Meyers, Blake C.</creatorcontrib><creatorcontrib>Zhang, Qifa</creatorcontrib><creatorcontrib>张启发</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fan, Yourong</au><au>范优荣</au><au>Yang, Jiangyi</au><au>杨江义</au><au>Mathioni, Sandra M.</au><au>Yu, Jinsheng</au><au>於金生</au><au>Shen, Jianqiang</au><au>沈建强</au><au>Yang, Xuefei</au><au>杨雪菲</au><au>Wang, Lei</au><au>王磊</au><au>Zhang, Qinghua</au><au>张清华</au><au>Cai, Zhaoxia</au><au>蔡朝霞</au><au>Xu, Caiguo</au><au>徐才国</au><au>Li, Xianghua</au><au>李香花</au><au>Xiao, Jinghua</au><au>肖景华</au><au>Meyers, Blake C.</au><au>Zhang, Qifa</au><au>张启发</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2016-12-27</date><risdate>2016</risdate><volume>113</volume><issue>52</issue><spage>15144</spage><epage>15149</epage><pages>15144-15149</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><abstract>Phased small-interfering RNAs (phasiRNAs) are a special class of small RNAs, which are generated in 21- or 24-nt intervals from transcripts of precursor RNAs. Although phasiRNAs have been found in a range of organisms, their biological functions in plants have yet to be uncovered. Here we show that phasiRNAs generated by the photopheriod-sensetive genic male sterility 1 (Pms1) locus were associated with photoperiod-sensitive male sterility (PSMS) in rice, a germplasm that started the two-line hybrid rice breeding. The Pms1 locus encodes a long-noncoding RNA PMS1T that was preferentially expressed in young panicles. PMS1T was targeted by miR2118 to produce 21-nt phasiRNAs that preferentially accumulated in the PSMS line under long-day conditions. A single nucleotide polymorphism in PMS1T nearby the miR2118 recognition site was critical for fertility change, likely leading to differential accumulation of the phasiRNAs. This result suggested possible roles of phasiRNAs in reproductive development of rice, demonstrating the potential importance of this RNA class as regulators in biological processes.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>27965387</pmid><doi>10.1073/pnas.1619159114</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0003-3436-6097</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | Proceedings of the National Academy of Sciences - PNAS, 2016-12, Vol.113 (52), p.15144-15149 |
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| subjects | Biological Sciences Chromosome Mapping Cloning, Molecular Gene Expression Profiling Gene Expression Regulation, Plant Genes, Plant Genetic Loci Genetic Markers Open Reading Frames Oryza - genetics Phenotype Photoperiod Plant Infertility - genetics Plant Proteins - genetics Plant Proteins - physiology Plants, Genetically Modified Polymorphism Polymorphism, Single Nucleotide Ribonucleic acid Rice RNA RNA Interference RNA, Long Noncoding - genetics RNA, Plant - genetics RNA, Small Interfering - genetics |
| title | PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice |
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